jgi.p|Nanoce1779_2|573875, mRNA_711 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|573875
Unique Name	mRNA_711
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2127
Alignment location	scaffold_2:252530..254656 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	573961
Track	FilteredModels2
ProteinId	573875

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:252530..254656 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573875	gene_711	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573875	mRNA_711-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_711	CDS_711	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:252530..254656+
coding sequence from alignment at scaffold_2:252530..254656+

mRNA sequence

>mRNA_711 ID=mRNA_711|Name=jgi.p|Nanoce1779_2|573875|organism=Nannochloropsis oceanica|type=mRNA|length=2127bp
AGACGACAACACAGGCCCCTTCAGCCACTCTGCAGCCAACATGGGGTCTG
ATAACAGCGGAAAGCGGGCCAAAACCGCCCGGCTCCTTGTGCCCTTGATG
GCGGTGGTCATCCTTTTTCTTGGCAGCCTTGTCTTCTTTGTGACAGAGTC
CCCCAACCAAGTCCGGGAAGGTGGCGAAGAAGAGGCCGCCCAACAAGACT
TCAAGACCCGGTCTTTTGCGAAGATGAACGACGTCTTCATCAAAGCGCCC
CAGCAAGCTCTCAAATATGCGTCGGAGGAGGCTGATAAATTTGTTCACAA
CGTTCGGCCGGCCGGGCTGGCTCCTCGGGGCGGGCTGGAGGAGGAGGAGG
AGGCAGACGAACGCCCGGCCAACCCAGTGGCGAGCGTGGCGCACGTCATC
AAGACCTTTGAACGATATCTGCAGGAATTGCATGCCGAATTTGACAAGGT
GGTGGTGGGTGATAACCCGGAGATCACTGCGGAGGAAGTATGGGAGGCAT
TTGTGGCTTTGACGCAAGAGCACGTGCTGCCGCTCGACACTGAGTACGCA
CCCCCTGATGTGGACCCTTCGGGGGACACCACCTTCATCTCCATGGCCAC
CTACCGCGATGAGAACTGTCCCAATACCCTGACAGAAGCTTTCAAGCACG
CAAATAAGCCCGAGGGCCTGTACGTGGGTTTGGTGGAGCAAAATTGCTAT
TCTGACTGCCGGACAGGCGTGCTCAAGGACATGAGCATTCGCGACGCCCC
GCCCGACGTGGACTGTGTCAAGACCTTTTGCGATGGAGAGATGGGAAAGT
ACTGCGATCATTTGCGTGTGTTGCGGATCAATGAGAGCGAGTCGCTTGGG
CCGGCAATGGCGCGGTATTTTGCAGCTAAGCTCTGGCATGGTGAGTCTTA
TTACATGCAGATTGACGCGCATATGTTCTTCGCTGAAAATTGGGATTTGG
AGCTCAAGAAGATGATGGCTGTGGCCGATCGTCCGAACCCTATAATAACC
AATTATCCACCACCGGATGGGTGGAAGTGGGAGAGGACTGTGGGTTTGAG
GATGTGTGAGGGCTATTTCACTGAACCGGGTATCGAGGCCCAGATTGTGC
GATTGGAGGGCTCGAGAGAGTTCGAGTCTACCGAGCCAGCGACGCCACGG
TTTGCACCTTATATTGCGGCTGGCTTCTTTTTCACGAGTGGGCAGTTCGT
GGTGGACGTGCCGTTCGACCCGTATTTGCCTTGGGTGTTTATGGGGGAAG
AGATTTTGTTGTCTTCGCGGGCGTTCACGAATGGGTACCATATTTTCTCG
CCTACGATAAATGTGCTCGCCCATATCTATGTGAGGCGAAACAAGCCCAA
ATTTTGGGAGACTGTGGGGAGGGCTTTCAAGAGGCCGGGATTCCATAACA
GATTGAACACAATTGTGATTCGCCGGGTGAAAAATTTGTTGGAGTATCCC
GAGACCGACGATGAGCTGGTGTGGCCTAAATCACTGATTGTGGATAAACC
GATGTATGGGATGGGGACGGAGAGGACTCTAGCTCAGTATATGGAGATGG
TGGGTCTTGATCAGGTGGCCAAGACGAGCAAGAAATTAGAGTGGTGTCAC
AAAGGGGAGCTGCCGCCGGTTCTGCTGAGGATTGAGGAGGAGGAGCGGAT
GGCGGGAAAGGAGCTGGGAAAGAGAAAACGGAGGAGGAAGGAGAGGAAAA
GCGTGGGGACAGCAGTGGATAGAAAATAGGGTGAGCGAGTGATTGGGTTA
CAAATGATACATATAGACGAAGGAAAGAGGATGCCTTGGCGGTCGCAATT
GTTTTTGGGTAATACAAAAGTAGATCGGGAAAAACTTTAGCGCGGGGGGG
GTGAGGGGGGATAGGTAACGAGAGGAAACAGACAAGAGAGATGAAAGAGA
TCCGAACCACAGTTAGGAAGTACAATTTACACACTTTAAAGGGAGAGGAG
GTGAGGCACGGGAGGAAAGAAAGTGTAGCGGAGAATGTGAGGGTTGGCAC
TACTGTTGATGATGTGTTCATGCCATTCTTAGGATGAATCGAATGAACTG
TCATAGTCCAGTAAAAAATGAGCGCATGAGAACGCAATTAAGACTTACAG
CAATGCGACCAAATTAAGATATATGCC

