jgi.p|Nanoce1779_2|102806, mRNA_7104 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|102806
Unique NamemRNA_7104
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length603
Alignment locationscaffold_16:300121..300723 -

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Properties
Property NameValue
TranscriptId102892
TrackFilteredModels2
ProteinId102806
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:300121..300723 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|102806gene_7104Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|102806mRNA_7104-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7104CDS_7104Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7104 ID=mRNA_7104|Name=jgi.p|Nanoce1779_2|102806|organism=Nannochloropsis oceanica|type=mRNA|length=603bp
CTCGTCGTTGTCGTGCCAGCCTTCACCTCTTTTGCCTTGACTATCACCTG
CGCCACGCTCCTGCTCCTGACATTCAGTTCTGGCCTTGTAACCATGCTCG
TTGACCCATCAGATGCGTCGGTCTTGAATAAGGCAGTTTGACTCCGGATG
ACGATATTGAGAAGAGCACTAGTTCGAGCCACCCATACCAGCACCCGCAA
CAACATCAGCAAGGTAGCGTGTACTATGGCATGTGCCAAGCCAATGTACA
AAAAGGAACCGCACATTGTCGCATCTGCTCGAAATTTACCACAGGATCCG
ACCACCACTGTTTGTGGCTCAACACGTGCATCGGCCAGAGCACCTACCTT
TCCTGTGCCTGCACGCTTGTCAGCGCCTTGGCCGTCACAGCTCTGCTAGC
TGGCATGACCGTGCTGGGGCTTACGCATTGGGTCAATGATCCACAAAACA
CCCGCGAAGCCTTCCTTTTCCCACTGTCTGCCAATGTTTTACTTGGGTTT
GGTCGCAATTATTTTATTTGCTGGCTGTACTCTTAGGACAGCTCCTCCTC
TTCCACTTCTTTCTCCACTGTCACCAACTCACTACCTACCAATACGTCCT
CCT
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protein sequence of jgi.p|Nanoce1779_2|102806

>mRNA_7104-protein ID=mRNA_7104-protein|Name=jgi.p|Nanoce1779_2|102806|organism=Nannochloropsis oceanica|type=polypeptide|length=102bp
MCQANVQKGTAHCRICSKFTTGSDHHCLWLNTCIGQSTYLSCACTLVSAL
AVTALLAGMTVLGLTHWVNDPQNTREAFLFPLSANVLLGFGRNYFICWLY
S*
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mRNA from alignment at scaffold_16:300121..300723-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7104 ID=mRNA_7104|Name=jgi.p|Nanoce1779_2|102806|organism=Nannochloropsis oceanica|type=mRNA|length=603bp|location=Sequence derived from alignment at scaffold_16:300121..300723- (Nannochloropsis oceanica)
CTCGTCGTTGTCGTGCCAGCCTTCACCTCTTTTGCCTTGACTATCACCTG
CGCCACGCTCCTGCTCCTGACATTCAGTTCTGGCCTTGTAACCATGCTCG
TTGACCCATCAGATGCGTCGGTCTTGAATAAGGCAGTTTGACTCCGGATG
ACGATATTGAGAAGAGCACTAGTTCGAGCCACCCATACCAGCACCCGCAA
CAACATCAGCAAGGTAGCGTGTACTATGGCATGTGCCAAGCCAATGTACA
AAAAGGAACCGCACATTGTCGCATCTGCTCGAAATTTACCACAGGATCCG
ACCACCACTGTTTGTGGCTCAACACGTGCATCGGCCAGAGCACCTACCTT
TCCTGTGCCTGCACGCTTGTCAGCGCCTTGGCCGTCACAGCTCTGCTAGC
TGGCATGACCGTGCTGGGGCTTACGCATTGGGTCAATGATCCACAAAACA
CCCGCGAAGCCTTCCTTTTCCCACTGTCTGCCAATGTTTTACTTGGGTTT
GGTCGCAATTATTTTATTTGCTGGCTGTACTCTTAGGACAGCTCCTCCTC
TTCCACTTCTTTCTCCACTGTCACCAACTCACTACCTACCAATACGTCCT
CCT
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Coding sequence (CDS) from alignment at scaffold_16:300121..300723-

>mRNA_7104 ID=mRNA_7104|Name=jgi.p|Nanoce1779_2|102806|organism=Nannochloropsis oceanica|type=CDS|length=306bp|location=Sequence derived from alignment at scaffold_16:300121..300723- (Nannochloropsis oceanica)
ATGTGCCAAGCCAATGTACAAAAAGGAACCGCACATTGTCGCATCTGCTC
GAAATTTACCACAGGATCCGACCACCACTGTTTGTGGCTCAACACGTGCA
TCGGCCAGAGCACCTACCTTTCCTGTGCCTGCACGCTTGTCAGCGCCTTG
GCCGTCACAGCTCTGCTAGCTGGCATGACCGTGCTGGGGCTTACGCATTG
GGTCAATGATCCACAAAACACCCGCGAAGCCTTCCTTTTCCCACTGTCTG
CCAATGTTTTACTTGGGTTTGGTCGCAATTATTTTATTTGCTGGCTGTAC
TCTTAG
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Synonyms
Publications