jgi.p|Nanoce1779_2|595664, mRNA_7118 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|595664
Unique Name	mRNA_7118
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1506
Alignment location	scaffold_16:328337..330252 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	595750
Track	FilteredModels2
ProteinId	595664

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_16	supercontig	scaffold_16:328337..330252 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595664	gene_7118	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595664	mRNA_7118-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7118	CDS_7118	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_16:328337..330252+
coding sequence from alignment at scaffold_16:328337..330252+

mRNA sequence

>mRNA_7118 ID=mRNA_7118|Name=jgi.p|Nanoce1779_2|595664|organism=Nannochloropsis oceanica|type=mRNA|length=1506bp
TAAGTCGTCCAATAGCCGCGTAGACAGTGGGGCGAGCAGTCCAGCTTATC
AGCCAACGCTTACCCTGCAATTGCCTGTGTGTTGACAAGGGGCTTTTTGT
GAGCTTATGTTTGTCGAGATTATCATATATACTAGATAACATAAAGCTCA
TCGTCGCAGATTACGATGAGGTTTTCGTGCCGTGCGTCCGCTGTGCGTTC
GCACAGCGTCAGGGGAGTCCGTCTTTGATCCACCTCCCGCGTATGTTAGA
CCCCCCAAGGTCGCACTTGGGAATACAACCCTTTCTACTTGCGTTGCTGG
TGCCATAGGTTTCAAACCTGTGCGCTGTCTCACGCCCTCGCTCGTCCGTC
CAACCAACCCCACCTCACAATGAGTACCCGCAGTAAAGAAGCAAGCCATG
GCCACCAACACCGCGACGCAACTGAAGCCGGAGGAGGATGTGGCGGGTCC
TTTCCTGTCTGACGATGCCGTGCTTATTCGCGATCTGAACTTTAGCTATG
GGGACCGCCAGGTTTTACAGGGACTTAACATGCGTCTCAAGAAGGGCAGC
CGCTGCCTTCTCATCGGTGCCAACGGCGCCGGCAAGAGCACGCTACTCCG
TATTCTGGGCGGGCGGCACTTGACCAAGCCGGACGATGCAGTGACCGTGC
TGGGAATGCACGCCTTCCGCGACACCAAGTTGAATCTAGTTCGTGCCTAC
ATGGATACGGACTGGGGCATGCGCACGGTGGCCTTTGCCGGCTACGGGGT
GCCCTTGCAGGCGGACATCCCCGTGACGGGCATGATGAGCAAATTGCAGA
GCCAGCACCCGGAGAGGCGGGATGAGCTGTTGGAGTTACTGGGCATTGAT
CCCGAATGGAGGATGAACCGCGTCTCAGACGGACAACGACGACGCGTCCA
GTTGTTCTTGGGCTTGGTCCGACCGTTCGACATTCTCCTGCTCGACGAGG
TGACTGTGTCCTTGGACGTCGTAGTGCGTCAGGACCTGCTGCGGTGGTTG
CGGAAAGAGACCGAGGAGCGGGGGGCGACCGTGTTGTACGCCACGCACAT
TTTCGACGGCCTCGACGATTGGCCCTCACACTTGCACTTCATGACCAACC
AGGGCAAAACAGGCTGGCAGGGCAAGTTAGAGGAGCTGGATCATTATCAG
GAACTGCGCAAGGCAGGGGATCCGGGCCCTCTGTTGCGCATCGCGGAGAG
ATGGTTACGAACGGAAATAGACGTGCAAAAGCGCCAGAAAAGACAAGAGA
AGGAGCTTGGGGCTCAGGCGCATGATGCCAAGCTGGCTCGGTCCACGTTA
TCGGGAGGGGGGTACGCGGCAGGTAGAATGTATGACGTATTTCATGAGAT
GAAGTAAACAATGAAAGGGTGGGGACAAAATTAAAGAGGTGACAGAGTGC
AGATAGAGCAGTTTTATGCAAGATAACGCATTCAAACACACACGGGATCA
TTATCCTTGAGAGGGAAAACTGACCGAAAGAACCAATTTCCAACTAAGCA
TACAAA

