jgi.p|Nanoce1779_2|595659, mRNA_7115 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|595659
Unique Name	mRNA_7115
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1224
Alignment location	scaffold_16:325479..326702 +

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Properties


Property Name	Value
TranscriptId	595745
Track	FilteredModels2
ProteinId	595659

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_16	supercontig	scaffold_16:325479..326702 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595659	gene_7115	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595659	mRNA_7115-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7115	CDS_7115	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_16:325479..326702+
coding sequence from alignment at scaffold_16:325479..326702+

mRNA sequence

>mRNA_7115 ID=mRNA_7115|Name=jgi.p|Nanoce1779_2|595659|organism=Nannochloropsis oceanica|type=mRNA|length=1224bp
AACAGCCGACGACATTCATTGAGCACCATCCTAATAAATAGGAGGCATAC
GCTGCGTTACTCGCTCCTGCTGGAACAACTGAATCAACTGGCTCCGGCTA
CCTCCGACGACAACAACCACCGCGCTCGACACCACACAAAATGCCCTCCA
TCAAGATCCTGTTTTTTGCCGCTGCCCGGGAGCTGGCAGGCGGCGTGCAG
CAAGTCGTGGCCGACGTCGTGCCAGCACCAGACGGAGACGGGGTGCTGCG
CCTGAGGGACGTGCGAGCGCACCTGGCCAAGACGTTTCCAGGCCTCAGCC
CCATCATTGCAGACGTGACGCTGGCCTTGAATATGGAGTATGTTGCCGTC
GAAACGGAAGCGACCCTGACGGTGCAGGCGGGGGATGAAGTGGCGCTTAT
ACCACCCATCAGTGGCGGATAAGTGCTGGTGCATGGTTCTACTCACAATT
GGGTCAAAATGAGGCTGCATTTGAACGGCGGGGTCAAGTTGTGAGGGCTC
GAGACAGCGTTGTATTGAATTTGAGCATTGTTATTGAACGCACTATTGTG
GTCTTTTTTTGCTGCGAACGTACAAGCGAAAGGGGGGAGTCGAAATGTTA
AGGGCATAGGATAGAAGCCTTGGAGTTGGACTTCTCCAGGGGAAAATGAG
CTGCCTATTTGGATTAGCCACCAAGGCACAAAAAATGTGGAGTGTTAAAA
GCCCTAACCATCTTATTTTCTTCCCTTATCCCCCAGATACGAATACATGA
CGGAGCACGTCGCCTCCGCCTCGGCCATTGCGGCCGCCAAAGCAGGACTA
CAAGCCGTGGCGACCATGCGGGGACTACTGCAGAGCACATTGCGTGTGAC
GCTATCAGATGGAAGGGTAGTGACGGGCAAGTATCAGTGTTTGGACGAAC
ATCTAAACTTCATCTTGCAGGGGGCGACGGAGCGGAGAGTGGTTAGGGAA
AGGGCGGGTGAACAAGGGAGAGTAGACAGGCAGGAGGTGAGAAATTTGGG
GTTGGTAATGCTGCCGGGTAAGCATACGGTCAAGGTAGAGGTAAAGGAAG
TAGGGAGGGACCCGCTGGAGAATCCTCGGGCGGTGAGGAATGAGGGTGCG
GGGTTACCATAAACATGGAACAGGGAGAGCTGGACTCTCTTAATAAAAAT
AAGATTAAATAGAGTTTGGCGTTGTGTAGCCTTCAACCTGACAAATTTGA
AGAGAAAAGGGGTCAATCTTCGTG

protein sequence of jgi.p|Nanoce1779_2|595659

>mRNA_7115-protein ID=mRNA_7115-protein|Name=jgi.p|Nanoce1779_2|595659|organism=Nannochloropsis oceanica|type=polypeptide|length=94bp
MPSIKILFFAAARELAGGVQQVVADVVPAPDGDGVLRLRDVRAHLAKTFP
GLSPIIADVTLALNMEYVAVETEATLTVQAGDEVALIPPISGG*

