jgi.p|Nanoce1779_2|103195, mRNA_7120 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|103195
Unique NamemRNA_7120
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length683
Alignment locationscaffold_16:333355..334037 +

Link to JBrowse

Properties
Property NameValue
TranscriptId103281
TrackFilteredModels2
ProteinId103195
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:333355..334037 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|103195gene_7120Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|103195mRNA_7120-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7120CDS_7120Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7120 ID=mRNA_7120|Name=jgi.p|Nanoce1779_2|103195|organism=Nannochloropsis oceanica|type=mRNA|length=683bp
CACATCAGAATTAATAGGTTTATCTTCTCTTCCCCCGACGATGAAGAAAC
CCACTAACTGCTCCTGTTGCTCACAACAATAGTATTTTTTTCCTTCCCGA
CAACATCACATCCAAATTCGTCCATTTCCTCACCTGCTGTCGCAGTGTCC
CATTTCATTTTTTGGGGGTAGGAGGAGGTTGAGGACCATGAAGTCGTGTT
TACATTGCGCCGTCAATAAATGTTTTCGCGGCCTCATTTGTAGGAGCTGG
TGCTGCTTCCATTCCAGCGGCAGCTGGGAGAAGTGTAGGAAAATGGCCCT
TCTCCCAAGAATCCCCCCTCCTGCTGGAGCTGCGGCTACCTCATCTGCTC
CTCTCGTCATCTGGCTCGCCCTGCTGTGGGATATTGGAAGTCGGGGCGTC
TGCTGGCACCATGGCTTAAGGATGGTCGTTCAGATGCTCGTGGTAATCTT
TCATGTATTGTCATGTTGCTTTTTGTGTCGTTGTGTGCGGTGTGGGGATG
GTCTGAACACGCGGGGGGAAGGGGAAGTTTGAGGGCCGTGAAATGTTTTC
GCGGCCTCAACAGCCCGTGACGGCGCAATGTAAACGTGACTCCTTGGGTT
GACTCGGAGCAAAGCAATTAGGGGGGGGACATATGAAGCATACAAGGCAC
CATATGTTTTGGTTTCCATCGAGCGTCCAGTAA
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protein sequence of jgi.p|Nanoce1779_2|103195

>mRNA_7120-protein ID=mRNA_7120-protein|Name=jgi.p|Nanoce1779_2|103195|organism=Nannochloropsis oceanica|type=polypeptide|length=115bp
MKSCLHCAVNKCFRGLICRSWCCFHSSGSWEKCRKMALLPRIPPPAGAAA
TSSAPLVIWLALLWDIGSRGVCWHHGLRMVVQMLVVIFHVLSCCFLCRCV
RCGDGLNTRGEGEV*
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mRNA from alignment at scaffold_16:333355..334037+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7120 ID=mRNA_7120|Name=jgi.p|Nanoce1779_2|103195|organism=Nannochloropsis oceanica|type=mRNA|length=683bp|location=Sequence derived from alignment at scaffold_16:333355..334037+ (Nannochloropsis oceanica)
CACATCAGAATTAATAGGTTTATCTTCTCTTCCCCCGACGATGAAGAAAC
CCACTAACTGCTCCTGTTGCTCACAACAATAGTATTTTTTTCCTTCCCGA
CAACATCACATCCAAATTCGTCCATTTCCTCACCTGCTGTCGCAGTGTCC
CATTTCATTTTTTGGGGGTAGGAGGAGGTTGAGGACCATGAAGTCGTGTT
TACATTGCGCCGTCAATAAATGTTTTCGCGGCCTCATTTGTAGGAGCTGG
TGCTGCTTCCATTCCAGCGGCAGCTGGGAGAAGTGTAGGAAAATGGCCCT
TCTCCCAAGAATCCCCCCTCCTGCTGGAGCTGCGGCTACCTCATCTGCTC
CTCTCGTCATCTGGCTCGCCCTGCTGTGGGATATTGGAAGTCGGGGCGTC
TGCTGGCACCATGGCTTAAGGATGGTCGTTCAGATGCTCGTGGTAATCTT
TCATGTATTGTCATGTTGCTTTTTGTGTCGTTGTGTGCGGTGTGGGGATG
GTCTGAACACGCGGGGGGAAGGGGAAGTTTGAGGGCCGTGAAATGTTTTC
GCGGCCTCAACAGCCCGTGACGGCGCAATGTAAACGTGACTCCTTGGGTT
GACTCGGAGCAAAGCAATTAGGGGGGGGACATATGAAGCATACAAGGCAC
CATATGTTTTGGTTTCCATCGAGCGTCCAGTAA
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Coding sequence (CDS) from alignment at scaffold_16:333355..334037+

>mRNA_7120 ID=mRNA_7120|Name=jgi.p|Nanoce1779_2|103195|organism=Nannochloropsis oceanica|type=CDS|length=345bp|location=Sequence derived from alignment at scaffold_16:333355..334037+ (Nannochloropsis oceanica)
ATGAAGTCGTGTTTACATTGCGCCGTCAATAAATGTTTTCGCGGCCTCAT
TTGTAGGAGCTGGTGCTGCTTCCATTCCAGCGGCAGCTGGGAGAAGTGTA
GGAAAATGGCCCTTCTCCCAAGAATCCCCCCTCCTGCTGGAGCTGCGGCT
ACCTCATCTGCTCCTCTCGTCATCTGGCTCGCCCTGCTGTGGGATATTGG
AAGTCGGGGCGTCTGCTGGCACCATGGCTTAAGGATGGTCGTTCAGATGC
TCGTGGTAATCTTTCATGTATTGTCATGTTGCTTTTTGTGTCGTTGTGTG
CGGTGTGGGGATGGTCTGAACACGCGGGGGGAAGGGGAAGTTTGA
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Synonyms
Publications