jgi.p|Nanoce1779_2|595624, mRNA_7102 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595624
Unique NamemRNA_7102
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length475
Alignment locationscaffold_16:297688..298421 -

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Properties
Property NameValue
TranscriptId595710
TrackFilteredModels2
ProteinId595624
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:297688..298421 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595624gene_7102Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595624mRNA_7102-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7102CDS_7102Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7102 ID=mRNA_7102|Name=jgi.p|Nanoce1779_2|595624|organism=Nannochloropsis oceanica|type=mRNA|length=475bp
AGATCTAAACAAGCAAACCATGACGAGAGACAGACCAGGGACCGGCACAT
TTACGTACCAGGAGCAAGTTAAGACCATTACGAATGAGGTGATTGAGAAA
GTGCTGGGCTCGCACACCTTGTTCGACGGCGAGCGCGTGGGAGGTTGGTC
AGATCAGGTTGGGGCAAATGCCGCCGCCGCGCTCGTCGCACAGTGCGGTG
CCCAAGAAAGGACGTATCGTTTTGCAGTCACGACAACGATCGTCCAACGC
AACGGCACTGGGCTCAGCACCAGCAGTGCCGCAGTATGGGACAAAGCCAC
CGATTTCAACGTTACCGTCCTATGGGAGAACCAGGCGTTGACATGCGTAG
TCGTGGTTTTTGCGTTGGCTGTGTGAGAAAGGGCTTGCGAAATGGACCAC
AACTTGAAAAAAAATCAAAATTGAGAACGGAATTATTGGAGGGGTTATTT
TTGACATGCATGCTGCAAGAGATGT
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protein sequence of jgi.p|Nanoce1779_2|595624

>mRNA_7102-protein ID=mRNA_7102-protein|Name=jgi.p|Nanoce1779_2|595624|organism=Nannochloropsis oceanica|type=polypeptide|length=119bp
MTRDRPGTGTFTYQEQVKTITNEVIEKVLGSHTLFDGERVGGWSDQVGAN
AAAALVAQCGAQERTYRFAVTTTIVQRNGTGLSTSSAAVWDKATDFNVTV
LWENQALTCVVVVFALAV*
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mRNA from alignment at scaffold_16:297688..298421-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7102 ID=mRNA_7102|Name=jgi.p|Nanoce1779_2|595624|organism=Nannochloropsis oceanica|type=mRNA|length=734bp|location=Sequence derived from alignment at scaffold_16:297688..298421- (Nannochloropsis oceanica)
AGATCTAAACAAGCAAACCATGACGAGAGACAGACCAGGGACCGGCACAT
TTACGTACCAGGAGCAAGTTAAGACCATTACGAATGAGGTAAGCTCCTCT
CACACATACACGACGACCCCGCCAGCGCCCGCCACAGTCTTTTTTTGTGA
CCGACCCACATCTCCACATCCGGATACTACCCTGTCACCAAAGGTGATTG
AGAAAGTGCTGGGCTCGCACACCTTGTTCGACGGCGAGCGCGTGGGAGGT
TGGTCAGATCAGGTTGGGGCAAATGCCGCCGCCGCGCTCGTCGCACAGTG
CGGTGCCCAAGAAAGGACGTATCGTTTTGCAGGTTCGTCACACTGAATGG
GGGTCGCAGTGTAGCAATCAGGCGAATAATTGATAGAATCCTATCGTCCC
CTTGGTCTCCTGCACCCATAGCTTCAGGCGCCGTCTACTCATTCTCATTC
CATGCGCCCCCCTTCTTTTCACCCTTCAATATCCAGTCACGACAACGATC
GTCCAACGCAACGGCACTGGGCTCAGCACCAGCAGTGCCGCAGTATGGGA
CAAAGCCACCGATTTCAACGTTACCGTCCTATGGGAGAACCAGGCGTTGA
CATGCGTAGTCGTGGTTTTTGCGTTGGCTGTGTGAGAAAGGGCTTGCGAA
ATGGACCACAACTTGAAAAAAAATCAAAATTGAGAACGGAATTATTGGAG
GGGTTATTTTTGACATGCATGCTGCAAGAGATGT
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Coding sequence (CDS) from alignment at scaffold_16:297688..298421-

>mRNA_7102 ID=mRNA_7102|Name=jgi.p|Nanoce1779_2|595624|organism=Nannochloropsis oceanica|type=CDS|length=1071bp|location=Sequence derived from alignment at scaffold_16:297688..298421- (Nannochloropsis oceanica)
TCACGACAACGATCGTCCAACGCAACGGCACTGGGCTCAGCACCAGCAGT
GCCGCAGTATGGGACAAAGCCACCGATTTCAACGTTACCGTCCTATGGGA
GAACCAGGCGTTGACATGCGTAGTCGTGGTTTTTGCGTTGGCTGTGTGAG
TGATTGAGAAAGTGCTGGGCTCGCACACCTTGTTCGACGGCGAGCGCGTG
GGAGGTTGGTCAGATCAGGTTGGGGCAAATGCCGCCGCCGCGCTCGTCGC
ACAGTGCGGTGCCCAAGAAAGGACGTATCGTTTTGCAGATGACGAGAGAC
AGACCAGGGACCGGCACATTTACGTACCAGGAGCAAGTTAAGACCATTAC
GAATGAGTCACGACAACGATCGTCCAACGCAACGGCACTGGGCTCAGCAC
CAGCAGTGCCGCAGTATGGGACAAAGCCACCGATTTCAACGTTACCGTCC
TATGGGAGAACCAGGCGTTGACATGCGTAGTCGTGGTTTTTGCGTTGGCT
GTGTGAGTGATTGAGAAAGTGCTGGGCTCGCACACCTTGTTCGACGGCGA
GCGCGTGGGAGGTTGGTCAGATCAGGTTGGGGCAAATGCCGCCGCCGCGC
TCGTCGCACAGTGCGGTGCCCAAGAAAGGACGTATCGTTTTGCAGATGAC
GAGAGACAGACCAGGGACCGGCACATTTACGTACCAGGAGCAAGTTAAGA
CCATTACGAATGAGTCACGACAACGATCGTCCAACGCAACGGCACTGGGC
TCAGCACCAGCAGTGCCGCAGTATGGGACAAAGCCACCGATTTCAACGTT
ACCGTCCTATGGGAGAACCAGGCGTTGACATGCGTAGTCGTGGTTTTTGC
GTTGGCTGTGTGAGTGATTGAGAAAGTGCTGGGCTCGCACACCTTGTTCG
ACGGCGAGCGCGTGGGAGGTTGGTCAGATCAGGTTGGGGCAAATGCCGCC
GCCGCGCTCGTCGCACAGTGCGGTGCCCAAGAAAGGACGTATCGTTTTGC
AGATGACGAGAGACAGACCAGGGACCGGCACATTTACGTACCAGGAGCAA
GTTAAGACCATTACGAATGAG
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Synonyms
Publications