protein sequence of jgi.p|Nanoce1779_2|595664

>mRNA_7118-protein ID=mRNA_7118-protein|Name=jgi.p|Nanoce1779_2|595664|organism=Nannochloropsis oceanica|type=polypeptide|length=320bp
MATNTATQLKPEEDVAGPFLSDDAVLIRDLNFSYGDRQVLQGLNMRLKKG
SRCLLIGANGAGKSTLLRILGGRHLTKPDDAVTVLGMHAFRDTKLNLVRA
YMDTDWGMRTVAFAGYGVPLQADIPVTGMMSKLQSQHPERRDELLELLGI
DPEWRMNRVSDGQRRRVQLFLGLVRPFDILLLDEVTVSLDVVVRQDLLRW
LRKETEERGATVLYATHIFDGLDDWPSHLHFMTNQGKTGWQGKLEELDHY
QELRKAGDPGPLLRIAERWLRTEIDVQKRQKRQEKELGAQAHDAKLARST
LSGGGYAAGRMYDVFHEMK*

mRNA from alignment at scaffold_16:328337..330252+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7118 ID=mRNA_7118|Name=jgi.p|Nanoce1779_2|595664|organism=Nannochloropsis oceanica|type=mRNA|length=1916bp|location=Sequence derived from alignment at scaffold_16:328337..330252+ (Nannochloropsis oceanica)
TAAGTCGTCCAATAGCCGCGTAGACAGTGGGGCGAGCAGTCCAGCTTATC
AGCCAACGCTTACCCTGCAATTGCCTGTGTGTTGACAAGGGGCTTTTTGT
GAGCTTATGTTTGTCGAGATTATCATATATACTAGATAACATAAAGCTCA
TCGTCGCAGATTACGATGAGGTTTTCGTGCCGTGCGTCCGCTGTGCGTTC
GCACAGCGTCAGGGGAGTCCGTCTTTGATCCACCTCCCGCGTATGTTAGA
CCCCCCAAGGTCGCACTTGGGAATACAACCCTTTCTACTTGCGTTGCTGG
TGCCATAGGTTTCAAACCTGTGCGCTGTCTCACGCCCTCGCTCGTCCGTC
CAACCAACCCCACCTCACAATGAGTACCCGCAGTAAAGAAGCAAGCCATG
GCCACCAACACCGCGACGCAACTGAAGCCGGAGGAGGATGTGGCGGGTCC
TTTCCTGTCTGACGATGCCGTGCTTATTCGCGATCTGAACTTTAGCTATG
GGGACCGCCAGGTAAGCACAAAGGGGCATCAAGAAAGCTTAAGCTCGGCT
CGTGATTCGGCAAGTGCGTGGTGGTACGGAGCACGCTGCTTGCCGAGCCC
CTTCTCATCGCCTTCTCGGCACCCTCTGTCCACCAAACCATAGGTTTTAC
AGGGACTTAACATGCGTCTCAAGAAGGGCAGCCGGTATGTCGAAGGGTGA
AGTGGAGAGAGTGCGGATGGTGTTGTGTGTCTGGGCAGGTGTGTTGCTTC
TTAGTAACGCATACGTCACTCTCCTCACCACTACCCACCCAGTTACGCAG
TATATAATGGTCAGGGTTACCTCGGTGCTGACGTATGTGTAATCTCTCTG
TTGCTATATAAATGTGACGTCGTGTCTGTGTCTATCCACGGTGCGCATGT
GGCGAGTGGCCATTCTAAAAACTTGGATTCCTCCTATTCCCACCCAAACC
CTCCCCCCGCAGCTGCCTTCTCATCGGTGCCAACGGCGCCGGCAAGAGCA
CGCTACTCCGTATTCTGGGCGGGCGGCACTTGACCAAGCCGGACGATGCA
GTGACCGTGCTGGGAATGCACGCCTTCCGCGACACCAAGTTGAATCTAGT
TCGTGCCTACATGGATACGGACTGGGGCATGCGCACGGTGGCCTTTGCCG
GCTACGGGGTGCCCTTGCAGGCGGACATCCCCGTGACGGGCATGATGAGC
AAATTGCAGAGCCAGCACCCGGAGAGGCGGGATGAGCTGTTGGAGTTACT
GGGCATTGATCCCGAATGGAGGATGAACCGCGTCTCAGACGGACAACGAC
GACGCGTCCAGTTGTTCTTGGGCTTGGTCCGACCGTTCGACATTCTCCTG
CTCGACGAGGTGACTGTGTCCTTGGACGTCGTAGTGCGTCAGGACCTGCT
GCGGTGGTTGCGGAAAGAGACCGAGGAGCGGGGGGCGACCGTGTTGTACG
CCACGCACATTTTCGACGGCCTCGACGATTGGCCCTCACACTTGCACTTC
ATGACCAACCAGGGCAAAACAGGCTGGCAGGGCAAGTTAGAGGAGCTGGA
TCATTATCAGGAACTGCGCAAGGCAGGGGATCCGGGCCCTCTGTTGCGCA
TCGCGGAGAGATGGTTACGAACGGAAATAGACGTGCAAAAGCGCCAGAAA
AGACAAGAGAAGGAGCTTGGGGCTCAGGCGCATGATGCCAAGCTGGCTCG
GTCCACGTTATCGGGAGGGGGGTACGCGGCAGGTAGAATGTATGACGTAT
TTCATGAGATGAAGTAAACAATGAAAGGGTGGGGACAAAATTAAAGAGGT
GACAGAGTGCAGATAGAGCAGTTTTATGCAAGATAACGCATTCAAACACA
CACGGGATCATTATCCTTGAGAGGGAAAACTGACCGAAAGAACCAATTTC
CAACTAAGCATACAAA

