jgi.p|Nanoce1779_2|557536, mRNA_7113 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|557536
Unique Name	mRNA_7113
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2432
Alignment location	scaffold_16:321635..324204 -

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Properties


Property Name	Value
TranscriptId	557622
Track	FilteredModels2
ProteinId	557536

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_16	supercontig	scaffold_16:321635..324204 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|557536	gene_7113	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|557536	mRNA_7113-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7113	CDS_7113	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_16:321635..324204-
coding sequence from alignment at scaffold_16:321635..324204-

mRNA sequence

>mRNA_7113 ID=mRNA_7113|Name=jgi.p|Nanoce1779_2|557536|organism=Nannochloropsis oceanica|type=mRNA|length=2432bp
ATGAATGGGATCGAGCTCTCCATCCATACCTGCACTAAGTCCATGGCGAG
AGAGGTCAGGTATATATTCCCTCACCTTTCAAGAGGACAGCTGCTCATCC
TCCCCACCATTCAAAGGTCCCGGGTGGACACGGTGCGCTTCGGCGTGGAT
GTGGAAGAAGAGAAAGACCGATGTCTCGAGTACTTCGCAGATTTCGCCCG
CCCGCTTTGCGAAAGCTTGCGCAGCCAGGGCCACTGGGCGGATTTCATTG
ACCCTTGCTCGGGTCTGCCTATGATGACACCCCACTGCACTCGACCCTAC
AATGAGGTCGCAGGCTTTGAACACTTACTTAGATACACAACACAGAACGC
CGGGTGCTGCAAAATTTTGCTTCATCCCCGATGGGGCTCGAGTTGTTATC
CGGCTACAATTTTTACGACCGCCCCTCTTGAGAATGTCCAGGCGGCTATC
AAAGTGGCGGAGAAGGGGGAGGCATGGAGGGAGGGAGGGATTGGAATGCG
GCGTGTGATGGAGCCTGCGGGGGTTTTGGTGGATTGACGCAGCCTAGAAG
ATAGAGGGGGGAAGAGAGGGCTGTTGGTGGAGATTGATCAATTATGGTAG
TGAGAGAGAGAAACAGGAAAATGGATAGCGGGGAGTTAACGACGGAGCGG
TCTTTAAGTAAAACTGTTTTTTGAGGGGTGGGAGTAGGAGAAGGTAGGAG
GAATGTAGAGAGGAAAGAGAAAGTGAACTTTTCGACGAAGCCGGACCGAG
GATACTGCCAATGTCTCATAGGGGGGAAAACAGCGTGTGGGTGGGCAATG
GTTGGGGCCGGTAGTGGGAGAAAGCATCTGCATTCAGGGAGAAATGAGGG
CACGTATTTCAACGGCCCGACATTACCGAGGAACAAAGAACCCAGCAAAC
AATAATGAAAAAGGTACATGCTTGCTTGTATAGGAGGTCTTCACTGACTC
AAACGAAATGTACTGCGCACGGAAATTAGGGGAGATTAAAGGGCACCCGC
ACGTAGCCACACTTTTCTTCATTGAAACTTTCGATCAGCGGGATTCATAT
CAAGACTTCTCTCTCCATTTCGTCTAACCTTCTAACCCAAATATGGGGAG
AACTGCCCGCATGGCATGCTTAGATAGCTTGCTTCTTATTGGAGGGGGAC
CGTGAATAAACAAGCCTTGCCGTCCTCCTGTCCCCTGTCCTCCTGTCTCC
TGTCGACGTTCTCCCTTCCTTACTTCCTTCTCCTCACCTTGCTTCCAGTC
TTCGTCACACCCAATCCAGCAGAAGGCAGCCGTAAGCACCTCTAAAAGAC
TCGGAACTGCTTCTTGATGGAAAGCGCCTGGTTGATGGCGGGCTCGTGCA
TCAACACATTAAAACGCACCGTCTTGCTCAAAGGGCGACACTGCCCCACC
GTCACGATGTCTCCCTCCTTGATCTGTGGGAAGGCGGGCGACCAGTGTGC
GGCAAGATTTTTGTGTCGTTTCTCGAACCGGCAGTACTTGGAAACCCAGT
GCAGGTAGTCCCGACGAATGATAAGGGTGCGAGTCATCTTGGTGGACAGC
ACGATGCCCTTGAGGATTCGCCCACGGATAGAGACCGTGCCGGTGAACGG
GCACTTCTTATCCACATAAGTACCGGTCTTGGCCTCCTTTGGGGTCTTGA
AGCCTAGGCCGACCTCCTTCGTCCAGCGGGCACCCTGTTGTAAGAGGAGG
GAGAATAGGGAGAAAGGAGTCGAAGTCATTGTAAAAAGCAATCCACCTCA
TGATCGGTACTTTCGACCGCACTTATTTTGCGATATTGAGAAACTATACC
ACACTGATATCTCATCGCTGCATGCCTCTGTCCCTGTTCCCTACCACCGT
CTCTTCCTTCCTCAGCTCTCCTCCTCATACTTACATGCTTCGAACGGCTG
GAGCCCTCCTTGCGGGAGCCGGTCTTGCCGAACATGAAGACACCCTTTTG
CACTTGGTAAGCCTTCTCATGCTGATCAGCCTCCTTGTAGGCGCCACGCT
TGACGCCCTTCTCAGCAACCATAATGGATGCCTGGGTGAGATGGAGGACG
GATGGGATAGATGGAGTAGGATGTGAGAGGATAGGCAGAAAGGCACAATT
TGACCAGAGGTCCTTGAGCTGTAATGGCTGGTCCCACTATAAAGGCGTCT
GTTGTCGCTCTGTCTGGGTGGTGGGAGCGTGTGGGCGTGGTCGTGGTGGC
ACAAAGGAGCGTGGTTCATGATGCAAGCACGACCTCCTTCTCTTGACGAG
CACCACCACAATCAAGCCTTCATCCACCCACCACCCGCAGTCCTTGTTAG
AGGAGGCAAAAATGTTCTAGTATTACACATGAGGTGGAAGAGGGGAGTGA
GGGTGGGTCCTCGAGGCCAAAGAATTGTGCAACAGGTAGCGAAAGAAGAA
GAGGACGCCTGGTGCTGCTTGTGTGGTGTTGG

