jgi.p|Nanoce1779_2|595660, mRNA_7116 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595660
Unique NamemRNA_7116
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length491
Alignment locationscaffold_16:326212..326702 +

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Properties
Property NameValue
TranscriptId595746
TrackFilteredModels2
ProteinId595660
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:326212..326702 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595660gene_7116Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595660mRNA_7116-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7116CDS_7116Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7116 ID=mRNA_7116|Name=jgi.p|Nanoce1779_2|595660|organism=Nannochloropsis oceanica|type=mRNA|length=491bp
CAGATACGAATACATGACGGAGCACGTCGCCTCCGCCTCGGCCATTGCGG
CCGCCAAAGCAGGACTACAAGCCGTGGCGACCATGCGGGGACTACTGCAG
AGCACATTGCGTGTGACGCTATCAGATGGAAGGGTAGTGACGGGCAAGTA
TCAGTGTTTGGACGAACATCTAAACTTCATCTTGCAGGGGGCGACGGAGC
GGAGAGTGGTTAGGGAAAGGGCGGGTGAACAAGGGAGAGTAGACAGGCAG
GAGGTGAGAAATTTGGGGTTGGTAATGCTGCCGGGTAAGCATACGGTCAA
GGTAGAGGTAAAGGAAGTAGGGAGGGACCCGCTGGAGAATCCTCGGGCGG
TGAGGAATGAGGGTGCGGGGTTACCATAAACATGGAACAGGGAGAGCTGG
ACTCTCTTAATAAAAATAAGATTAAATAGAGTTTGGCGTTGTGTAGCCTT
CAACCTGACAAATTTGAAGAGAAAAGGGGTCAATCTTCGTG
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protein sequence of jgi.p|Nanoce1779_2|595660

>mRNA_7116-protein ID=mRNA_7116-protein|Name=jgi.p|Nanoce1779_2|595660|organism=Nannochloropsis oceanica|type=polypeptide|length=122bp
MTEHVASASAIAAAKAGLQAVATMRGLLQSTLRVTLSDGRVVTGKYQCLD
EHLNFILQGATERRVVRERAGEQGRVDRQEVRNLGLVMLPGKHTVKVEVK
EVGRDPLENPRAVRNEGAGLP*
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mRNA from alignment at scaffold_16:326212..326702+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7116 ID=mRNA_7116|Name=jgi.p|Nanoce1779_2|595660|organism=Nannochloropsis oceanica|type=mRNA|length=491bp|location=Sequence derived from alignment at scaffold_16:326212..326702+ (Nannochloropsis oceanica)
CAGATACGAATACATGACGGAGCACGTCGCCTCCGCCTCGGCCATTGCGG
CCGCCAAAGCAGGACTACAAGCCGTGGCGACCATGCGGGGACTACTGCAG
AGCACATTGCGTGTGACGCTATCAGATGGAAGGGTAGTGACGGGCAAGTA
TCAGTGTTTGGACGAACATCTAAACTTCATCTTGCAGGGGGCGACGGAGC
GGAGAGTGGTTAGGGAAAGGGCGGGTGAACAAGGGAGAGTAGACAGGCAG
GAGGTGAGAAATTTGGGGTTGGTAATGCTGCCGGGTAAGCATACGGTCAA
GGTAGAGGTAAAGGAAGTAGGGAGGGACCCGCTGGAGAATCCTCGGGCGG
TGAGGAATGAGGGTGCGGGGTTACCATAAACATGGAACAGGGAGAGCTGG
ACTCTCTTAATAAAAATAAGATTAAATAGAGTTTGGCGTTGTGTAGCCTT
CAACCTGACAAATTTGAAGAGAAAAGGGGTCAATCTTCGTG
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Coding sequence (CDS) from alignment at scaffold_16:326212..326702+

>mRNA_7116 ID=mRNA_7116|Name=jgi.p|Nanoce1779_2|595660|organism=Nannochloropsis oceanica|type=CDS|length=366bp|location=Sequence derived from alignment at scaffold_16:326212..326702+ (Nannochloropsis oceanica)
ATGACGGAGCACGTCGCCTCCGCCTCGGCCATTGCGGCCGCCAAAGCAGG
ACTACAAGCCGTGGCGACCATGCGGGGACTACTGCAGAGCACATTGCGTG
TGACGCTATCAGATGGAAGGGTAGTGACGGGCAAGTATCAGTGTTTGGAC
GAACATCTAAACTTCATCTTGCAGGGGGCGACGGAGCGGAGAGTGGTTAG
GGAAAGGGCGGGTGAACAAGGGAGAGTAGACAGGCAGGAGGTGAGAAATT
TGGGGTTGGTAATGCTGCCGGGTAAGCATACGGTCAAGGTAGAGGTAAAG
GAAGTAGGGAGGGACCCGCTGGAGAATCCTCGGGCGGTGAGGAATGAGGG
TGCGGGGTTACCATAA
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Synonyms
Publications