jgi.p|Nanoce1779_2|576113, mRNA_71 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576113
Unique Name	mRNA_71
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1365
Alignment location	scaffold_3:191075..196222 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	576199
Track	FilteredModels2
ProteinId	576113

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:191075..196222 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576113	gene_71	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576113	mRNA_71-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_71	CDS_71	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:191075..196222+
coding sequence from alignment at scaffold_3:191075..196222+

mRNA sequence

>mRNA_71 ID=mRNA_71|Name=jgi.p|Nanoce1779_2|576113|organism=Nannochloropsis oceanica|type=mRNA|length=1365bp
ACAGGGCGTCTCGACCCCCACCATCATCATGCCCGCGAAAGTTGCTGTGG
TCAAGGCCACGGAACTGATACCCAAGGCGTTCAATGGCACGGTTGCAGTC
CCCGAGGAGAAGTCTGATGATCTGTTGTACGACCTGCATCACTTGGCGGC
CGTCGATTCCCATCCAGTCGACCTCGAAAATTTTCAAGCCAATCCGGAAA
AGTACCTGTTGGAAAGTGCCACCTTTGGCCTTCAAGGCATCATCGACCGC
CTCTTTGAATTGCCTTATGAGTCTTCCAACACTGGCCCCGTCGTGGCCTT
ACCTGCAGCCACCACCTATCTTCCCCGCGCTCAACGCCTTCCTGAGGCAA
AGAAGGAAACTCGATGGGAGAAATTCGCCAGGGAGAAGGGGATCACGAAC
AAAAAGCGGGCACGAATGCTGTGGGATGAAGAGGCGCAGGAGTGGCGACC
TCGATGGGGATATAATCGAGCAAAGGGTGGAGTGATGGATCAAGCGATTG
TAGAAGTCATGCCTGGGGATGATCCGCTTGTGGATCCCTGGACGGAGGCA
AGGAATAGCAAGAGGGCACGGGTGGAAAAGAACTTGATGCAGCAGGCTAA
GAACAGGGGACTGGTAGGCGTGGGGACGTTGGCGCCGGGGGCGAAGGCAG
GAGGGAGAAAGGGGAAGAAGGAAAGGTTGGCAGCGAAGGGACCGGCGTAT
GGGTTGCCTGTGGATTTGATGCCCACGAAGAAGCACGAGAAGGCACCTGC
TGGTACTGCTGCTGCTGCTGCTTCTGCGGAGGGCACAAAGGCAGTTCCAA
AGAAGAAGGGAAAGGCCGCAGGTTTGAAAGCGTTGGAGGTGGCGCAACAC
TCGACGGCATCACTGGGAAAGTTTGACGCGAAGCTGGTGGGGGAGCCAGA
GAAGAAGGTGAAGAAGGTCAGAAAGGTTGCGTCAGTTGCGGATAGCAAGG
CCTTGCTTCACGAATCGAAAAAGATGAATTCGATTTTGACTTCGGTATTG
CGGCCGAAAGGTGGGAGTGGGGGCAGTGGGAAGACAGCCCATGTGAATAT
TGATGCGTTGGAGCCGGAGAGGGCGGGGTATGCGAGGAAGAAGGGGCGGG
GGGCGGTAAAAGGTGGTGGAAAGAAGAAGAAGTAAGGTGCTGGCATGGAA
TGTGCTGCTGGGAGGGGGCTGATATGGGGAAAGAGGAAAAACGGACAATA
TCTCAAGGGAACGATGAACAAGAGTGATGCGACGAAGGGGAGAGGGGGAA
AGATGAAAAGAGAATTTTGTGTTTTCCGCACACACGTTAGAAAGCCAAAT
TAAGTAATAGGAGAAATGATATTGTTTGCAAAGTCAAAGAACCAATAGGA
AAGTAAGAGGGAGAA

