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Properties
| Property Name | Value |
|---|
| TranscriptId | 544253 |
| Track | FilteredModels2 |
| ProteinId | 544167 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_16 | supercontig | scaffold_16:318952..321609 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_7111 ID=mRNA_7111|Name=jgi.p|Nanoce1779_2|544167|organism=Nannochloropsis oceanica|type=mRNA|length=2507bp
GAAGAATGAAACTTTGCGACCTCAACGAGGATATTGGCCAGTGTTCCATA
AGCTCTTCGCCCGCTTTGTGCTCTGTCTAGTGCTTGTGCTTTGTGAGACG
CGGGGGAAACGGGCTAGCCTCCTTACCGGCCACCCATCAGACCCGCCTTG
ATTGGTTGACACGCCTCTACAGCGCTCTCCCCTCCCTCTCTCCTCACAGA
TCACTAATGCCGGCCCCTGGACCTCCTAGTGCAGCAACGACCGTCGTTAA
TGCCGGGCCTCCTTTACAGCCACCTGCTTTTGCGCCCAAGACAATTTGCG
TAGCTGGTACCTATGACGGAGGCATTGTTGGTTGGGAAGTCCAGCGTAGG
ACCCAAGACGCAACAGGGCCAGCAAAACCCGCGGCGCTCAAGATGACCTT
CGCCTACACCCCCCACCAAGGCAGCGTCCGTTCCCTTGCCGTACCCAGGG
GAGGTGCGAAAGCAGGCCTCCTCCTTGTGTCGGGCGGAATGGACGAACAC
ATCCGCATGTACGACCTGCGAAAAAGAGCGGAGGCCGGAGAGCTTCTCCA
CCATAAGGGCACCATCACCGCCCTTGGCTTCGTGGGGTCATCCCACTTGC
TGAGCGGAAGCGAGGATGGCATGGTTTGCATTTGGCGTGTGTACGATTGG
AGTTTGTTGCACATTTTAGGAGGGCATAAAGGAGCTGTCACTGCGGTGGC
TTTACATCCCTCGGGAAAGCTGGCCCTGTCCACCGGGCGAGATCGGAGTT
TACGTCTCTGGGATTTAGTCAAAGGCCGGTGTGCATATATCACCAAGTTG
GAGGTAGTGGCGGAGAGCGTGAAATGGTCGGAGGACGGGGAGGCATATGT
CTTGCTGTTGGGGGATCGTCGGTTGGAAGTTCGGCGGACGGCTGATAACA
AGCCTACGGCCATCCTGGTCCACCCATCGCGGATTACCGCTCTGACATTC
CTTCCTTCCTCCTCCTCTTTCTCATCTTCGGATTCTTACGAGGAGGAGAA
GGAGAAGGAAAAAGGAAAGAAGCAGCAGCATGTGTTAACAGCGTGCGATG
ACTTGCAGCTTCGGATTGTGGATGGAGCGAGTGGAGCTATCATCTCCAGT
ATAGATGTCACCCCCTTCTGTGGGCGAATCAAGGAAGCCGTGCTCTTGCA
CGGTAGCAGTAGCAGTGGGGAGGGAGGAAGGGAGGTAGTGACGGCCTCAT
CGAATGGGAAGATTGTTATTTGGTCGATCAACGCCGCAGGCACTGTCGTA
CGGCCTGGCCCCAGAACTAGTCTCGGAGAGTGCGTGCGTATCACTTGCCT
AGCCGCCTACGCAGTCTCGGAAGGGGGGGCGGGTACAGAAGCAGCTGCGG
CGGCTGCGGGACTTGCGCAGGTGAACAAGCGAAAGAAACGGAAGCGTAAA
CATAAAGAGGAGGTGAAGGAGGGGGGCGAAGAAGTGGTGCTGGGGCATGA
TAGGGGGATGCTCAGGCACGAGAAAATGTTGAAACAGCATAAAAAGGACA
GGGCGAGCAAAGGCTCGAGTGGGGTATCGCCATTTAAACAGAAAGAACCT