mRNA from alignment at scaffold_16:325479..326702+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7115 ID=mRNA_7115|Name=jgi.p|Nanoce1779_2|595659|organism=Nannochloropsis oceanica|type=mRNA|length=1224bp|location=Sequence derived from alignment at scaffold_16:325479..326702+ (Nannochloropsis oceanica)
AACAGCCGACGACATTCATTGAGCACCATCCTAATAAATAGGAGGCATAC
GCTGCGTTACTCGCTCCTGCTGGAACAACTGAATCAACTGGCTCCGGCTA
CCTCCGACGACAACAACCACCGCGCTCGACACCACACAAAATGCCCTCCA
TCAAGATCCTGTTTTTTGCCGCTGCCCGGGAGCTGGCAGGCGGCGTGCAG
CAAGTCGTGGCCGACGTCGTGCCAGCACCAGACGGAGACGGGGTGCTGCG
CCTGAGGGACGTGCGAGCGCACCTGGCCAAGACGTTTCCAGGCCTCAGCC
CCATCATTGCAGACGTGACGCTGGCCTTGAATATGGAGTATGTTGCCGTC
GAAACGGAAGCGACCCTGACGGTGCAGGCGGGGGATGAAGTGGCGCTTAT
ACCACCCATCAGTGGCGGATAAGTGCTGGTGCATGGTTCTACTCACAATT
GGGTCAAAATGAGGCTGCATTTGAACGGCGGGGTCAAGTTGTGAGGGCTC
GAGACAGCGTTGTATTGAATTTGAGCATTGTTATTGAACGCACTATTGTG
GTCTTTTTTTGCTGCGAACGTACAAGCGAAAGGGGGGAGTCGAAATGTTA
AGGGCATAGGATAGAAGCCTTGGAGTTGGACTTCTCCAGGGGAAAATGAG
CTGCCTATTTGGATTAGCCACCAAGGCACAAAAAATGTGGAGTGTTAAAA
GCCCTAACCATCTTATTTTCTTCCCTTATCCCCCAGATACGAATACATGA
CGGAGCACGTCGCCTCCGCCTCGGCCATTGCGGCCGCCAAAGCAGGACTA
CAAGCCGTGGCGACCATGCGGGGACTACTGCAGAGCACATTGCGTGTGAC
GCTATCAGATGGAAGGGTAGTGACGGGCAAGTATCAGTGTTTGGACGAAC
ATCTAAACTTCATCTTGCAGGGGGCGACGGAGCGGAGAGTGGTTAGGGAA
AGGGCGGGTGAACAAGGGAGAGTAGACAGGCAGGAGGTGAGAAATTTGGG
GTTGGTAATGCTGCCGGGTAAGCATACGGTCAAGGTAGAGGTAAAGGAAG
TAGGGAGGGACCCGCTGGAGAATCCTCGGGCGGTGAGGAATGAGGGTGCG
GGGTTACCATAAACATGGAACAGGGAGAGCTGGACTCTCTTAATAAAAAT
AAGATTAAATAGAGTTTGGCGTTGTGTAGCCTTCAACCTGACAAATTTGA
AGAGAAAAGGGGTCAATCTTCGTG

Coding sequence (CDS) from alignment at scaffold_16:325479..326702+

>mRNA_7115 ID=mRNA_7115|Name=jgi.p|Nanoce1779_2|595659|organism=Nannochloropsis oceanica|type=CDS|length=282bp|location=Sequence derived from alignment at scaffold_16:325479..326702+ (Nannochloropsis oceanica)
ATGCCCTCCATCAAGATCCTGTTTTTTGCCGCTGCCCGGGAGCTGGCAGG
CGGCGTGCAGCAAGTCGTGGCCGACGTCGTGCCAGCACCAGACGGAGACG
GGGTGCTGCGCCTGAGGGACGTGCGAGCGCACCTGGCCAAGACGTTTCCA
GGCCTCAGCCCCATCATTGCAGACGTGACGCTGGCCTTGAATATGGAGTA
TGTTGCCGTCGAAACGGAAGCGACCCTGACGGTGCAGGCGGGGGATGAAG
TGGCGCTTATACCACCCATCAGTGGCGGATAA

Synonyms

Publications