Coding sequence (CDS) from alignment at scaffold_16:328337..330252+

>mRNA_7118 ID=mRNA_7118|Name=jgi.p|Nanoce1779_2|595664|organism=Nannochloropsis oceanica|type=CDS|length=2880bp|location=Sequence derived from alignment at scaffold_16:328337..330252+ (Nannochloropsis oceanica)
ATGGCCACCAACACCGCGACGCAACTGAAGCCGGAGGAGGATGTGGCGGG
TCCTTTCCTGTCTGACGATGCCGTGCTTATTCGCGATCTGAACTTTAGCT
ATGGGGACCGCCAGGTTTTACAGGGACTTAACATGCGTCTCAAGAAGGGC
AGCCGCTGCCTTCTCATCGGTGCCAACGGCGCCGGCAAGAGCACGCTACT
CCGTATTCTGGGCGGGCGGCACTTGACCAAGCCGGACGATGCAGTGACCG
TGCTGGGAATGCACGCCTTCCGCGACACCAAGTTGAATCTAGTTCGTGCC
TACATGGATACGGACTGGGGCATGCGCACGGTGGCCTTTGCCGGCTACGG
GGTGCCCTTGCAGGCGGACATCCCCGTGACGGGCATGATGAGCAAATTGC
AGAGCCAGCACCCGGAGAGGCGGGATGAGCTGTTGGAGTTACTGGGCATT
GATCCCGAATGGAGGATGAACCGCGTCTCAGACGGACAACGACGACGCGT
CCAGTTGTTCTTGGGCTTGGTCCGACCGTTCGACATTCTCCTGCTCGACG
AGGTGACTGTGTCCTTGGACGTCGTAGTGCGTCAGGACCTGCTGCGGTGG
TTGCGGAAAGAGACCGAGGAGCGGGGGGCGACCGTGTTGTACGCCACGCA
CATTTTCGACGGCCTCGACGATTGGCCCTCACACTTGCACTTCATGACCA
ACCAGGGCAAAACAGGCTGGCAGGGCAAGTTAGAGGAGCTGGATCATTAT
CAGGAACTGCGCAAGGCAGGGGATCCGGGCCCTCTGTTGCGCATCGCGGA
GAGATGGTTACGAACGGAAATAGACGTGCAAAAGCGCCAGAAAAGACAAG
AGAAGGAGCTTGGGGCTCAGGCGCATGATGCCAAGCTGGCTCGGTCCACG
TTATCGGGAGGGGGGTACGCGGCAGGTAGAATGTATGACGTATTTCATGA
GATGAAGTAAATGGCCACCAACACCGCGACGCAACTGAAGCCGGAGGAGG
ATGTGGCGGGTCCTTTCCTGTCTGACGATGCCGTGCTTATTCGCGATCTG
AACTTTAGCTATGGGGACCGCCAGGTTTTACAGGGACTTAACATGCGTCT
CAAGAAGGGCAGCCGCTGCCTTCTCATCGGTGCCAACGGCGCCGGCAAGA
GCACGCTACTCCGTATTCTGGGCGGGCGGCACTTGACCAAGCCGGACGAT
GCAGTGACCGTGCTGGGAATGCACGCCTTCCGCGACACCAAGTTGAATCT
AGTTCGTGCCTACATGGATACGGACTGGGGCATGCGCACGGTGGCCTTTG