ATGGGCGAAGTGGGCAGCAGCATTAGGGACGACAGCAGCAAGATTAGAGG
GGAGAGAGCGAGGAAACCGCAACAGCAGCAGCAGCAGCACCAAGAGTCAA
GCAAGAGTCAAGCAGGTTTGTAGATCGTACGCAGGTCAATAGCTATGACA
TTTTTTTTTAGAAAAAGCAGCACTATCAACAAGATAACGGGAAAAAAACG
AGGAAGCCTTCTGCTGTTAAGACTAGGAGCGGTGTCGTGAGTTTCTGACA
TTGAAATCAACTAAAAGTACCGGGGGAGGGAGTGGAATGAGAAAAGAAAA
ACAGCTAGTATTTAATGAATCTCCTCCCCTTCTCGTTCCGAGATATAAAC
TCAAAAGCACCGAGCCGTCAGTCATGCTGTCTTCAAGTATCTGTGACAAC
TGTCGAAAACCGCAACTTTGTTTTCCCCACATCCACACATACTTATACAC
ACAAAGGCATTTTCTCTTAACAATTCGTGTTTGTTTTTTGGGAGGCTGAT
ACACCTACCTCCAATTACTATTCCTGCCGGACACGCCTCATTCTATCTAG
TTACATCCTGTAACCCACCTGCTCAGCCAGGGTTGTTGGTACAAATATTC
CCTACTTTACTGCTTGTCCTTCCTCTCCTTTATGTCAGTAGTTGAGTGAA
AAGGGACTGATGATTATGGCTCCGTCATTTTATAGCTTTCTTTTAATGGG
TACATTGTCACTATATCTACTCGCGACTTATACAGGCAAAGATCGTCGAA
CTGGTTGGCCCCATGCGCCCCCAATGACACCTCTGACGCCCTCTATCCCC
ACCGCCTCCTCCGCGATACGCTCGTCTTCTTCCCCCGATGATATGTGATC
CGACTTTATGTCATCATCGCTTCCTCCATTCAACATCTCCGTCAACGGAA
TCCGTTCATGGTACCCAAGATGCTCTTTCCTCCCTCCCGACCCCCCACCA
AACGAAC back to topprotein sequence of jgi.p|Nanoce1779_2|544167 >mRNA_7111-protein ID=mRNA_7111-protein|Name=jgi.p|Nanoce1779_2|544167|organism=Nannochloropsis oceanica|type=polypeptide|length=489bp
MPAPGPPSAATTVVNAGPPLQPPAFAPKTICVAGTYDGGIVGWEVQRRTQ
DATGPAKPAALKMTFAYTPHQGSVRSLAVPRGGAKAGLLLVSGGMDEHIR
MYDLRKRAEAGELLHHKGTITALGFVGSSHLLSGSEDGMVCIWRVYDWSL
LHILGGHKGAVTAVALHPSGKLALSTGRDRSLRLWDLVKGRCAYITKLEV
VAESVKWSEDGEAYVLLLGDRRLEVRRTADNKPTAILVHPSRITALTFLP
SSSSFSSSDSYEEEKEKEKGKKQQHVLTACDDLQLRIVDGASGAIISSID
VTPFCGRIKEAVLLHGSSSSGEGGREVVTASSNGKIVIWSINAAGTVVRP
GPRTSLGECVRITCLAAYAVSEGGAGTEAAAAAAGLAQVNKRKKRKRKHK
EEVKEGGEEVVLGHDRGMLRHEKMLKQHKKDRASKGSSGVSPFKQKEPMG
EVGSSIRDDSSKIRGERARKPQQQQQQHQESSKSQAGL* back to topmRNA from alignment at scaffold_16:318952..321609- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_7111 ID=mRNA_7111|Name=jgi.p|Nanoce1779_2|544167|organism=Nannochloropsis oceanica|type=mRNA|length=2658bp|location=Sequence derived from alignment at scaffold_16:318952..321609- (Nannochloropsis oceanica)