protein sequence of jgi.p|Nanoce1779_2|573875

>mRNA_711-protein ID=mRNA_711-protein|Name=jgi.p|Nanoce1779_2|573875|organism=Nannochloropsis oceanica|type=polypeptide|length=563bp
MGSDNSGKRAKTARLLVPLMAVVILFLGSLVFFVTESPNQVREGGEEEAA
QQDFKTRSFAKMNDVFIKAPQQALKYASEEADKFVHNVRPAGLAPRGGLE
EEEEADERPANPVASVAHVIKTFERYLQELHAEFDKVVVGDNPEITAEEV
WEAFVALTQEHVLPLDTEYAPPDVDPSGDTTFISMATYRDENCPNTLTEA
FKHANKPEGLYVGLVEQNCYSDCRTGVLKDMSIRDAPPDVDCVKTFCDGE
MGKYCDHLRVLRINESESLGPAMARYFAAKLWHGESYYMQIDAHMFFAEN
WDLELKKMMAVADRPNPIITNYPPPDGWKWERTVGLRMCEGYFTEPGIEA
QIVRLEGSREFESTEPATPRFAPYIAAGFFFTSGQFVVDVPFDPYLPWVF
MGEEILLSSRAFTNGYHIFSPTINVLAHIYVRRNKPKFWETVGRAFKRPG
FHNRLNTIVIRRVKNLLEYPETDDELVWPKSLIVDKPMYGMGTERTLAQY
MEMVGLDQVAKTSKKLEWCHKGELPPVLLRIEEEERMAGKELGKRKRRRK
ERKSVGTAVDRK*

