jgi.p|Nanoce1779_2|567244, mRNA_7100 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|567244
Unique NamemRNA_7100
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length603
Alignment locationscaffold_16:294645..295247 -

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Properties
Property NameValue
TranscriptId567330
TrackFilteredModels2
ProteinId567244
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:294645..295247 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|567244gene_7100Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7100CDS_7100Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|567244mRNA_7100-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7100 ID=mRNA_7100|Name=jgi.p|Nanoce1779_2|567244|organism=Nannochloropsis oceanica|type=mRNA|length=603bp
ATGGGTGGTGAGGAGAGCGATGGTGGGGGAATTGCGGCAGACCCAAAGAA
CAAGAAAGAAGACCAGAAAATGGACGGGAAGCAGCAGGAAGAGGACGGAG
AGAAGAAAGGAAAGGAGGTGCAGGAGGAAGAGGAGGAGTGGGAGGACGAG
GAGGAGGCGGGAAAGGAAGGGTATCAATATCACGGCCCTCGCCATAGATA
CTTGGCTCCTATTCTATCGGCGCGACCATTACATGGTGTAGCAATGGGAG
GAGTGACTTCGGTCAAGCTCTCGGCGACTGGCTCCATGGTGTTGCTAGGC
TATGGGGGGGTAAGGGTCTCCAGGGAAGTAGGGAGGGAGGGAGAGCGGGA
GGGATACCATGTTGTGGCGGAAGTGTATGAGACGGGGAGGATGGTAAGGG
TGCGATCGTTGAGGAGTGGGGGTGGGGAGGAAGGGAGGGAGAGAAGGGTA
GAAGAGGAGGAAGATGTGAATATCGCGAGGTTCCATCCAAGCGCGGGCCA
TGGGTTTGTGTACGGGACGAAGCAAGGGAGAATCTGTGTTTATGGGCCAA
AGAGGGGCCCGTTCGGTGTGGAGCGGGGGGGGGGTAGGAGAAGGAGGAGA
TAG
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protein sequence of jgi.p|Nanoce1779_2|567244

>mRNA_7100-protein ID=mRNA_7100-protein|Name=jgi.p|Nanoce1779_2|567244|organism=Nannochloropsis oceanica|type=polypeptide|length=201bp
MGGEESDGGGIAADPKNKKEDQKMDGKQQEEDGEKKGKEVQEEEEEWEDE
EEAGKEGYQYHGPRHRYLAPILSARPLHGVAMGGVTSVKLSATGSMVLLG
YGGVRVSREVGREGEREGYHVVAEVYETGRMVRVRSLRSGGGEEGRERRV
EEEEDVNIARFHPSAGHGFVYGTKQGRICVYGPKRGPFGVERGGGRRRRR
*
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mRNA from alignment at scaffold_16:294645..295247-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7100 ID=mRNA_7100|Name=jgi.p|Nanoce1779_2|567244|organism=Nannochloropsis oceanica|type=mRNA|length=603bp|location=Sequence derived from alignment at scaffold_16:294645..295247- (Nannochloropsis oceanica)
ATGGGTGGTGAGGAGAGCGATGGTGGGGGAATTGCGGCAGACCCAAAGAA
CAAGAAAGAAGACCAGAAAATGGACGGGAAGCAGCAGGAAGAGGACGGAG
AGAAGAAAGGAAAGGAGGTGCAGGAGGAAGAGGAGGAGTGGGAGGACGAG
GAGGAGGCGGGAAAGGAAGGGTATCAATATCACGGCCCTCGCCATAGATA
CTTGGCTCCTATTCTATCGGCGCGACCATTACATGGTGTAGCAATGGGAG
GAGTGACTTCGGTCAAGCTCTCGGCGACTGGCTCCATGGTGTTGCTAGGC
TATGGGGGGGTAAGGGTCTCCAGGGAAGTAGGGAGGGAGGGAGAGCGGGA
GGGATACCATGTTGTGGCGGAAGTGTATGAGACGGGGAGGATGGTAAGGG
TGCGATCGTTGAGGAGTGGGGGTGGGGAGGAAGGGAGGGAGAGAAGGGTA
GAAGAGGAGGAAGATGTGAATATCGCGAGGTTCCATCCAAGCGCGGGCCA
TGGGTTTGTGTACGGGACGAAGCAAGGGAGAATCTGTGTTTATGGGCCAA
AGAGGGGCCCGTTCGGTGTGGAGCGGGGGGGGGGTAGGAGAAGGAGGAGA
TAG
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Coding sequence (CDS) from alignment at scaffold_16:294645..295247-

>mRNA_7100 ID=mRNA_7100|Name=jgi.p|Nanoce1779_2|567244|organism=Nannochloropsis oceanica|type=CDS|length=603bp|location=Sequence derived from alignment at scaffold_16:294645..295247- (Nannochloropsis oceanica)
ATGGGTGGTGAGGAGAGCGATGGTGGGGGAATTGCGGCAGACCCAAAGAA
CAAGAAAGAAGACCAGAAAATGGACGGGAAGCAGCAGGAAGAGGACGGAG
AGAAGAAAGGAAAGGAGGTGCAGGAGGAAGAGGAGGAGTGGGAGGACGAG
GAGGAGGCGGGAAAGGAAGGGTATCAATATCACGGCCCTCGCCATAGATA
CTTGGCTCCTATTCTATCGGCGCGACCATTACATGGTGTAGCAATGGGAG
GAGTGACTTCGGTCAAGCTCTCGGCGACTGGCTCCATGGTGTTGCTAGGC
TATGGGGGGGTAAGGGTCTCCAGGGAAGTAGGGAGGGAGGGAGAGCGGGA
GGGATACCATGTTGTGGCGGAAGTGTATGAGACGGGGAGGATGGTAAGGG
TGCGATCGTTGAGGAGTGGGGGTGGGGAGGAAGGGAGGGAGAGAAGGGTA
GAAGAGGAGGAAGATGTGAATATCGCGAGGTTCCATCCAAGCGCGGGCCA
TGGGTTTGTGTACGGGACGAAGCAAGGGAGAATCTGTGTTTATGGGCCAA
AGAGGGGCCCGTTCGGTGTGGAGCGGGGGGGGGGTAGGAGAAGGAGGAGA
TAG
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Synonyms
Publications