jgi.p|Nanoce1779_2|595632, mRNA_7105 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595632
Unique NamemRNA_7105
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length892
Alignment locationscaffold_16:301524..302933 +

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Properties
Property NameValue
TranscriptId595718
TrackFilteredModels2
ProteinId595632
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:301524..302933 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595632gene_7105Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595632mRNA_7105-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7105CDS_7105Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7105 ID=mRNA_7105|Name=jgi.p|Nanoce1779_2|595632|organism=Nannochloropsis oceanica|type=mRNA|length=892bp
CAGGTCAACTTCCTTCTTACCATCCGAGAAAGATGGGAGAAGCACAAGTA
GGCGCGCATGGGATCATCATGATCATTGCCTTTCTCTTCATGACGCAACT
CGCTGAGGTGATCGCCTGGTGGGCGGCCAATAAGACGAACCTCCGCTCCA
ATTACTTCAAAGCCGTCGAACACGGGACCAAGCTCTGGAACGCGCACCGG
GCGCTCAATGGGGGTGCCTTTGTCCTAGGGTTGATTGGTATGATCATCAT
ATTGAGTGCTGAGGAATTTAAGGAAGGACTAGGGTCGAAGGAGCGACATG
TGATTTACGGCTTTGTCATTATCGTGGCGATGTTTTTGCAGGTTCTGTTT
CGGGTGGCTTATCCTGATGATAAGACCAAATGGATCCATCGATGGTTCGG
TCGCGCCATTAACTTGTGGGCCTTCTTCGTGGCCTTCACTGGCTACGAAC
TCGCCAACTACGGGACCAACGACGGCACAGACGGAGGAGGGGAGGACTTC
GATAACATTGTGATCATTTTCTGCTTCTGGGCTATCTTCAGATTTGGCAT
TTGGGCCTTCTTTTTCACCATGCGCAAGATGGGCAAGGTAAGTGCATGCA
TTCACAAGGGAAGGCAGAATGCCCCTCTTCCCCTCATCACGAGCAGCTTT
CTTACCTCTTCCGAGCCCACCTTTTTCCCTCAACTTCTGCTACTTGCACA
CATTCCCCCGAAACCATGGTAGGCACAGAAGTACGACGATCTAGGTAGCG
AGGCTGGTATTCAGTTGCCCACCAGTGAGGTGGCGTCACCCCCGACTACT
GCCTAAACCCAACAAGTCCTAGAGGATGTCAGGCTGCATGCGATAGTTCT
ATAGGAGTGCAGGAAAAAAGAACTAGACATGGTGGCTTTTTT
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protein sequence of jgi.p|Nanoce1779_2|595632

>mRNA_7105-protein ID=mRNA_7105-protein|Name=jgi.p|Nanoce1779_2|595632|organism=Nannochloropsis oceanica|type=polypeptide|length=230bp
MGEAQVGAHGIIMIIAFLFMTQLAEVIAWWAANKTNLRSNYFKAVEHGTK
LWNAHRALNGGAFVLGLIGMIIILSAEEFKEGLGSKERHVIYGFVIIVAM
FLQVLFRVAYPDDKTKWIHRWFGRAINLWAFFVAFTGYELANYGTNDGTD
GGGEDFDNIVIIFCFWAIFRFGIWAFFFTMRKMGKVSACIHKGRQNAPLP
LITSSFLTSSEPTFFPQLLLLAHIPPKPW*
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mRNA from alignment at scaffold_16:301524..302933+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7105 ID=mRNA_7105|Name=jgi.p|Nanoce1779_2|595632|organism=Nannochloropsis oceanica|type=mRNA|length=1410bp|location=Sequence derived from alignment at scaffold_16:301524..302933+ (Nannochloropsis oceanica)
