jgi.p|Nanoce1779_2|102763, mRNA_7101 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|102763
Unique NamemRNA_7101
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1258
Alignment locationscaffold_16:295578..297040 -

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Properties
Property NameValue
TranscriptId102849
TrackFilteredModels2
ProteinId102763
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:295578..297040 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|102763gene_7101Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|102763mRNA_7101-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7101CDS_7101Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7101 ID=mRNA_7101|Name=jgi.p|Nanoce1779_2|102763|organism=Nannochloropsis oceanica|type=mRNA|length=1258bp
CTCGCCTAGCACAACATAAGGACATCCTTCGTAAAAGGCGACAATAGCAC
CAACCACACAACGGCAGCAGCAGCCACAATAGCATTAGCAGCAGCAGTAG
CAGCAGCAGCAACATCAATAGCACCATAGAGACGAAGTGTCATCTTCACA
CTATGGGTTCCCAGCACCGAAAAAGTAGGCGGCCACGAACACATGTCATA
CGGCTACTCACGCGTCGTTGTGAGCGTGGGACAAGCTTTCCCAACACGCA
CGCCCTCGAGGCTTGGGCGGAAAAACGAAGCATCCTTCTAGCCCATCCAC
ACTATACCCCCCTTCCGCGCTATACCAAATCCACCATCGCCACCTGCTTC
TCACCCGACGGCCACACCTTTGCCTCCACCCACGGTGACCACACTGTAAA
ACTCATATGCTTCCAGACCAACCGCGTCCTCCACACGCTCACCGGACACC
CCCGCACGCCTTGGACCGTCAAATATCACCCATGTAACCCTCACCTCCTC
GCCTCAGGCTGTATTGGTGGACAAGTCCGAATCTGGGACACATTAGCTGG
CCGCTGTCTGTACCGCGCCTCGCTCGACCTCCCCATCATCTCCCTTTCCT
TTCATCCCTCCCCCCTTCCGGGAACCCACCTTCTCGCTATCGCTACATTT
CATGCCATCTGGCTCTGGCCTTATGAGACGTGTGCGAAACCATACAATGA
GTGGCAGACAGAACGGTTGCTTCGGTGTGTCTGTTTCCCTCCACCCGACG
GCCGACACATCTTGATAGGGCTAGGGAACGCGACCAGGACTCCGCCGCCA
CAGCTGCTCCAGCAACAGCAGCAGCAACAGCAACAACATAATCAGTACCT
CCAGCACAATCAGCACACTCAGCCACAGCAGCCGCAGCAGAAGACCTTCC
ATCTGTTCATATGGGATTTCGATGTACAAAAAGCAATGACACCAAGGAAT
AAACGTCCTCCAATGGCCCCAGCGCGGCAACGACGAAGGCGCGTCCAAGA
AGAGACGGGCAAGAGGGAGGAGGAAGAGAAGGTGGACGAGGACGCAGCCG
AGTTACGAGCACTTCTGCTCCTCCTCCTCCTCCCCCCGCCGCAGGCCCAC
GTGTGCAATATTACTCGTCTCCCCTCAGTCGTCCTCGGCCACTAATCGAA
AATGCCTTGCTGTACAATGACGGTGGCTTTGATATTTCAGGGTGTGGAAG
GATCTTGGTGACTTGTGCCGAGTTCCACCCGCGGGATTCGGTGTTGGGGC
CAGGGAGG
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protein sequence of jgi.p|Nanoce1779_2|102763

>mRNA_7101-protein ID=mRNA_7101-protein|Name=jgi.p|Nanoce1779_2|102763|organism=Nannochloropsis oceanica|type=polypeptide|length=331bp
MGSQHRKSRRPRTHVIRLLTRRCERGTSFPNTHALEAWAEKRSILLAHPH
YTPLPRYTKSTIATCFSPDGHTFASTHGDHTVKLICFQTNRVLHTLTGHP
RTPWTVKYHPCNPHLLASGCIGGQVRIWDTLAGRCLYRASLDLPIISLSF
HPSPLPGTHLLAIATFHAIWLWPYETCAKPYNEWQTERLLRCVCFPPPDG
RHILIGLGNATRTPPPQLLQQQQQQQQQHNQYLQHNQHTQPQQPQQKTFH
LFIWDFDVQKAMTPRNKRPPMAPARQRRRRVQEETGKREEEEKVDEDAAE
LRALLLLLLLPPPQAHVCNITRLPSVVLGH*