mRNA from alignment at scaffold_2:252530..254656+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_711 ID=mRNA_711|Name=jgi.p|Nanoce1779_2|573875|organism=Nannochloropsis oceanica|type=mRNA|length=2127bp|location=Sequence derived from alignment at scaffold_2:252530..254656+ (Nannochloropsis oceanica)
AGACGACAACACAGGCCCCTTCAGCCACTCTGCAGCCAACATGGGGTCTG
ATAACAGCGGAAAGCGGGCCAAAACCGCCCGGCTCCTTGTGCCCTTGATG
GCGGTGGTCATCCTTTTTCTTGGCAGCCTTGTCTTCTTTGTGACAGAGTC
CCCCAACCAAGTCCGGGAAGGTGGCGAAGAAGAGGCCGCCCAACAAGACT
TCAAGACCCGGTCTTTTGCGAAGATGAACGACGTCTTCATCAAAGCGCCC
CAGCAAGCTCTCAAATATGCGTCGGAGGAGGCTGATAAATTTGTTCACAA
CGTTCGGCCGGCCGGGCTGGCTCCTCGGGGCGGGCTGGAGGAGGAGGAGG
AGGCAGACGAACGCCCGGCCAACCCAGTGGCGAGCGTGGCGCACGTCATC
AAGACCTTTGAACGATATCTGCAGGAATTGCATGCCGAATTTGACAAGGT
GGTGGTGGGTGATAACCCGGAGATCACTGCGGAGGAAGTATGGGAGGCAT
TTGTGGCTTTGACGCAAGAGCACGTGCTGCCGCTCGACACTGAGTACGCA
CCCCCTGATGTGGACCCTTCGGGGGACACCACCTTCATCTCCATGGCCAC
CTACCGCGATGAGAACTGTCCCAATACCCTGACAGAAGCTTTCAAGCACG
CAAATAAGCCCGAGGGCCTGTACGTGGGTTTGGTGGAGCAAAATTGCTAT
TCTGACTGCCGGACAGGCGTGCTCAAGGACATGAGCATTCGCGACGCCCC
GCCCGACGTGGACTGTGTCAAGACCTTTTGCGATGGAGAGATGGGAAAGT
ACTGCGATCATTTGCGTGTGTTGCGGATCAATGAGAGCGAGTCGCTTGGG
CCGGCAATGGCGCGGTATTTTGCAGCTAAGCTCTGGCATGGTGAGTCTTA
TTACATGCAGATTGACGCGCATATGTTCTTCGCTGAAAATTGGGATTTGG
AGCTCAAGAAGATGATGGCTGTGGCCGATCGTCCGAACCCTATAATAACC
AATTATCCACCACCGGATGGGTGGAAGTGGGAGAGGACTGTGGGTTTGAG
GATGTGTGAGGGCTATTTCACTGAACCGGGTATCGAGGCCCAGATTGTGC
GATTGGAGGGCTCGAGAGAGTTCGAGTCTACCGAGCCAGCGACGCCACGG
TTTGCACCTTATATTGCGGCTGGCTTCTTTTTCACGAGTGGGCAGTTCGT
GGTGGACGTGCCGTTCGACCCGTATTTGCCTTGGGTGTTTATGGGGGAAG
AGATTTTGTTGTCTTCGCGGGCGTTCACGAATGGGTACCATATTTTCTCG
CCTACGATAAATGTGCTCGCCCATATCTATGTGAGGCGAAACAAGCCCAA
ATTTTGGGAGACTGTGGGGAGGGCTTTCAAGAGGCCGGGATTCCATAACA
GATTGAACACAATTGTGATTCGCCGGGTGAAAAATTTGTTGGAGTATCCC
GAGACCGACGATGAGCTGGTGTGGCCTAAATCACTGATTGTGGATAAACC
GATGTATGGGATGGGGACGGAGAGGACTCTAGCTCAGTATATGGAGATGG
TGGGTCTTGATCAGGTGGCCAAGACGAGCAAGAAATTAGAGTGGTGTCAC
AAAGGGGAGCTGCCGCCGGTTCTGCTGAGGATTGAGGAGGAGGAGCGGAT
GGCGGGAAAGGAGCTGGGAAAGAGAAAACGGAGGAGGAAGGAGAGGAAAA
GCGTGGGGACAGCAGTGGATAGAAAATAGGGTGAGCGAGTGATTGGGTTA
CAAATGATACATATAGACGAAGGAAAGAGGATGCCTTGGCGGTCGCAATT
GTTTTTGGGTAATACAAAAGTAGATCGGGAAAAACTTTAGCGCGGGGGGG
GTGAGGGGGGATAGGTAACGAGAGGAAACAGACAAGAGAGATGAAAGAGA
TCCGAACCACAGTTAGGAAGTACAATTTACACACTTTAAAGGGAGAGGAG
GTGAGGCACGGGAGGAAAGAAAGTGTAGCGGAGAATGTGAGGGTTGGCAC
TACTGTTGATGATGTGTTCATGCCATTCTTAGGATGAATCGAATGAACTG
TCATAGTCCAGTAAAAAATGAGCGCATGAGAACGCAATTAAGACTTACAG
CAATGCGACCAAATTAAGATATATGCC