protein sequence of jgi.p|Nanoce1779_2|557536

>mRNA_7113-protein ID=mRNA_7113-protein|Name=jgi.p|Nanoce1779_2|557536|organism=Nannochloropsis oceanica|type=polypeptide|length=179bp
MNGIELSIHTCTKSMAREVRYIFPHLSRGQLLILPTIQRSRVDTVRFGVD
VEEEKDRCLEYFADFARPLCESLRSQGHWADFIDPCSGLPMMTPHCTRPY
NEVAGFEHLLRYTTQNAGCCKILLHPRWGSSCYPATIFTTAPLENVQAAI
KVAEKGEAWREGGIGMRRVMEPAGVLVD*

mRNA from alignment at scaffold_16:321635..324204-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7113 ID=mRNA_7113|Name=jgi.p|Nanoce1779_2|557536|organism=Nannochloropsis oceanica|type=mRNA|length=2570bp|location=Sequence derived from alignment at scaffold_16:321635..324204- (Nannochloropsis oceanica)
ATGAATGGGATCGAGCTCTCCATCCATACCTGCACTAAGTCCATGGCGAG
AGAGGTCAGGTATATATTCCCTCACCTTTCGTTGAACAGCAACACCGGTG
CGAACCGCAGTGGAGACAAGGCTCGAGTGCCGGCGGAGCTCCATGCTACG
ATTACAATGCCCAGCACTGAGATCGGCGTCGCTGGCGGTCTGGAGAAGAG
GCGACAGGACGAAGAAAGAAGAGGACAGCTGCTCATCCTCCCCACCATTC
AAAGGTCCCGGGTGGACACGGTGCGCTTCGGCGTGGATGTGGAAGAAGAG
AAAGACCGATGTCTCGAGTACTTCGCAGATTTCGCCCGCCCGCTTTGCGA
AAGCTTGCGCAGCCAGGGCCACTGGGCGGATTTCATTGACCCTTGCTCGG
GTCTGCCTATGATGACACCCCACTGCACTCGACCCTACAATGAGGTCGCA
GGCTTTGAACACTTACTTAGATACACAACACAGAACGCCGGGTGCTGCAA
AATTTTGCTTCATCCCCGATGGGGCTCGAGTTGTTATCCGGCTACAATTT
TTACGACCGCCCCTCTTGAGAATGTCCAGGCGGCTATCAAAGTGGCGGAG
AAGGGGGAGGCATGGAGGGAGGGAGGGATTGGAATGCGGCGTGTGATGGA
GCCTGCGGGGGTTTTGGTGGATTGACGCAGCCTAGAAGATAGAGGGGGGA
AGAGAGGGCTGTTGGTGGAGATTGATCAATTATGGTAGTGAGAGAGAGAA
ACAGGAAAATGGATAGCGGGGAGTTAACGACGGAGCGGTCTTTAAGTAAA
ACTGTTTTTTGAGGGGTGGGAGTAGGAGAAGGTAGGAGGAATGTAGAGAG
GAAAGAGAAAGTGAACTTTTCGACGAAGCCGGACCGAGGATACTGCCAAT
GTCTCATAGGGGGGAAAACAGCGTGTGGGTGGGCAATGGTTGGGGCCGGT