protein sequence of jgi.p|Nanoce1779_2|576113

>mRNA_71-protein ID=mRNA_71-protein|Name=jgi.p|Nanoce1779_2|576113|organism=Nannochloropsis oceanica|type=polypeptide|length=369bp
MPAKVAVVKATELIPKAFNGTVAVPEEKSDDLLYDLHHLAAVDSHPVDLE
NFQANPEKYLLESATFGLQGIIDRLFELPYESSNTGPVVALPAATTYLPR
AQRLPEAKKETRWEKFAREKGITNKKRARMLWDEEAQEWRPRWGYNRAKG
GVMDQAIVEVMPGDDPLVDPWTEARNSKRARVEKNLMQQAKNRGLVGVGT
LAPGAKAGGRKGKKERLAAKGPAYGLPVDLMPTKKHEKAPAGTAAAAASA
EGTKAVPKKKGKAAGLKALEVAQHSTASLGKFDAKLVGEPEKKVKKVRKV
ASVADSKALLHESKKMNSILTSVLRPKGGSGGSGKTAHVNIDALEPERAG
YARKKGRGAVKGGGKKKK*

mRNA from alignment at scaffold_3:191075..196222+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_71 ID=mRNA_71|Name=jgi.p|Nanoce1779_2|576113|organism=Nannochloropsis oceanica|type=mRNA|length=5148bp|location=Sequence derived from alignment at scaffold_3:191075..196222+ (Nannochloropsis oceanica)
ACAGGGCGTCTCGACCCCCACCATCATCATGCCCGCGAAAGTTGCTGTGG
TCAAGGCCACGGAACTGATACCCAAGGCGTTCAATGGCACGGTTGCAGTC
CCCGAGGAGAAGTCTGATGATCTGTTGTACGACCTGCATCACTTGGCGGC
CGTCGATTCCCATCCAGTAAGCTCTTGTGTGAGGTGTGCGTGTGTGCTTG
CGGTCCCTGTTACAGGAGAGAGAGAGAGAGGAGAGAAGCGGAGGGAGAGA
GAGGAGAGGAGGAGAGAGAGGAGAGAGAGGAGAGAGGAGGAGGAGAGAGA
GAGAGAGAGAGAGAGAGAAGAGAGAGAGAGGAGAGAGAGAGACGCGAAAG
CAAAGCAAGAACCTCATGCATCCTTCAGTCCAACTCGAGATCCTCATGCA
TCCTTCAGTCCAACTCGAGATCCTTCAGTCCAACTCGAGATATGTCTTAC
AGAGTCTTACTGAGAGATAAAAAGAGCTAACCCGAAAATATCTTAACATT
CACAAAATAAAAAAATAAAACTTTTCTTTGCCTTTTCTTTTCCCTCTATT
GACTATCTGGACTTCTTTAGTGTGAGTTTATTCTGATATCGTATGCCTTG
ATTTCTTTTTTATGCCTCTTTCTCTTTCCTCTTTCCTTTATCTCCCCTCC
TCTAAAACATCTATTCCTCTCTTTCCTCTTTCCTTATCTCCCCTCCTCTA
AAACATATCGAACGGATTCCCACTTGCCGGTGGAGGAGGGGGAGGAAAAG
GAGCAGCACCAGGAGGAACGGCAGAAGCCAAAAACGGATTGTGCTGCTGC
GGCTGCAATTGTTGTTGCAGGTGTGATCCCGACGCCGGCACCGCCGCTTG
CTGTTTCTCCCAAGGCGGCGGCTGCTGCTGCTGCTGCTGCTGCGTGGCGG
