jgi.p|Nanoce1779_2|595685, mRNA_7123 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|595685
Unique Name	mRNA_7123
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1340
Alignment location	scaffold_16:338443..339960 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	595771
Track	FilteredModels2
ProteinId	595685

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_16	supercontig	scaffold_16:338443..339960 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595685	gene_7123	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595685	mRNA_7123-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7123	CDS_7123	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_16:338443..339960+
coding sequence from alignment at scaffold_16:338443..339960+

mRNA sequence

>mRNA_7123 ID=mRNA_7123|Name=jgi.p|Nanoce1779_2|595685|organism=Nannochloropsis oceanica|type=mRNA|length=1340bp
TCTCGTCGCCGACGGACCGTTTTCCCATGCCCTAACCCCAACACATAGAA
TAGAATGCGTCATGCTAGTCTTTAACTGTCTTATCTCTTGTCGATGTGTA
CTGATCTTTCCCAGCCACTCTCTCACTTACCAACCAAGAAGAAAAGGTAG
TTAGGAGGTTGGACCAAATCTGCCCACACTATCCCATCGCGCCGTTCCCA
CAGCTGCTCTTGTGGGGCACGCCGCTCCCGTCCCTGTCCGCACCTCATAC
GGTCTTCTGCACTGCCCCTCCAACATGAGCTCCATTAGAGAACCCGCAGT
AGTAGAAGACCATTTAATAGCGGGGATGGTGGCAGGGGCCGTGTCATCTG
CCATGCTTCTCCCGCTGGATCTCATCAAGGTCCACCTCCAAGTGTACGAC
CGTGCGGGGCGGCCTTTCCCATCCATGCTCAAAGGCTTGCAGAGCATTGT
CCAGCAAGAGGGCTATCGGGGATTGTACAAAGGCTTGACTCCCGCCCTGC
TAGCAAATGGTGTGTCATGGGGCGGGTATTTTTTGTTTTACGAGCACGCT
AAGAACCGATACTTGCGCGAGCAACGGCAGCTCACGTCAGTCCACCATTT
GCTGTCCGCTTTTGAGGCAGGTATCATCATGGTTTTCATGACAAACCCGC
TGTGGCTCATCAAAACGCGCATGCAGCTGCAGCCGGGCGTCGGAGCCGGT
GTATCTAGCATGTCGGGGGGTACGGCGGCGACAGAGGCGACAGCAAAAGC
AATCAACATCAGCAAACAGGTGGCCTACACGGGACTGATACACGCCGTTC
GCACCATTGTCAAGGAAGAGGGGCCCTTGGGACTTTACAAAGGTTTGTTT
CCTGCCCTCCTTCTGACCTCCCATGGTGCCATCCAATTCGTGACTTACGA
GTGGCTTAAAAAGGCCGCCGAGCCTTACCAGATGCCCCTCCTCAGCTTCT
CTTTCCTCGGCGGTCTGGCCAAAGTTGCAGCAGGGCTAGCCACTTACCCT
TCTCAAGTTATCAAAGCCCGGCTGCAGCAACGGGAGACTGGCGCCTCCCG
CTGGCGATACACCGGCACCTGGGACTGTATCGTCAAGATCTGGCAGTTTG
AGGGGGCCTTGGGGTTCTTCAAAGGCTGTGTGCCCAACGTCCTCAAGACG
GCACCCTCGGCTGCCATCGCGTTCTTGGTCTATGAGAAGTGCATGGTTAC
CCTTAACGCCTCCCGCGGCACCCAACGAGGATGAAAGGGAAAAAAGCTTA
GAGCCAAGACGTGAGATCGACTCAAGTACAAGTACTAGGTGAACGTGTAC
GACCAGTTCAGTTAAAGTACATCGACAGACGAATTGTGGG

protein sequence of jgi.p|Nanoce1779_2|595685

>mRNA_7123-protein ID=mRNA_7123-protein|Name=jgi.p|Nanoce1779_2|595685|organism=Nannochloropsis oceanica|type=polypeptide|length=320bp
MSSIREPAVVEDHLIAGMVAGAVSSAMLLPLDLIKVHLQVYDRAGRPFPS
MLKGLQSIVQQEGYRGLYKGLTPALLANGVSWGGYFLFYEHAKNRYLREQ
RQLTSVHHLLSAFEAGIIMVFMTNPLWLIKTRMQLQPGVGAGVSSMSGGT
AATEATAKAINISKQVAYTGLIHAVRTIVKEEGPLGLYKGLFPALLLTSH
GAIQFVTYEWLKKAAEPYQMPLLSFSFLGGLAKVAAGLATYPSQVIKARL
QQRETGASRWRYTGTWDCIVKIWQFEGALGFFKGCVPNVLKTAPSAAIAF
LVYEKCMVTLNASRGTQRG*

