jgi.p|Nanoce1779_2|595655, mRNA_7112 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595655
Unique NamemRNA_7112
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1357
Alignment locationscaffold_16:322033..323589 +

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Properties
Property NameValue
TranscriptId595741
TrackFilteredModels2
ProteinId595655
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:322033..323589 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595655gene_7112Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595655mRNA_7112-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7112CDS_7112Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7112 ID=mRNA_7112|Name=jgi.p|Nanoce1779_2|595655|organism=Nannochloropsis oceanica|type=mRNA|length=1357bp
CAGGCATCCATTATGGTTGCTGAGAAGGGCGTCAAGCGTGGCGCCTACAA
GGAGGCTGATCAGCATGAGAAGGCTTACCAAGTGCAAAAGGGTGTCTTCA
TGTTCGGCAAGACCGGCTCCCGCAAGGAGGGCTCCAGCCGTTCGAAGCAT
GGTGCCCGCTGGACGAAGGAGGTCGGCCTAGGCTTCAAGACCCCAAAGGA
GGCCAAGACCGGTACTTATGTGGATAAGAAGTGCCCGTTCACCGGCACGG
TCTCTATCCGTGGGCGAATCCTCAAGGGCATCGTGCTGTCCACCAAGATG
ACTCGCACCCTTATCATTCGTCGGGACTACCTGCACTGGGTTTCCAAGTA
CTGCCGGTTCGAGAAACGACACAAAAATCTTGCCGCACACTGGTCGCCCG
CCTTCCCACAGATCAAGGAGGGAGACATCGTGACGGTGGGGCAGTGTCGC
CCTTTGAGCAAGACGGTGCGTTTTAATGTGTTGATGCACGAGCCCGCCAT
CAACCAGGCGCTTTCCATCAAGAAGCAGTTCCGAGTCTTTTAGAGGTGCT
TACGGCTGCCTTCTGCTGGATTGGGTGTGACGAAGACTGGAAGCAAGGTG
AGGAGAAGGAAGTAAGGAAGGGAGAACGTCGACAGGAGACAGGAGGACAG
GGGACAGGAGGACGGCAAGGCTTGTTTATTCACGGTCCCCCTCCAATAAG
AAGCAAGCTATCTAAGCATGCCATGCGGGCAGTTCTCCCCATATTTGGGT
TAGAAGGTTAGACGAAATGGAGAGAGAAGTCTTGATATGAATCCCGCTGA
TCGAAAGTTTCAATGAAGAAAAGTGTGGCTACGTGCGGGTGCCCTTTAAT
CTCCCCTAATTTCCGTGCGCAGTACATTTCGTTTGAGTCAGTGAAGACCT
CCTATACAAGCAAGCATGTACCTTTTTCATTATTGTTTGCTGGGTTCTTT
GTTCCTCGGTAATGTCGGGCCGTTGAAATACGTGCCCTCATTTCTCCCTG
AATGCAGATGCTTTCTCCCACTACCGGCCCCAACCATTGCCCACCCACAC
GCTGTTTTCCCCCCTATGAGACATTGGCAGTATCCTCGGTCCGGCTTCGT
CGAAAAGTTCACTTTCTCTTTCCTCTCTACATTCCTCCTACCTTCTCCTA
CTCCCACCCCTCAAAAAACAGTTTTACTTAAAGACCGCTCCGTCGTTAAC
TCCCCGCTATCCATTTTCCTGTTTCTCTCTCTCACTACCATAATTGATCA
ATCTCCACCAACAGCCCTCTCTTCCCCCCTCTATCTTCTAGGCTGCGTCA
ATCCACCAAAACCCCCGCAGGCTCCATCACACGCCGCATTCCAATCCCTC
CCTCCCT
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protein sequence of jgi.p|Nanoce1779_2|595655

