jgi.p|Nanoce1779_2|631663, mRNA_7117 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|631663
Unique NamemRNA_7117
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length904
Alignment locationscaffold_16:327042..328414 -

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Properties
Property NameValue
TranscriptId631749
TrackFilteredModels2
ProteinId631663
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:327042..328414 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|631663gene_7117Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|631663mRNA_7117-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7117CDS_7117Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7117 ID=mRNA_7117|Name=jgi.p|Nanoce1779_2|631663|organism=Nannochloropsis oceanica|type=mRNA|length=904bp
ACAGGCAATTGCAGGGTAAGCGTTGGCTGATAAGCTGGACTGCTCGCCCC
ACTGTCTACGCGGCTATTGGACGACTTATTAACAGGCTCGATTTGACGCA
GGCAGGACAGGCATATTATTTTACCTCTGCGGCCACTCGAGAACACTGAC
CACGCGCATCTGCCTGCCTGCCCTCCTCTTTGACCTTAGGCCTGTGCCTC
ACATCAGAACAACATTCTCATAGAAAGAGATGTCGCATGATCTGCTGATC
AAGCTGATCGTCATTGGCAACACCAGCGTGGGCAAGAGCTGCCTGCTGCT
GCAATTCACAGATAAGCGCTTCCTGCCGTTGCACAATAGCACGATTGGTG
TGGAGTTCGGGAGTAAGCTGGTAACGGTCCAAGACAACGTGAAGGTAAAG
CTGCAGATCTGGGACACGGCTGGCCAAGAGACCTTCCGGAGCATCACCAG
GAGTTACTACCGGGGGGCGATTGGTGCCCTCCTCGTCTATGACATCACAA
GGCGGGATTCCTTCGTTCACGTGGAGCGCTGGCTTTCCGAGCTCCGCGAA
AACGCCAGCAGCTGTGGTGACAAGATGGTCATCATGCTCGTGGGCAACAA
ATGCGACCGGGAGAACCGCCGGGCCGTTTCAACCGAGGAAGGTGAGGCCT
TTGCGCGGGATCATGGCTTATTATTCATTGAAACCTCGGCGAAAACGAGG
ATTAATGTCGATCAGGCCTTCACGAGAGTAGCCGAGGCGGTGTGCGAGAA
GATCGAGTCGGGGGTGATTGACCCTGCAGATGAGAGTGTTGGGATCCGGT
ACATGCAAAAAAGGGGTAAGAGTGCGGGAAGGGGGGAAGGAAATGTGTCG
GTGGGTGGGCGGGGAGGTGCTGAGGCGGGTGAGGCGGGGGGCTGCGTGTG
TTGA
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protein sequence of jgi.p|Nanoce1779_2|631663

>mRNA_7117-protein ID=mRNA_7117-protein|Name=jgi.p|Nanoce1779_2|631663|organism=Nannochloropsis oceanica|type=polypeptide|length=225bp
MSHDLLIKLIVIGNTSVGKSCLLLQFTDKRFLPLHNSTIGVEFGSKLVTV
QDNVKVKLQIWDTAGQETFRSITRSYYRGAIGALLVYDITRRDSFVHVER
WLSELRENASSCGDKMVIMLVGNKCDRENRRAVSTEEGEAFARDHGLLFI
ETSAKTRINVDQAFTRVAEAVCEKIESGVIDPADESVGIRYMQKRGKSAG