Coding sequence (CDS) from alignment at scaffold_2:252530..254656+

>mRNA_711 ID=mRNA_711|Name=jgi.p|Nanoce1779_2|573875|organism=Nannochloropsis oceanica|type=CDS|length=1689bp|location=Sequence derived from alignment at scaffold_2:252530..254656+ (Nannochloropsis oceanica)
ATGGGGTCTGATAACAGCGGAAAGCGGGCCAAAACCGCCCGGCTCCTTGT
GCCCTTGATGGCGGTGGTCATCCTTTTTCTTGGCAGCCTTGTCTTCTTTG
TGACAGAGTCCCCCAACCAAGTCCGGGAAGGTGGCGAAGAAGAGGCCGCC
CAACAAGACTTCAAGACCCGGTCTTTTGCGAAGATGAACGACGTCTTCAT
CAAAGCGCCCCAGCAAGCTCTCAAATATGCGTCGGAGGAGGCTGATAAAT
TTGTTCACAACGTTCGGCCGGCCGGGCTGGCTCCTCGGGGCGGGCTGGAG
GAGGAGGAGGAGGCAGACGAACGCCCGGCCAACCCAGTGGCGAGCGTGGC
GCACGTCATCAAGACCTTTGAACGATATCTGCAGGAATTGCATGCCGAAT
TTGACAAGGTGGTGGTGGGTGATAACCCGGAGATCACTGCGGAGGAAGTA
TGGGAGGCATTTGTGGCTTTGACGCAAGAGCACGTGCTGCCGCTCGACAC
TGAGTACGCACCCCCTGATGTGGACCCTTCGGGGGACACCACCTTCATCT
CCATGGCCACCTACCGCGATGAGAACTGTCCCAATACCCTGACAGAAGCT
TTCAAGCACGCAAATAAGCCCGAGGGCCTGTACGTGGGTTTGGTGGAGCA
AAATTGCTATTCTGACTGCCGGACAGGCGTGCTCAAGGACATGAGCATTC
GCGACGCCCCGCCCGACGTGGACTGTGTCAAGACCTTTTGCGATGGAGAG
ATGGGAAAGTACTGCGATCATTTGCGTGTGTTGCGGATCAATGAGAGCGA
GTCGCTTGGGCCGGCAATGGCGCGGTATTTTGCAGCTAAGCTCTGGCATG
GTGAGTCTTATTACATGCAGATTGACGCGCATATGTTCTTCGCTGAAAAT
TGGGATTTGGAGCTCAAGAAGATGATGGCTGTGGCCGATCGTCCGAACCC
TATAATAACCAATTATCCACCACCGGATGGGTGGAAGTGGGAGAGGACTG
TGGGTTTGAGGATGTGTGAGGGCTATTTCACTGAACCGGGTATCGAGGCC
CAGATTGTGCGATTGGAGGGCTCGAGAGAGTTCGAGTCTACCGAGCCAGC
GACGCCACGGTTTGCACCTTATATTGCGGCTGGCTTCTTTTTCACGAGTG
GGCAGTTCGTGGTGGACGTGCCGTTCGACCCGTATTTGCCTTGGGTGTTT
ATGGGGGAAGAGATTTTGTTGTCTTCGCGGGCGTTCACGAATGGGTACCA
TATTTTCTCGCCTACGATAAATGTGCTCGCCCATATCTATGTGAGGCGAA
ACAAGCCCAAATTTTGGGAGACTGTGGGGAGGGCTTTCAAGAGGCCGGGA
TTCCATAACAGATTGAACACAATTGTGATTCGCCGGGTGAAAAATTTGTT
GGAGTATCCCGAGACCGACGATGAGCTGGTGTGGCCTAAATCACTGATTG
TGGATAAACCGATGTATGGGATGGGGACGGAGAGGACTCTAGCTCAGTAT
ATGGAGATGGTGGGTCTTGATCAGGTGGCCAAGACGAGCAAGAAATTAGA
GTGGTGTCACAAAGGGGAGCTGCCGCCGGTTCTGCTGAGGATTGAGGAGG
AGGAGCGGATGGCGGGAAAGGAGCTGGGAAAGAGAAAACGGAGGAGGAAG
GAGAGGAAAAGCGTGGGGACAGCAGTGGATAGAAAATAG

Synonyms

Publications