CAGGTCAACTTCCTTCTTACCATCCGAGAAAGATGGGAGAAGCACAAGTA
GGCGCGCATGGGATCATCATGATCATTGCCTTTCTCTTCATGACGCAACT
CGCTGAGGTGATCGCCTGGTGGGCGGCCAATAAGGTACGCGTTTGTACGC
GTGAGCGAGAGCGAAAGGCTTGTGTAAGCTTGAGTCACCAATATAAGAAG
CAGAGCTAACAGCATCTTTCTTTCTTTTGTCATCCCTTTTCTTCACTTCT
TGACCAGACGAACCTCCGCTCCAATTACTTCAAAGCCGTCGAACACGGGA
CCAAGCTCTGGAACGCGCACCGGGCGCTCAATGGGGGTGCCTTTGTCCTA
GGGTTGATTGGTATGATCATCATATTGAGTGCTGAGGAATTTAAGGAAGG
ACTAGGGTCGAAGGAGCGACATGTGATTTACGGCTTTGTCATTATCGTGG
CGATGTTTTTGCAGGTTCTGTTTCGGGTGGCTTATCCTGATGTAAGTTTC
ATCAGTAAGAAGGGAGGGAATGGTTGAAGGGATGAGGGATGGAGAAAGAC
ACGCGTATACAAAGCGCGTAAGTTTTATGCATATGTCCTGTCGCTCCTTA
CTCGCACGTACTCATATGTGTACACAGGATAAGACCAAATGGATCCATCG
ATGGTTCGGTCGCGCCATTAACTTGTGGGCCTTCTTCGTGGCCTTCACTG
GCTACGAACTCGCCAACTACGGGACCAACGACGGCACAGACGGAGGAGGG
GAGGACTTCGATAACATTGTGATCATTTTCTGCTTCTGGGCTATCTTCAG
ATTTGGGTGCGTATCGCTGCTGCCTAGATCGTTTTAATTCCTCGGGTTAC
CTCACTCATCTCTTTTTCTCGCTCTCGCAATCTCTCCTTCTTTCCCTTTC
TCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTC
TCATACACACACAAACACACACACGGTCGCCCGCACACACACACACACAC
ACACACACACACACACACACACACACACGCACGCATACACGAAATGTCAA
TCTCCCTGAAAATAGCATTTGGGCCTTCTTTTTCACCATGCGCAAGATGG
GCAAGGTAAGTGCATGCATTCACAAGGGAAGGCAGAATGCCCCTCTTCCC
CTCATCACGAGCAGCTTTCTTACCTCTTCCGAGCCCACCTTTTTCCCTCA
ACTTCTGCTACTTGCACACATTCCCCCGAAACCATGGTAGGCACAGAAGT
ACGACGATCTAGGTAGCGAGGCTGGTATTCAGTTGCCCACCAGTGAGGTG
GCGTCACCCCCGACTACTGCCTAAACCCAACAAGTCCTAGAGGATGTCAG
GCTGCATGCGATAGTTCTATAGGAGTGCAGGAAAAAAGAACTAGACATGG
TGGCTTTTTT
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Coding sequence (CDS) from alignment at scaffold_16:301524..302933+

>mRNA_7105 ID=mRNA_7105|Name=jgi.p|Nanoce1779_2|595632|organism=Nannochloropsis oceanica|type=CDS|length=2760bp|location=Sequence derived from alignment at scaffold_16:301524..302933+ (Nannochloropsis oceanica)
ATGGGAGAAGCACAAGTAGGCGCGCATGGGATCATCATGATCATTGCCTT
TCTCTTCATGACGCAACTCGCTGAGGTGATCGCCTGGTGGGCGGCCAATA
AGACGAACCTCCGCTCCAATTACTTCAAAGCCGTCGAACACGGGACCAAG
CTCTGGAACGCGCACCGGGCGCTCAATGGGGGTGCCTTTGTCCTAGGGTT
GATTGGTATGATCATCATATTGAGTGCTGAGGAATTTAAGGAAGGACTAG
GGTCGAAGGAGCGACATGTGATTTACGGCTTTGTCATTATCGTGGCGATG
TTTTTGCAGGTTCTGTTTCGGGTGGCTTATCCTGATGATAAGACCAAATG
GATCCATCGATGGTTCGGTCGCGCCATTAACTTGTGGGCCTTCTTCGTGG
CCTTCACTGGCTACGAACTCGCCAACTACGGGACCAACGACGGCACAGAC
GGAGGAGGGGAGGACTTCGATAACATTGTGATCATTTTCTGCTTCTGGGC