CCGGCTACGGGGTGCCCTTGCAGGCGGACATCCCCGTGACGGGCATGATG
AGCAAATTGCAGAGCCAGCACCCGGAGAGGCGGGATGAGCTGTTGGAGTT
ACTGGGCATTGATCCCGAATGGAGGATGAACCGCGTCTCAGACGGACAAC
GACGACGCGTCCAGTTGTTCTTGGGCTTGGTCCGACCGTTCGACATTCTC
CTGCTCGACGAGGTGACTGTGTCCTTGGACGTCGTAGTGCGTCAGGACCT
GCTGCGGTGGTTGCGGAAAGAGACCGAGGAGCGGGGGGCGACCGTGTTGT
ACGCCACGCACATTTTCGACGGCCTCGACGATTGGCCCTCACACTTGCAC
TTCATGACCAACCAGGGCAAAACAGGCTGGCAGGGCAAGTTAGAGGAGCT
GGATCATTATCAGGAACTGCGCAAGGCAGGGGATCCGGGCCCTCTGTTGC
GCATCGCGGAGAGATGGTTACGAACGGAAATAGACGTGCAAAAGCGCCAG
AAAAGACAAGAGAAGGAGCTTGGGGCTCAGGCGCATGATGCCAAGCTGGC
TCGGTCCACGTTATCGGGAGGGGGGTACGCGGCAGGTAGAATGTATGACG
TATTTCATGAGATGAAGTAAATGGCCACCAACACCGCGACGCAACTGAAG
CCGGAGGAGGATGTGGCGGGTCCTTTCCTGTCTGACGATGCCGTGCTTAT
TCGCGATCTGAACTTTAGCTATGGGGACCGCCAGGTTTTACAGGGACTTA
ACATGCGTCTCAAGAAGGGCAGCCGCTGCCTTCTCATCGGTGCCAACGGC
GCCGGCAAGAGCACGCTACTCCGTATTCTGGGCGGGCGGCACTTGACCAA
GCCGGACGATGCAGTGACCGTGCTGGGAATGCACGCCTTCCGCGACACCA
AGTTGAATCTAGTTCGTGCCTACATGGATACGGACTGGGGCATGCGCACG
GTGGCCTTTGCCGGCTACGGGGTGCCCTTGCAGGCGGACATCCCCGTGAC
GGGCATGATGAGCAAATTGCAGAGCCAGCACCCGGAGAGGCGGGATGAGC
TGTTGGAGTTACTGGGCATTGATCCCGAATGGAGGATGAACCGCGTCTCA
GACGGACAACGACGACGCGTCCAGTTGTTCTTGGGCTTGGTCCGACCGTT
CGACATTCTCCTGCTCGACGAGGTGACTGTGTCCTTGGACGTCGTAGTGC
GTCAGGACCTGCTGCGGTGGTTGCGGAAAGAGACCGAGGAGCGGGGGGCG
ACCGTGTTGTACGCCACGCACATTTTCGACGGCCTCGACGATTGGCCCTC
ACACTTGCACTTCATGACCAACCAGGGCAAAACAGGCTGGCAGGGCAAGT
TAGAGGAGCTGGATCATTATCAGGAACTGCGCAAGGCAGGGGATCCGGGC
CCTCTGTTGCGCATCGCGGAGAGATGGTTACGAACGGAAATAGACGTGCA
AAAGCGCCAGAAAAGACAAGAGAAGGAGCTTGGGGCTCAGGCGCATGATG
CCAAGCTGGCTCGGTCCACGTTATCGGGAGGGGGGTACGCGGCAGGTAGA
ATGTATGACGTATTTCATGAGATGAAGTAA

Synonyms

Publications