mRNA from alignment at scaffold_16:338443..339960+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7123 ID=mRNA_7123|Name=jgi.p|Nanoce1779_2|595685|organism=Nannochloropsis oceanica|type=mRNA|length=1518bp|location=Sequence derived from alignment at scaffold_16:338443..339960+ (Nannochloropsis oceanica)
TCTCGTCGCCGACGGACCGTTTTCCCATGCCCTAACCCCAACACATAGAA
TAGAATGCGTCATGCTAGTCTTTAACTGTCTTATCTCTTGTCGATGTGTA
CTGATCTTTCCCAGCCACTCTCTCACTTACCAACCAAGAAGAAAAGGTAG
TTAGGAGGTTGGACCAAATCTGCCCACACTATCCCATCGCGCCGTTCCCA
CAGCTGCTCTTGTGGGGCACGCCGCTCCCGTCCCTGTCCGCACCTCATAC
GGTCTTCTGCACTGCCCCTCCAACATGAGCTCCATTAGAGAACCCGCAGT
AGTAGAAGACCATTTAATAGCGGGGATGGTGGCAGGGGCCGTGTCATCTG
CCATGCTTCTCCCGCTGGATCTCATCAAGGTCCACCTCCAAGTGTACGAC
CGTGCGGGGCGGCCTTTCCCATCCATGCTCAAAGGCTTGCAGAGCATTGT
CCAGCAAGAGGGCTATCGGGGATTGTACAAAGGCTTGACTCCCGCCCTGC
TAGCAAATGGTGTGTCATGGGGCGGGTATTTTTTGTTTTACGAGCACGCT
AAGAACCGATACTTGCGCGAGCAACGGCAGCTCACGTCAGTCCACCATTT
GCTGTCCGCTTTTGAGGCAGGTATCATCATGGTTTTCATGACAAACCCGC
TGTGGCTCATCAAAACGCGCATGCAGCTGCAGCCGGGCGTCGGAGCCGGT
GTATCTAGCATGTCGGGGGGTACGGCGGCGACAGAGGCGACAGCAAAAGC
AATCAACATCAGCAAACAGGTGGCCTACACGGGACTGATACACGCCGTTC
GCACCATTGTCAAGGAAGAGGGGCCCTTGGGACTTTACAAAGGTTTGAAG
GAAGTGGTCGCGAAGAAGTGTCGGAGGAGCGACTCTTTTGTCTCGTTTTC
GTAAAAATGCTTTCACAGTTTCCGGTTTTTGGGGCCTAAGGGCTCTTTTC
TTTCGCAAGCATTTTTCTTCCCCACATCTCAATATATTCCACCCTCTACT
TACCCCCTTCGACTCACTAGGTTTGTTTCCTGCCCTCCTTCTGACCTCCC
ATGGTGCCATCCAATTCGTGACTTACGAGTGGCTTAAAAAGGCCGCCGAG
CCTTACCAGATGCCCCTCCTCAGCTTCTCTTTCCTCGGCGGTCTGGCCAA
AGTTGCAGCAGGGCTAGCCACTTACCCTTCTCAAGTTATCAAAGCCCGGC
TGCAGCAACGGGAGACTGGCGCCTCCCGCTGGCGATACACCGGCACCTGG
GACTGTATCGTCAAGATCTGGCAGTTTGAGGGGGCCTTGGGGTTCTTCAA
AGGCTGTGTGCCCAACGTCCTCAAGACGGCACCCTCGGCTGCCATCGCGT
TCTTGGTCTATGAGAAGTGCATGGTTACCCTTAACGCCTCCCGCGGCACC
CAACGAGGATGAAAGGGAAAAAAGCTTAGAGCCAAGACGTGAGATCGACT
CAAGTACAAGTACTAGGTGAACGTGTACGACCAGTTCAGTTAAAGTACAT
CGACAGACGAATTGTGGG