GAAGAATGAAACTTTGCGACCTCAACGAGGATATTGGCCAGTGTTCCATA
AGCTCTTCGCCCGCTTTGTGCTCTGTCTAGTGCTTGTGCTTTGTGAGACG
CGGGGGAAACGGGCTAGCCTCCTTACCGGCCACCCATCAGACCCGCCTTG
ATTGGTTGACACGCCTCTACAGCGCTCTCCCCTCCCTCTCTCCTCACAGA
TCACTAATGCCGGCCCCTGGACCTCCTAGTGCAGCAACGACCGTCGTTAA
TGCCGGGCCTCCTTTACAGCCACCTGCTTTTGCGCCCAAGACAATTTGCG
TAGCTGGTACCTATGACGGAGGCATTGTTGGTTGGGAAGTCCAGCGTAGG
ACCCAAGACGCAACAGGGCCAGCAAAACCCGCGGCGCTCAAGATGGTACG
TACGTACGCCTTGCCCTTGCACTTAACATGGTGGGACGCGTAAGAGGAAC
TTACGGATAAAACTCTTCGTATCTCACCCAGTCCTTCTATAAAGTTGTCT
CTATGAACTCACGAGAACACTTCCTCCCACTCCACCTCGCACACAGACCT
TCGCCTACACCCCCCACCAAGGCAGCGTCCGTTCCCTTGCCGTACCCAGG
GGAGGTGCGAAAGCAGGCCTCCTCCTTGTGTCGGGCGGAATGGACGAACA
CATCCGCATGTACGACCTGCGAAAAAGAGCGGAGGCCGGAGAGCTTCTCC
ACCATAAGGGCACCATCACCGCCCTTGGCTTCGTGGGGTCATCCCACTTG
CTGAGCGGAAGCGAGGATGGCATGGTTTGCATTTGGCGTGTGTACGATTG
GAGTTTGTTGCACATTTTAGGAGGGCATAAAGGAGCTGTCACTGCGGTGG
CTTTACATCCCTCGGGAAAGCTGGCCCTGTCCACCGGGCGAGATCGGAGT
TTACGTCTCTGGGATTTAGTCAAAGGCCGGTGTGCATATATCACCAAGTT
GGAGGTAGTGGCGGAGAGCGTGAAATGGTCGGAGGACGGGGAGGCATATG
TCTTGCTGTTGGGGGATCGTCGGTTGGAAGTTCGGCGGACGGCTGATAAC
AAGCCTACGGCCATCCTGGTCCACCCATCGCGGATTACCGCTCTGACATT
CCTTCCTTCCTCCTCCTCTTTCTCATCTTCGGATTCTTACGAGGAGGAGA
AGGAGAAGGAAAAAGGAAAGAAGCAGCAGCATGTGTTAACAGCGTGCGAT
GACTTGCAGCTTCGGATTGTGGATGGAGCGAGTGGAGCTATCATCTCCAG
TATAGATGTCACCCCCTTCTGTGGGCGAATCAAGGAAGCCGTGCTCTTGC
ACGGTAGCAGTAGCAGTGGGGAGGGAGGAAGGGAGGTAGTGACGGCCTCA
TCGAATGGGAAGATTGTTATTTGGTCGATCAACGCCGCAGGCACTGTCGT
ACGGCCTGGCCCCAGAACTAGTCTCGGAGAGTGCGTGCGTATCACTTGCC
TAGCCGCCTACGCAGTCTCGGAAGGGGGGGCGGGTACAGAAGCAGCTGCG
GCGGCTGCGGGACTTGCGCAGGTGAACAAGCGAAAGAAACGGAAGCGTAA
ACATAAAGAGGAGGTGAAGGAGGGGGGCGAAGAAGTGGTGCTGGGGCATG
ATAGGGGGATGCTCAGGCACGAGAAAATGTTGAAACAGCATAAAAAGGAC
AGGGCGAGCAAAGGCTCGAGTGGGGTATCGCCATTTAAACAGAAAGAACC
TATGGGCGAAGTGGGCAGCAGCATTAGGGACGACAGCAGCAAGATTAGAG
GGGAGAGAGCGAGGAAACCGCAACAGCAGCAGCAGCAGCACCAAGAGTCA
AGCAAGAGTCAAGCAGGTTTGTAGATCGTACGCAGGTCAATAGCTATGAC
ATTTTTTTTTAGAAAAAGCAGCACTATCAACAAGATAACGGGAAAAAAAC
GAGGAAGCCTTCTGCTGTTAAGACTAGGAGCGGTGTCGTGAGTTTCTGAC
ATTGAAATCAACTAAAAGTACCGGGGGAGGGAGTGGAATGAGAAAAGAAA