TATCTTCAGATTTGGCATTTGGGCCTTCTTTTTCACCATGCGCAAGATGG
GCAAGGTAAGTGCATGCATTCACAAGGGAAGGCAGAATGCCCCTCTTCCC
CTCATCACGAGCAGCTTTCTTACCTCTTCCGAGCCCACCTTTTTCCCTCA
ACTTCTGCTACTTGCACACATTCCCCCGAAACCATGGTAGATGGGAGAAG
CACAAGTAGGCGCGCATGGGATCATCATGATCATTGCCTTTCTCTTCATG
ACGCAACTCGCTGAGGTGATCGCCTGGTGGGCGGCCAATAAGACGAACCT
CCGCTCCAATTACTTCAAAGCCGTCGAACACGGGACCAAGCTCTGGAACG
CGCACCGGGCGCTCAATGGGGGTGCCTTTGTCCTAGGGTTGATTGGTATG
ATCATCATATTGAGTGCTGAGGAATTTAAGGAAGGACTAGGGTCGAAGGA
GCGACATGTGATTTACGGCTTTGTCATTATCGTGGCGATGTTTTTGCAGG
TTCTGTTTCGGGTGGCTTATCCTGATGATAAGACCAAATGGATCCATCGA
TGGTTCGGTCGCGCCATTAACTTGTGGGCCTTCTTCGTGGCCTTCACTGG
CTACGAACTCGCCAACTACGGGACCAACGACGGCACAGACGGAGGAGGGG
AGGACTTCGATAACATTGTGATCATTTTCTGCTTCTGGGCTATCTTCAGA
TTTGGCATTTGGGCCTTCTTTTTCACCATGCGCAAGATGGGCAAGGTAAG
TGCATGCATTCACAAGGGAAGGCAGAATGCCCCTCTTCCCCTCATCACGA
GCAGCTTTCTTACCTCTTCCGAGCCCACCTTTTTCCCTCAACTTCTGCTA
CTTGCACACATTCCCCCGAAACCATGGTAGATGGGAGAAGCACAAGTAGG
CGCGCATGGGATCATCATGATCATTGCCTTTCTCTTCATGACGCAACTCG
CTGAGGTGATCGCCTGGTGGGCGGCCAATAAGACGAACCTCCGCTCCAAT
TACTTCAAAGCCGTCGAACACGGGACCAAGCTCTGGAACGCGCACCGGGC
GCTCAATGGGGGTGCCTTTGTCCTAGGGTTGATTGGTATGATCATCATAT
TGAGTGCTGAGGAATTTAAGGAAGGACTAGGGTCGAAGGAGCGACATGTG
ATTTACGGCTTTGTCATTATCGTGGCGATGTTTTTGCAGGTTCTGTTTCG
GGTGGCTTATCCTGATGATAAGACCAAATGGATCCATCGATGGTTCGGTC
GCGCCATTAACTTGTGGGCCTTCTTCGTGGCCTTCACTGGCTACGAACTC
GCCAACTACGGGACCAACGACGGCACAGACGGAGGAGGGGAGGACTTCGA
TAACATTGTGATCATTTTCTGCTTCTGGGCTATCTTCAGATTTGGCATTT
GGGCCTTCTTTTTCACCATGCGCAAGATGGGCAAGGTAAGTGCATGCATT
CACAAGGGAAGGCAGAATGCCCCTCTTCCCCTCATCACGAGCAGCTTTCT
TACCTCTTCCGAGCCCACCTTTTTCCCTCAACTTCTGCTACTTGCACACA
TTCCCCCGAAACCATGGTAGATGGGAGAAGCACAAGTAGGCGCGCATGGG
ATCATCATGATCATTGCCTTTCTCTTCATGACGCAACTCGCTGAGGTGAT
CGCCTGGTGGGCGGCCAATAAGACGAACCTCCGCTCCAATTACTTCAAAG
CCGTCGAACACGGGACCAAGCTCTGGAACGCGCACCGGGCGCTCAATGGG
GGTGCCTTTGTCCTAGGGTTGATTGGTATGATCATCATATTGAGTGCTGA
GGAATTTAAGGAAGGACTAGGGTCGAAGGAGCGACATGTGATTTACGGCT
TTGTCATTATCGTGGCGATGTTTTTGCAGGTTCTGTTTCGGGTGGCTTAT
CCTGATGATAAGACCAAATGGATCCATCGATGGTTCGGTCGCGCCATTAA
CTTGTGGGCCTTCTTCGTGGCCTTCACTGGCTACGAACTCGCCAACTACG
GGACCAACGACGGCACAGACGGAGGAGGGGAGGACTTCGATAACATTGTG
ATCATTTTCTGCTTCTGGGCTATCTTCAGATTTGGCATTTGGGCCTTCTT
TTTCACCATGCGCAAGATGGGCAAGGTAAGTGCATGCATTCACAAGGGAA
GGCAGAATGCCCCTCTTCCCCTCATCACGAGCAGCTTTCTTACCTCTTCC
GAGCCCACCTTTTTCCCTCAACTTCTGCTACTTGCACACATTCCCCCGAA
ACCATGGTAG
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Synonyms
Publications