RGEGNVSVGGRGGAEAGEAGGCVC*
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mRNA from alignment at scaffold_16:327042..328414-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7117 ID=mRNA_7117|Name=jgi.p|Nanoce1779_2|631663|organism=Nannochloropsis oceanica|type=mRNA|length=1373bp|location=Sequence derived from alignment at scaffold_16:327042..328414- (Nannochloropsis oceanica)
ACAGGCAATTGCAGGGTAAGCGTTGGCTGATAAGCTGGACTGCTCGCCCC
ACTGTCTACGCGGCTATTGGACGACTTATTAACAGGCTCGATTTGACGCA
GGCAGGACAGGCATATTATTTTACCTCTGCGGCCACTCGAGAACACTGAC
CACGCGCATCTGCCTGCCTGCCCTCCTCTTTGACCTTAGGCCTGTGCCTC
ACATCAGAACAACATTCTCATAGAAAGAGATGTCGCATGATCTGCTGATC
AAGGTAAGGAGCTCTTGCTCTGTTGTGGATCTTGAGTATGCTTGCTTATT
TCAAGAACATCACAGCCCGAGGAGGGTTAGCGTCCCCAGTTTCCATTTTT
CCGCGCCGTACCTTGCATGCTGATGGTAATTCCAACAGTCGGTAGAACTC
TGTTAGGGTTAGGGTCGGTAGAGGTCGACGGGAGCCTTACGTAATGCAGT
CACCTCGGACTAACCGCACCTCTCGTTTCCCTATCCCATTCCACCACACT
TTCCTTCCTGCAGCTGATCGTCATTGGCAACACCAGCGTGGGCAAGAGCT
GCCTGCTGCTGCAATTCACAGATAAGCGCTTCCTGCCGTTGCACAATAGC
ACGATTGGTGTGGAGTTCGGGAGTAAGCTGGTAACGGTCCAAGACAACGT
GAAGGTAAAGCTGCAGATCTGGGACACGGCTGGCCAAGAGACCTTCCGGA
GCATCACCAGGAGTTACTACCGGGGGGCGATTGGTGCCCTCCTCGTCTAT
GACATCACAAGGCGGGATTCGTGAGTATTGAAATATTGAAAGAGAACGGT
GGCGTGGGTTATCCCCCTCTGGTCTCCCTCTGCTCTCTCCCGCCTATCTC
TATTAACCTTCTCTTCACTTGCACTGCCGGCACATACAATATTACGTCCT
ATGATTCCCATTCCTCCTAGCGCATTGGGTTTTGATGCAGCACTCTGACA
TTCTCTTCTTCTCTCTCCTCTCCTGACAGCTTCGTTCACGTGGAGCGCTG
GCTTTCCGAGCTCCGCGAAAACGCCAGCAGCTGTGGTGACAAGATGGTCA
TCATGCTCGTGGGCAACAAATGCGACCGGGAGAACCGCCGGGCCGTTTCA
ACCGAGGAAGGTGAGGCCTTTGCGCGGGATCATGGCTTATTATTCATTGA
AACCTCGGCGAAAACGAGGATTAATGTCGATCAGGCCTTCACGAGAGTAG
CCGAGGCGGTGTGCGAGAAGATCGAGTCGGGGGTGATTGACCCTGCAGAT
GAGAGTGTTGGGATCCGGTACATGCAAAAAAGGGGTAAGAGTGCGGGAAG
GGGGGAAGGAAATGTGTCGGTGGGTGGGCGGGGAGGTGCTGAGGCGGGTG
AGGCGGGGGGCTGCGTGTGTTGA
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Coding sequence (CDS) from alignment at scaffold_16:327042..328414-

>mRNA_7117 ID=mRNA_7117|Name=jgi.p|Nanoce1779_2|631663|organism=Nannochloropsis oceanica|type=CDS|length=2025bp|location=Sequence derived from alignment at scaffold_16:327042..328414- (Nannochloropsis oceanica)