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mRNA from alignment at scaffold_16:295578..297040-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7101 ID=mRNA_7101|Name=jgi.p|Nanoce1779_2|102763|organism=Nannochloropsis oceanica|type=mRNA|length=1463bp|location=Sequence derived from alignment at scaffold_16:295578..297040- (Nannochloropsis oceanica)
CTCGCCTAGCACAACATAAGGACATCCTTCGTAAAAGGCGACAATAGCAC
CAACCACACAACGGCAGCAGCAGCCACAATAGCATTAGCAGCAGCAGTAG
CAGCAGCAGCAACATCAATAGCACCATAGAGACGAAGTGTCATCTTCACA
CTATGGGTTCCCAGCACCGAAAAAGTAGGCGGCCACGAACACATGTCATA
CGGCTACTCACGCGTCGTTGTGAGCGTGGGACAAGCTTTCCCAACACGGT
AGGTTGTAGATAATGGTCGTTCGTCAATCAACCCATGTCACAATTCAATT
ATTATCCCTACCCCATACCGACTCCTCATCCTCCTCTTACCTTACCGCCC
CTCCTATCCTACCCCACCTCCTTCACTCGCGAACAAAAGCACGCCCTCGA
GGCTTGGGCGGAAAAACGAAGCATCCTTCTAGCCCATCCACACTATACCC
CCCTTCCGCGCTATACCAAATCCACCATCGCCACCTGCTTCTCACCCGAC
GGCCACACCTTTGCCTCCACCCACGGTGACCACACTGTAAAACTCATATG
CTTCCAGACCAACCGCGTCCTCCACACGCTCACCGGACACCCCCGCACGC
CTTGGACCGTCAAATATCACCCATGTAACCCTCACCTCCTCGCCTCAGGC
TGTATTGGTGGACAAGTCCGAATCTGGGACACATTAGCTGGCCGCTGTCT
GTACCGCGCCTCGCTCGACCTCCCCATCATCTCCCTTTCCTTTCATCCCT
CCCCCCTTCCGGGAACCCACCTTCTCGCTATCGCTACATTTCATGCCATC
TGGCTCTGGCCTTATGAGACGTGTGCGAAACCATACAATGAGTGGCAGAC
AGAACGGTTGCTTCGGTGTGTCTGTTTCCCTCCACCCGACGGCCGACACA
TCTTGATAGGGCTAGGGAACGCGACCAGGACTCCGCCGCCACAGCTGCTC
CAGCAACAGCAGCAGCAACAGCAACAACATAATCAGTACCTCCAGCACAA
TCAGCACACTCAGCCACAGCAGCCGCAGCAGAAGACCTTCCATCTGTTCA
TATGGGATTTCGATGTACAAAAAGCAATGACACCAAGGAATAAACGTCCT
CCAATGGCCCCAGCGCGGCAACGACGAAGGCGCGTCCAAGAAGCAGACGA
AGAGGAAGATGATCATGATGAAGGAGGGGGGAGAGAAGGAGGAGAAGGAG
GAGGAGGAGACGGGCAAGAGGGAGGAGGAAGAGAAGGTGGACGAGGACGC
AGCCGAGTTACGAGCACTTCTGCTCCTCCTCCTCCTCCCCCCGCCGCAGG
CCCACGTGTGCAATATTACTCGTCTCCCCTCAGTCGTCCTCGGCCACTAA
TCGAAAATGCCTTGCTGTACAATGACGGTGGCTTTGATATTTCAGGGTGT
GGAAGGATCTTGGTGACTTGTGCCGAGTTCCACCCGCGGGATTCGGTGTT
GGGGCCAGGGAGG
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Coding sequence (CDS) from alignment at scaffold_16:295578..297040-

>mRNA_7101 ID=mRNA_7101|Name=jgi.p|Nanoce1779_2|102763|organism=Nannochloropsis oceanica|type=CDS|length=2979bp|location=Sequence derived from alignment at scaffold_16:295578..297040- (Nannochloropsis oceanica)
GAGACGGGCAAGAGGGAGGAGGAAGAGAAGGTGGACGAGGACGCAGCCGA
GTTACGAGCACTTCTGCTCCTCCTCCTCCTCCCCCCGCCGCAGGCCCACG
TGTGCAATATTACTCGTCTCCCCTCAGTCGTCCTCGGCCACTAACACGCC
CTCGAGGCTTGGGCGGAAAAACGAAGCATCCTTCTAGCCCATCCACACTA
TACCCCCCTTCCGCGCTATACCAAATCCACCATCGCCACCTGCTTCTCAC
CCGACGGCCACACCTTTGCCTCCACCCACGGTGACCACACTGTAAAACTC
ATATGCTTCCAGACCAACCGCGTCCTCCACACGCTCACCGGACACCCCCG
CACGCCTTGGACCGTCAAATATCACCCATGTAACCCTCACCTCCTCGCCT
CAGGCTGTATTGGTGGACAAGTCCGAATCTGGGACACATTAGCTGGCCGC