Coding sequence (CDS) from alignment at scaffold_16:338443..339960+

>mRNA_7123 ID=mRNA_7123|Name=jgi.p|Nanoce1779_2|595685|organism=Nannochloropsis oceanica|type=CDS|length=1920bp|location=Sequence derived from alignment at scaffold_16:338443..339960+ (Nannochloropsis oceanica)
ATGAGCTCCATTAGAGAACCCGCAGTAGTAGAAGACCATTTAATAGCGGG
GATGGTGGCAGGGGCCGTGTCATCTGCCATGCTTCTCCCGCTGGATCTCA
TCAAGGTCCACCTCCAAGTGTACGACCGTGCGGGGCGGCCTTTCCCATCC
ATGCTCAAAGGCTTGCAGAGCATTGTCCAGCAAGAGGGCTATCGGGGATT
GTACAAAGGCTTGACTCCCGCCCTGCTAGCAAATGGTGTGTCATGGGGCG
GGTATTTTTTGTTTTACGAGCACGCTAAGAACCGATACTTGCGCGAGCAA
CGGCAGCTCACGTCAGTCCACCATTTGCTGTCCGCTTTTGAGGCAGGTAT
CATCATGGTTTTCATGACAAACCCGCTGTGGCTCATCAAAACGCGCATGC
AGCTGCAGCCGGGCGTCGGAGCCGGTGTATCTAGCATGTCGGGGGGTACG
GCGGCGACAGAGGCGACAGCAAAAGCAATCAACATCAGCAAACAGGTGGC
CTACACGGGACTGATACACGCCGTTCGCACCATTGTCAAGGAAGAGGGGC
CCTTGGGACTTTACAAAGGTTTGTTTCCTGCCCTCCTTCTGACCTCCCAT
GGTGCCATCCAATTCGTGACTTACGAGTGGCTTAAAAAGGCCGCCGAGCC
TTACCAGATGCCCCTCCTCAGCTTCTCTTTCCTCGGCGGTCTGGCCAAAG
TTGCAGCAGGGCTAGCCACTTACCCTTCTCAAGTTATCAAAGCCCGGCTG
CAGCAACGGGAGACTGGCGCCTCCCGCTGGCGATACACCGGCACCTGGGA
CTGTATCGTCAAGATCTGGCAGTTTGAGGGGGCCTTGGGGTTCTTCAAAG
GCTGTGTGCCCAACGTCCTCAAGACGGCACCCTCGGCTGCCATCGCGTTC
TTGGTCTATGAGAAGTGCATGGTTACCCTTAACGCCTCCCGCGGCACCCA
ACGAGGATGAATGAGCTCCATTAGAGAACCCGCAGTAGTAGAAGACCATT
TAATAGCGGGGATGGTGGCAGGGGCCGTGTCATCTGCCATGCTTCTCCCG
CTGGATCTCATCAAGGTCCACCTCCAAGTGTACGACCGTGCGGGGCGGCC
TTTCCCATCCATGCTCAAAGGCTTGCAGAGCATTGTCCAGCAAGAGGGCT
ATCGGGGATTGTACAAAGGCTTGACTCCCGCCCTGCTAGCAAATGGTGTG
TCATGGGGCGGGTATTTTTTGTTTTACGAGCACGCTAAGAACCGATACTT
GCGCGAGCAACGGCAGCTCACGTCAGTCCACCATTTGCTGTCCGCTTTTG
AGGCAGGTATCATCATGGTTTTCATGACAAACCCGCTGTGGCTCATCAAA
ACGCGCATGCAGCTGCAGCCGGGCGTCGGAGCCGGTGTATCTAGCATGTC
GGGGGGTACGGCGGCGACAGAGGCGACAGCAAAAGCAATCAACATCAGCA
AACAGGTGGCCTACACGGGACTGATACACGCCGTTCGCACCATTGTCAAG
GAAGAGGGGCCCTTGGGACTTTACAAAGGTTTGTTTCCTGCCCTCCTTCT
GACCTCCCATGGTGCCATCCAATTCGTGACTTACGAGTGGCTTAAAAAGG
CCGCCGAGCCTTACCAGATGCCCCTCCTCAGCTTCTCTTTCCTCGGCGGT
CTGGCCAAAGTTGCAGCAGGGCTAGCCACTTACCCTTCTCAAGTTATCAA
AGCCCGGCTGCAGCAACGGGAGACTGGCGCCTCCCGCTGGCGATACACCG
GCACCTGGGACTGTATCGTCAAGATCTGGCAGTTTGAGGGGGCCTTGGGG
TTCTTCAAAGGCTGTGTGCCCAACGTCCTCAAGACGGCACCCTCGGCTGC
CATCGCGTTCTTGGTCTATGAGAAGTGCATGGTTACCCTTAACGCCTCCC
GCGGCACCCAACGAGGATGA

Synonyms

Publications