CTTCGTTCACGTGGAGCGCTGGCTTTCCGAGCTCCGCGAAAACGCCAGCA
GCTGTGGTGACAAGATGGTCATCATGCTCGTGGGCAACAAATGCGACCGG
GAGAACCGCCGGGCCGTTTCAACCGAGGAAGGTGAGGCCTTTGCGCGGGA
TCATGGCTTATTATTCATTGAAACCTCGGCGAAAACGAGGATTAATGTCG
ATCAGGCCTTCACGAGAGTAGCCGAGGCGGTGTGCGAGAAGATCGAGTCG
GGGGTGATTGACCCTGCAGATGAGAGTGTTGGGATCCGGTACATGCAAAA
AAGGGGTAAGAGTGCGGGAAGGGGGGAAGGAAATGTGTCGGTGGGTGGGC
GGGGAGGTGCTGAGGCGGGTGAGGCGGGGGGCTGCGTGTGTTGACTGATC
GTCATTGGCAACACCAGCGTGGGCAAGAGCTGCCTGCTGCTGCAATTCAC
AGATAAGCGCTTCCTGCCGTTGCACAATAGCACGATTGGTGTGGAGTTCG
GGAGTAAGCTGGTAACGGTCCAAGACAACGTGAAGGTAAAGCTGCAGATC
TGGGACACGGCTGGCCAAGAGACCTTCCGGAGCATCACCAGGAGTTACTA
CCGGGGGGCGATTGGTGCCCTCCTCGTCTATGACATCACAAGGCGGGATT
CATGTCGCATGATCTGCTGATCAAGCTTCGTTCACGTGGAGCGCTGGCTT
TCCGAGCTCCGCGAAAACGCCAGCAGCTGTGGTGACAAGATGGTCATCAT
GCTCGTGGGCAACAAATGCGACCGGGAGAACCGCCGGGCCGTTTCAACCG
AGGAAGGTGAGGCCTTTGCGCGGGATCATGGCTTATTATTCATTGAAACC
TCGGCGAAAACGAGGATTAATGTCGATCAGGCCTTCACGAGAGTAGCCGA
GGCGGTGTGCGAGAAGATCGAGTCGGGGGTGATTGACCCTGCAGATGAGA
GTGTTGGGATCCGGTACATGCAAAAAAGGGGTAAGAGTGCGGGAAGGGGG
GAAGGAAATGTGTCGGTGGGTGGGCGGGGAGGTGCTGAGGCGGGTGAGGC
GGGGGGCTGCGTGTGTTGACTGATCGTCATTGGCAACACCAGCGTGGGCA
AGAGCTGCCTGCTGCTGCAATTCACAGATAAGCGCTTCCTGCCGTTGCAC
AATAGCACGATTGGTGTGGAGTTCGGGAGTAAGCTGGTAACGGTCCAAGA
CAACGTGAAGGTAAAGCTGCAGATCTGGGACACGGCTGGCCAAGAGACCT
TCCGGAGCATCACCAGGAGTTACTACCGGGGGGCGATTGGTGCCCTCCTC
GTCTATGACATCACAAGGCGGGATTCATGTCGCATGATCTGCTGATCAAG
CTTCGTTCACGTGGAGCGCTGGCTTTCCGAGCTCCGCGAAAACGCCAGCA
GCTGTGGTGACAAGATGGTCATCATGCTCGTGGGCAACAAATGCGACCGG
GAGAACCGCCGGGCCGTTTCAACCGAGGAAGGTGAGGCCTTTGCGCGGGA
TCATGGCTTATTATTCATTGAAACCTCGGCGAAAACGAGGATTAATGTCG
ATCAGGCCTTCACGAGAGTAGCCGAGGCGGTGTGCGAGAAGATCGAGTCG
GGGGTGATTGACCCTGCAGATGAGAGTGTTGGGATCCGGTACATGCAAAA
AAGGGGTAAGAGTGCGGGAAGGGGGGAAGGAAATGTGTCGGTGGGTGGGC
GGGGAGGTGCTGAGGCGGGTGAGGCGGGGGGCTGCGTGTGTTGACTGATC
GTCATTGGCAACACCAGCGTGGGCAAGAGCTGCCTGCTGCTGCAATTCAC
AGATAAGCGCTTCCTGCCGTTGCACAATAGCACGATTGGTGTGGAGTTCG
GGAGTAAGCTGGTAACGGTCCAAGACAACGTGAAGGTAAAGCTGCAGATC
TGGGACACGGCTGGCCAAGAGACCTTCCGGAGCATCACCAGGAGTTACTA
CCGGGGGGCGATTGGTGCCCTCCTCGTCTATGACATCACAAGGCGGGATT
CATGTCGCATGATCTGCTGATCAAG
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Synonyms
Publications