AACAGCTAGTATTTAATGAATCTCCTCCCCTTCTCGTTCCGAGATATAAA
CTCAAAAGCACCGAGCCGTCAGTCATGCTGTCTTCAAGTATCTGTGACAA
CTGTCGAAAACCGCAACTTTGTTTTCCCCACATCCACACATACTTATACA
CACAAAGGCATTTTCTCTTAACAATTCGTGTTTGTTTTTTGGGAGGCTGA
TACACCTACCTCCAATTACTATTCCTGCCGGACACGCCTCATTCTATCTA
GTTACATCCTGTAACCCACCTGCTCAGCCAGGGTTGTTGGTACAAATATT
CCCTACTTTACTGCTTGTCCTTCCTCTCCTTTATGTCAGTAGTTGAGTGA
AAAGGGACTGATGATTATGGCTCCGTCATTTTATAGCTTTCTTTTAATGG
GTACATTGTCACTATATCTACTCGCGACTTATACAGGCAAAGATCGTCGA
ACTGGTTGGCCCCATGCGCCCCCAATGACACCTCTGACGCCCTCTATCCC
CACCGCCTCCTCCGCGATACGCTCGTCTTCTTCCCCCGATGATATGTGAT
CCGACTTTATGTCATCATCGCTTCCTCCATTCAACATCTCCGTCAACGGA
ATCCGTTCATGGTACCCAAGATGCTCTTTCCTCCCTCCCGACCCCCCACC
AAACGAAC back to topCoding sequence (CDS) from alignment at scaffold_16:318952..321609- >mRNA_7111 ID=mRNA_7111|Name=jgi.p|Nanoce1779_2|544167|organism=Nannochloropsis oceanica|type=CDS|length=2934bp|location=Sequence derived from alignment at scaffold_16:318952..321609- (Nannochloropsis oceanica)
ACCTTCGCCTACACCCCCCACCAAGGCAGCGTCCGTTCCCTTGCCGTACC
CAGGGGAGGTGCGAAAGCAGGCCTCCTCCTTGTGTCGGGCGGAATGGACG
AACACATCCGCATGTACGACCTGCGAAAAAGAGCGGAGGCCGGAGAGCTT
CTCCACCATAAGGGCACCATCACCGCCCTTGGCTTCGTGGGGTCATCCCA
CTTGCTGAGCGGAAGCGAGGATGGCATGGTTTGCATTTGGCGTGTGTACG
ATTGGAGTTTGTTGCACATTTTAGGAGGGCATAAAGGAGCTGTCACTGCG
GTGGCTTTACATCCCTCGGGAAAGCTGGCCCTGTCCACCGGGCGAGATCG
GAGTTTACGTCTCTGGGATTTAGTCAAAGGCCGGTGTGCATATATCACCA
AGTTGGAGGTAGTGGCGGAGAGCGTGAAATGGTCGGAGGACGGGGAGGCA
TATGTCTTGCTGTTGGGGGATCGTCGGTTGGAAGTTCGGCGGACGGCTGA
TAACAAGCCTACGGCCATCCTGGTCCACCCATCGCGGATTACCGCTCTGA
CATTCCTTCCTTCCTCCTCCTCTTTCTCATCTTCGGATTCTTACGAGGAG
GAGAAGGAGAAGGAAAAAGGAAAGAAGCAGCAGCATGTGTTAACAGCGTG
CGATGACTTGCAGCTTCGGATTGTGGATGGAGCGAGTGGAGCTATCATCT
CCAGTATAGATGTCACCCCCTTCTGTGGGCGAATCAAGGAAGCCGTGCTC
TTGCACGGTAGCAGTAGCAGTGGGGAGGGAGGAAGGGAGGTAGTGACGGC
CTCATCGAATGGGAAGATTGTTATTTGGTCGATCAACGCCGCAGGCACTG
TCGTACGGCCTGGCCCCAGAACTAGTCTCGGAGAGTGCGTGCGTATCACT
TGCCTAGCCGCCTACGCAGTCTCGGAAGGGGGGGCGGGTACAGAAGCAGC
TGCGGCGGCTGCGGGACTTGCGCAGGTGAACAAGCGAAAGAAACGGAAGC
GTAAACATAAAGAGGAGGTGAAGGAGGGGGGCGAAGAAGTGGTGCTGGGG