AGTGGGAGAAAGCATCTGCATTCAGGGAGAAATGAGGGCACGTATTTCAA
CGGCCCGACATTACCGAGGAACAAAGAACCCAGCAAACAATAATGAAAAA
GGTACATGCTTGCTTGTATAGGAGGTCTTCACTGACTCAAACGAAATGTA
CTGCGCACGGAAATTAGGGGAGATTAAAGGGCACCCGCACGTAGCCACAC
TTTTCTTCATTGAAACTTTCGATCAGCGGGATTCATATCAAGACTTCTCT
CTCCATTTCGTCTAACCTTCTAACCCAAATATGGGGAGAACTGCCCGCAT
GGCATGCTTAGATAGCTTGCTTCTTATTGGAGGGGGACCGTGAATAAACA
AGCCTTGCCGTCCTCCTGTCCCCTGTCCTCCTGTCTCCTGTCGACGTTCT
CCCTTCCTTACTTCCTTCTCCTCACCTTGCTTCCAGTCTTCGTCACACCC
AATCCAGCAGAAGGCAGCCGTAAGCACCTCTAAAAGACTCGGAACTGCTT
CTTGATGGAAAGCGCCTGGTTGATGGCGGGCTCGTGCATCAACACATTAA
AACGCACCGTCTTGCTCAAAGGGCGACACTGCCCCACCGTCACGATGTCT
CCCTCCTTGATCTGTGGGAAGGCGGGCGACCAGTGTGCGGCAAGATTTTT
GTGTCGTTTCTCGAACCGGCAGTACTTGGAAACCCAGTGCAGGTAGTCCC
GACGAATGATAAGGGTGCGAGTCATCTTGGTGGACAGCACGATGCCCTTG
AGGATTCGCCCACGGATAGAGACCGTGCCGGTGAACGGGCACTTCTTATC
CACATAAGTACCGGTCTTGGCCTCCTTTGGGGTCTTGAAGCCTAGGCCGA
CCTCCTTCGTCCAGCGGGCACCCTGTTGTAAGAGGAGGGAGAATAGGGAG
AAAGGAGTCGAAGTCATTGTAAAAAGCAATCCACCTCATGATCGGTACTT
TCGACCGCACTTATTTTGCGATATTGAGAAACTATACCACACTGATATCT
CATCGCTGCATGCCTCTGTCCCTGTTCCCTACCACCGTCTCTTCCTTCCT
CAGCTCTCCTCCTCATACTTACATGCTTCGAACGGCTGGAGCCCTCCTTG
CGGGAGCCGGTCTTGCCGAACATGAAGACACCCTTTTGCACTTGGTAAGC
CTTCTCATGCTGATCAGCCTCCTTGTAGGCGCCACGCTTGACGCCCTTCT
CAGCAACCATAATGGATGCCTGGGTGAGATGGAGGACGGATGGGATAGAT
GGAGTAGGATGTGAGAGGATAGGCAGAAAGGCACAATTTGACCAGAGGTC
CTTGAGCTGTAATGGCTGGTCCCACTATAAAGGCGTCTGTTGTCGCTCTG
TCTGGGTGGTGGGAGCGTGTGGGCGTGGTCGTGGTGGCACAAAGGAGCGT
GGTTCATGATGCAAGCACGACCTCCTTCTCTTGACGAGCACCACCACAAT
CAAGCCTTCATCCACCCACCACCCGCAGTCCTTGTTAGAGGAGGCAAAAA
TGTTCTAGTATTACACATGAGGTGGAAGAGGGGAGTGAGGGTGGGTCCTC
GAGGCCAAAGAATTGTGCAACAGGTAGCGAAAGAAGAAGAGGACGCCTGG
TGCTGCTTGTGTGGTGTTGG