>mRNA_7112-protein ID=mRNA_7112-protein|Name=jgi.p|Nanoce1779_2|595655|organism=Nannochloropsis oceanica|type=polypeptide|length=177bp
MVAEKGVKRGAYKEADQHEKAYQVQKGVFMFGKTGSRKEGSSRSKHGARW
TKEVGLGFKTPKEAKTGTYVDKKCPFTGTVSIRGRILKGIVLSTKMTRTL
IIRRDYLHWVSKYCRFEKRHKNLAAHWSPAFPQIKEGDIVTVGQCRPLSK
TVRFNVLMHEPAINQALSIKKQFRVF*
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mRNA from alignment at scaffold_16:322033..323589+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7112 ID=mRNA_7112|Name=jgi.p|Nanoce1779_2|595655|organism=Nannochloropsis oceanica|type=mRNA|length=1557bp|location=Sequence derived from alignment at scaffold_16:322033..323589+ (Nannochloropsis oceanica)
CAGGCATCCATTATGGTTGCTGAGAAGGGCGTCAAGCGTGGCGCCTACAA
GGAGGCTGATCAGCATGAGAAGGCTTACCAAGTGCAAAAGGGTGTCTTCA
TGTTCGGCAAGACCGGCTCCCGCAAGGAGGGCTCCAGCCGTTCGAAGCAT
GTAAGTATGAGGAGGAGAGCTGAGGAAGGAAGAGACGGTGGTAGGGAACA
GGGACAGAGGCATGCAGCGATGAGATATCAGTGTGGTATAGTTTCTCAAT
ATCGCAAAATAAGTGCGGTCGAAAGTACCGATCATGAGGTGGATTGCTTT
TTACAATGACTTCGACTCCTTTCTCCCTATTCTCCCTCCTCTTACAACAG
GGTGCCCGCTGGACGAAGGAGGTCGGCCTAGGCTTCAAGACCCCAAAGGA
GGCCAAGACCGGTACTTATGTGGATAAGAAGTGCCCGTTCACCGGCACGG
TCTCTATCCGTGGGCGAATCCTCAAGGGCATCGTGCTGTCCACCAAGATG
ACTCGCACCCTTATCATTCGTCGGGACTACCTGCACTGGGTTTCCAAGTA
CTGCCGGTTCGAGAAACGACACAAAAATCTTGCCGCACACTGGTCGCCCG
CCTTCCCACAGATCAAGGAGGGAGACATCGTGACGGTGGGGCAGTGTCGC
CCTTTGAGCAAGACGGTGCGTTTTAATGTGTTGATGCACGAGCCCGCCAT
CAACCAGGCGCTTTCCATCAAGAAGCAGTTCCGAGTCTTTTAGAGGTGCT
TACGGCTGCCTTCTGCTGGATTGGGTGTGACGAAGACTGGAAGCAAGGTG
AGGAGAAGGAAGTAAGGAAGGGAGAACGTCGACAGGAGACAGGAGGACAG
GGGACAGGAGGACGGCAAGGCTTGTTTATTCACGGTCCCCCTCCAATAAG
AAGCAAGCTATCTAAGCATGCCATGCGGGCAGTTCTCCCCATATTTGGGT
TAGAAGGTTAGACGAAATGGAGAGAGAAGTCTTGATATGAATCCCGCTGA
TCGAAAGTTTCAATGAAGAAAAGTGTGGCTACGTGCGGGTGCCCTTTAAT
CTCCCCTAATTTCCGTGCGCAGTACATTTCGTTTGAGTCAGTGAAGACCT
CCTATACAAGCAAGCATGTACCTTTTTCATTATTGTTTGCTGGGTTCTTT
GTTCCTCGGTAATGTCGGGCCGTTGAAATACGTGCCCTCATTTCTCCCTG
AATGCAGATGCTTTCTCCCACTACCGGCCCCAACCATTGCCCACCCACAC
GCTGTTTTCCCCCCTATGAGACATTGGCAGTATCCTCGGTCCGGCTTCGT
CGAAAAGTTCACTTTCTCTTTCCTCTCTACATTCCTCCTACCTTCTCCTA
CTCCCACCCCTCAAAAAACAGTTTTACTTAAAGACCGCTCCGTCGTTAAC
TCCCCGCTATCCATTTTCCTGTTTCTCTCTCTCACTACCATAATTGATCA
ATCTCCACCAACAGCCCTCTCTTCCCCCCTCTATCTTCTAGGCTGCGTCA
ATCCACCAAAACCCCCGCAGGCTCCATCACACGCCGCATTCCAATCCCTC
CCTCCCT
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Coding sequence (CDS) from alignment at scaffold_16:322033..323589+

>mRNA_7112 ID=mRNA_7112|Name=jgi.p|Nanoce1779_2|595655|organism=Nannochloropsis oceanica|type=CDS|length=1062bp|location=Sequence derived from alignment at scaffold_16:322033..323589+ (Nannochloropsis oceanica)
ATGGTTGCTGAGAAGGGCGTCAAGCGTGGCGCCTACAAGGAGGCTGATCA
GCATGAGAAGGCTTACCAAGTGCAAAAGGGTGTCTTCATGTTCGGCAAGA
CCGGCTCCCGCAAGGAGGGCTCCAGCCGTTCGAAGCATGGTGCCCGCTGG
ACGAAGGAGGTCGGCCTAGGCTTCAAGACCCCAAAGGAGGCCAAGACCGG
TACTTATGTGGATAAGAAGTGCCCGTTCACCGGCACGGTCTCTATCCGTG
GGCGAATCCTCAAGGGCATCGTGCTGTCCACCAAGATGACTCGCACCCTT
ATCATTCGTCGGGACTACCTGCACTGGGTTTCCAAGTACTGCCGGTTCGA
GAAACGACACAAAAATCTTGCCGCACACTGGTCGCCCGCCTTCCCACAGA
TCAAGGAGGGAGACATCGTGACGGTGGGGCAGTGTCGCCCTTTGAGCAAG
ACGGTGCGTTTTAATGTGTTGATGCACGAGCCCGCCATCAACCAGGCGCT
TTCCATCAAGAAGCAGTTCCGAGTCTTTTAGATGGTTGCTGAGAAGGGCG
TCAAGCGTGGCGCCTACAAGGAGGCTGATCAGCATGAGAAGGCTTACCAA
GTGCAAAAGGGTGTCTTCATGTTCGGCAAGACCGGCTCCCGCAAGGAGGG
CTCCAGCCGTTCGAAGCATGGTGCCCGCTGGACGAAGGAGGTCGGCCTAG
GCTTCAAGACCCCAAAGGAGGCCAAGACCGGTACTTATGTGGATAAGAAG
TGCCCGTTCACCGGCACGGTCTCTATCCGTGGGCGAATCCTCAAGGGCAT
CGTGCTGTCCACCAAGATGACTCGCACCCTTATCATTCGTCGGGACTACC
TGCACTGGGTTTCCAAGTACTGCCGGTTCGAGAAACGACACAAAAATCTT
GCCGCACACTGGTCGCCCGCCTTCCCACAGATCAAGGAGGGAGACATCGT
GACGGTGGGGCAGTGTCGCCCTTTGAGCAAGACGGTGCGTTTTAATGTGT
TGATGCACGAGCCCGCCATCAACCAGGCGCTTTCCATCAAGAAGCAGTTC
CGAGTCTTTTAG
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Synonyms
Publications