CATGATAGGGGGATGCTCAGGCACGAGAAAATGTTGAAACAGCATAAAAA
GGACAGGGCGAGCAAAGGCTCGAGTGGGGTATCGCCATTTAAACAGAAAG
AACCTATGGGCGAAGTGGGCAGCAGCATTAGGGACGACAGCAGCAAGATT
AGAGGGGAGAGAGCGAGGAAACCGCAACAGCAGCAGCAGCAGCACCAAGA
GTCAAGCAAGAGTCAAGCAGGTTTGTAGATGCCGGCCCCTGGACCTCCTA
GTGCAGCAACGACCGTCGTTAATGCCGGGCCTCCTTTACAGCCACCTGCT
TTTGCGCCCAAGACAATTTGCGTAGCTGGTACCTATGACGGAGGCATTGT
TGGTTGGGAAGTCCAGCGTAGGACCCAAGACGCAACAGGGCCAGCAAAAC
CCGCGGCGCTCAAGATGACCTTCGCCTACACCCCCCACCAAGGCAGCGTC
CGTTCCCTTGCCGTACCCAGGGGAGGTGCGAAAGCAGGCCTCCTCCTTGT
GTCGGGCGGAATGGACGAACACATCCGCATGTACGACCTGCGAAAAAGAG
CGGAGGCCGGAGAGCTTCTCCACCATAAGGGCACCATCACCGCCCTTGGC
TTCGTGGGGTCATCCCACTTGCTGAGCGGAAGCGAGGATGGCATGGTTTG
CATTTGGCGTGTGTACGATTGGAGTTTGTTGCACATTTTAGGAGGGCATA
AAGGAGCTGTCACTGCGGTGGCTTTACATCCCTCGGGAAAGCTGGCCCTG
TCCACCGGGCGAGATCGGAGTTTACGTCTCTGGGATTTAGTCAAAGGCCG
GTGTGCATATATCACCAAGTTGGAGGTAGTGGCGGAGAGCGTGAAATGGT
CGGAGGACGGGGAGGCATATGTCTTGCTGTTGGGGGATCGTCGGTTGGAA
GTTCGGCGGACGGCTGATAACAAGCCTACGGCCATCCTGGTCCACCCATC
GCGGATTACCGCTCTGACATTCCTTCCTTCCTCCTCCTCTTTCTCATCTT
CGGATTCTTACGAGGAGGAGAAGGAGAAGGAAAAAGGAAAGAAGCAGCAG
CATGTGTTAACAGCGTGCGATGACTTGCAGCTTCGGATTGTGGATGGAGC
GAGTGGAGCTATCATCTCCAGTATAGATGTCACCCCCTTCTGTGGGCGAA
TCAAGGAAGCCGTGCTCTTGCACGGTAGCAGTAGCAGTGGGGAGGGAGGA
AGGGAGGTAGTGACGGCCTCATCGAATGGGAAGATTGTTATTTGGTCGAT
CAACGCCGCAGGCACTGTCGTACGGCCTGGCCCCAGAACTAGTCTCGGAG
AGTGCGTGCGTATCACTTGCCTAGCCGCCTACGCAGTCTCGGAAGGGGGG
GCGGGTACAGAAGCAGCTGCGGCGGCTGCGGGACTTGCGCAGGTGAACAA
GCGAAAGAAACGGAAGCGTAAACATAAAGAGGAGGTGAAGGAGGGGGGCG
AAGAAGTGGTGCTGGGGCATGATAGGGGGATGCTCAGGCACGAGAAAATG
TTGAAACAGCATAAAAAGGACAGGGCGAGCAAAGGCTCGAGTGGGGTATC
GCCATTTAAACAGAAAGAACCTATGGGCGAAGTGGGCAGCAGCATTAGGG
ACGACAGCAGCAAGATTAGAGGGGAGAGAGCGAGGAAACCGCAACAGCAG
CAGCAGCAGCACCAAGAGTCAAGCAAGAGTCAAGCAGGTTTGTAGATGCC
GGCCCCTGGACCTCCTAGTGCAGCAACGACCGTCGTTAATGCCGGGCCTC
CTTTACAGCCACCTGCTTTTGCGCCCAAGACAATTTGCGTAGCTGGTACC
TATGACGGAGGCATTGTTGGTTGGGAAGTCCAGCGTAGGACCCAAGACGC
AACAGGGCCAGCAAAACCCGCGGCGCTCAAGATG back to top
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