TGTCTGTACCGCGCCTCGCTCGACCTCCCCATCATCTCCCTTTCCTTTCA
TCCCTCCCCCCTTCCGGGAACCCACCTTCTCGCTATCGCTACATTTCATG
CCATCTGGCTCTGGCCTTATGAGACGTGTGCGAAACCATACAATGAGTGG
CAGACAGAACGGTTGCTTCGGTGTGTCTGTTTCCCTCCACCCGACGGCCG
ACACATCTTGATAGGGCTAGGGAACGCGACCAGGACTCCGCCGCCACAGC
TGCTCCAGCAACAGCAGCAGCAACAGCAACAACATAATCAGTACCTCCAG
CACAATCAGCACACTCAGCCACAGCAGCCGCAGCAGAAGACCTTCCATCT
GTTCATATGGGATTTCGATGTACAAAAAGCAATGACACCAAGGAATAAAC
GTCCTCCAATGGCCCCAGCGCGGCAACGACGAAGGCGCGTCCAAGAAATG
GGTTCCCAGCACCGAAAAAGTAGGCGGCCACGAACACATGTCATACGGCT
ACTCACGCGTCGTTGTGAGCGTGGGACAAGCTTTCCCAACACGGAGACGG
GCAAGAGGGAGGAGGAAGAGAAGGTGGACGAGGACGCAGCCGAGTTACGA
GCACTTCTGCTCCTCCTCCTCCTCCCCCCGCCGCAGGCCCACGTGTGCAA
TATTACTCGTCTCCCCTCAGTCGTCCTCGGCCACTAACACGCCCTCGAGG
CTTGGGCGGAAAAACGAAGCATCCTTCTAGCCCATCCACACTATACCCCC
CTTCCGCGCTATACCAAATCCACCATCGCCACCTGCTTCTCACCCGACGG
CCACACCTTTGCCTCCACCCACGGTGACCACACTGTAAAACTCATATGCT
TCCAGACCAACCGCGTCCTCCACACGCTCACCGGACACCCCCGCACGCCT
TGGACCGTCAAATATCACCCATGTAACCCTCACCTCCTCGCCTCAGGCTG
TATTGGTGGACAAGTCCGAATCTGGGACACATTAGCTGGCCGCTGTCTGT
ACCGCGCCTCGCTCGACCTCCCCATCATCTCCCTTTCCTTTCATCCCTCC
CCCCTTCCGGGAACCCACCTTCTCGCTATCGCTACATTTCATGCCATCTG
GCTCTGGCCTTATGAGACGTGTGCGAAACCATACAATGAGTGGCAGACAG
AACGGTTGCTTCGGTGTGTCTGTTTCCCTCCACCCGACGGCCGACACATC
TTGATAGGGCTAGGGAACGCGACCAGGACTCCGCCGCCACAGCTGCTCCA
GCAACAGCAGCAGCAACAGCAACAACATAATCAGTACCTCCAGCACAATC
AGCACACTCAGCCACAGCAGCCGCAGCAGAAGACCTTCCATCTGTTCATA
TGGGATTTCGATGTACAAAAAGCAATGACACCAAGGAATAAACGTCCTCC
AATGGCCCCAGCGCGGCAACGACGAAGGCGCGTCCAAGAAATGGGTTCCC
AGCACCGAAAAAGTAGGCGGCCACGAACACATGTCATACGGCTACTCACG
CGTCGTTGTGAGCGTGGGACAAGCTTTCCCAACACGGAGACGGGCAAGAG
GGAGGAGGAAGAGAAGGTGGACGAGGACGCAGCCGAGTTACGAGCACTTC
TGCTCCTCCTCCTCCTCCCCCCGCCGCAGGCCCACGTGTGCAATATTACT
CGTCTCCCCTCAGTCGTCCTCGGCCACTAACACGCCCTCGAGGCTTGGGC
GGAAAAACGAAGCATCCTTCTAGCCCATCCACACTATACCCCCCTTCCGC
GCTATACCAAATCCACCATCGCCACCTGCTTCTCACCCGACGGCCACACC
TTTGCCTCCACCCACGGTGACCACACTGTAAAACTCATATGCTTCCAGAC
CAACCGCGTCCTCCACACGCTCACCGGACACCCCCGCACGCCTTGGACCG
TCAAATATCACCCATGTAACCCTCACCTCCTCGCCTCAGGCTGTATTGGT
GGACAAGTCCGAATCTGGGACACATTAGCTGGCCGCTGTCTGTACCGCGC
CTCGCTCGACCTCCCCATCATCTCCCTTTCCTTTCATCCCTCCCCCCTTC
CGGGAACCCACCTTCTCGCTATCGCTACATTTCATGCCATCTGGCTCTGG
CCTTATGAGACGTGTGCGAAACCATACAATGAGTGGCAGACAGAACGGTT
GCTTCGGTGTGTCTGTTTCCCTCCACCCGACGGCCGACACATCTTGATAG
GGCTAGGGAACGCGACCAGGACTCCGCCGCCACAGCTGCTCCAGCAACAG
CAGCAGCAACAGCAACAACATAATCAGTACCTCCAGCACAATCAGCACAC
TCAGCCACAGCAGCCGCAGCAGAAGACCTTCCATCTGTTCATATGGGATT
TCGATGTACAAAAAGCAATGACACCAAGGAATAAACGTCCTCCAATGGCC
CCAGCGCGGCAACGACGAAGGCGCGTCCAAGAAATGGGTTCCCAGCACCG
AAAAAGTAGGCGGCCACGAACACATGTCATACGGCTACTCACGCGTCGTT
GTGAGCGTGGGACAAGCTTTCCCAACACG
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Synonyms
Publications