Coding sequence (CDS) from alignment at scaffold_16:321635..324204-

>mRNA_7113 ID=mRNA_7113|Name=jgi.p|Nanoce1779_2|557536|organism=Nannochloropsis oceanica|type=CDS|length=1074bp|location=Sequence derived from alignment at scaffold_16:321635..324204- (Nannochloropsis oceanica)
AAGAGGACAGCTGCTCATCCTCCCCACCATTCAAAGGTCCCGGGTGGACA
CGGTGCGCTTCGGCGTGGATGTGGAAGAAGAGAAAGACCGATGTCTCGAG
TACTTCGCAGATTTCGCCCGCCCGCTTTGCGAAAGCTTGCGCAGCCAGGG
CCACTGGGCGGATTTCATTGACCCTTGCTCGGGTCTGCCTATGATGACAC
CCCACTGCACTCGACCCTACAATGAGGTCGCAGGCTTTGAACACTTACTT
AGATACACAACACAGAACGCCGGGTGCTGCAAAATTTTGCTTCATCCCCG
ATGGGGCTCGAGTTGTTATCCGGCTACAATTTTTACGACCGCCCCTCTTG
AGAATGTCCAGGCGGCTATCAAAGTGGCGGAGAAGGGGGAGGCATGGAGG
GAGGGAGGGATTGGAATGCGGCGTGTGATGGAGCCTGCGGGGGTTTTGGT
GGATTGAATGAATGGGATCGAGCTCTCCATCCATACCTGCACTAAGTCCA
TGGCGAGAGAGGTCAGGTATATATTCCCTCACCTTTCAAGAGGACAGCTG
CTCATCCTCCCCACCATTCAAAGGTCCCGGGTGGACACGGTGCGCTTCGG
CGTGGATGTGGAAGAAGAGAAAGACCGATGTCTCGAGTACTTCGCAGATT
TCGCCCGCCCGCTTTGCGAAAGCTTGCGCAGCCAGGGCCACTGGGCGGAT
TTCATTGACCCTTGCTCGGGTCTGCCTATGATGACACCCCACTGCACTCG
ACCCTACAATGAGGTCGCAGGCTTTGAACACTTACTTAGATACACAACAC
AGAACGCCGGGTGCTGCAAAATTTTGCTTCATCCCCGATGGGGCTCGAGT
TGTTATCCGGCTACAATTTTTACGACCGCCCCTCTTGAGAATGTCCAGGC
GGCTATCAAAGTGGCGGAGAAGGGGGAGGCATGGAGGGAGGGAGGGATTG
GAATGCGGCGTGTGATGGAGCCTGCGGGGGTTTTGGTGGATTGAATGAAT
GGGATCGAGCTCTCCATCCATACCTGCACTAAGTCCATGGCGAGAGAGGT
CAGGTATATATTCCCTCACCTTTC

Synonyms

Publications