GAGTGGCAGTTGCGCGAGGAGGAGCGGGGGCAGGAGGAAGAGGAGCATAA
ATTTTGGAAACATGGTGGAAATCCGTCTGTCGCTCTGAGCCGTTGGCGAG
TGTGATAGTGTAGTAAGGAGGGTAATCATCCATGTGGACTTCTTTGATTA
CCGTCCGGGTTTTTTTGCCTTGGGAGTCCGTGTAAATCACAGCTTCACCC
GTCTGGAAGGTAGGAAGGGAGGGGGCGATGGGGGGCTGGGGATGGGCGGA
GGTGTGTGTGGGGGGGAAAGGTAGGGTGGTAGTGCCGCTGGTGGATATGT
CCAGGTTCCCAAAGGCATCTTCGATGGAGAGGGTTTGGATGGGGGAACGG
GAGGGAGGGGGGGAGGGAGGGGTGAAGCGGACCATGCCGGGAGGGAGTTT
AGGGGGGTAAGAGGAGGGGAAGGATCGCGGGGGGGTAGGCTGTTGTTGCT
GCTGCTGTGGGAACGGAGGCTGCTGCTGTCCTTGTTGTTGCTGCTGGTGC
TGCTGTTGCCGGGGCCAGCCGCCAGCATAGGCTGGTTGTTGTTGTTGCTG
CTGCTGTTGGGGAGGAGGAGGCGGGGCCGGCGGGGGGGCAGTGACGGAGG
GGTAGCCTTGAAATCCTTCCCCTCCTTGCTGAGGGAGGGTTAAAGGTGCC
GGGGGAGGAGTAGGGATGTCACCGTAAACCGGCTGCGGCTGCCTCTGCTG
CTGGTACTGCTGCTGCTGCTGCTGCGGAGGCGGAGGAGGTGGGGAAGGGT
AAAAGGTGGAAGGTTGCGGCTGGGGAGGAGAGGGAAATTGAGGGGCAGAA
AAGAAGTCGGCGCCAAATTGCGATGAAGAGGAGGAGGGGTGCTGTTGGAG
GTGGGGAGGGAGGGGAGGCTGCTGCGGCGGGGGTGGTGTATTGTTGAAGC
TGATGGCGGATTGTCCCCCCCCTGTACTCCCCGCCCATCCTGAAGAGCTT
GCAAAGGGATCAGACGCAAAAGCCCCTGTTGTCTCCTCCTTCTTCTGCTG
CGGCTGCTGCTTGCGTTCTGGCGAGCCAGGCGCAAACACCAAATCCAACA
AGTCCATCCCCTGCTGCTGCTTCCTTCTACTCCGACCCAGCCCCCCCTCC
CTCCCTTCCTCTACTTCTCGATCATCTGGGTGACTGGTCGATGCTCCTCC
TGTTCCTTTTTCTCCTCCCGTCGCCCTTGTCGACGACAAGGAAGAGGACG
CAGATTGCTGCCTCCGACTCAACGACGTCGGGTGTGGGTCATACATCTCC
TCCCTCCCTCCCTCTCTCCCTCCTCCTCCCCCCCCCACCCTCCCCACTCC
ACCCCCGAAGCTGCCACCTAAGCTCGTCCTCCCCCTTCCGTCCCCGCCCT
TTCCTCCTCCGGGATGGTAGGTACTATGAGCATGCCACCTTTTCTCAATG
TACTTCTGCCTGATCCAGTCACGGATTCGTTGTTCTTGCCCTGCTTCCGG
CTCTGCATAATCTCTCGGGTCCCAATGGGCAAGATAGAGAGCGGCGCAAG
CTTCGTTTCCTCCGTCTTTTAAGGCCTTGACCTCATCGAGGGTGAAGGTG
GAGAGGGAGATACTCTTAACACGGTGAGAGAACTCGCGATGAATGCCCGA
GCACGCTGTAGGTGAAGATAGGGAGGGGTGAATGGGGAGATGAACCGCAA
GGGCGGATGCAACTGCCTTAGAGGCCATTTCTGCGCGCGCGCACGCAAAC
AAAATAATAAGAAGGCACGCCTTATCCCAAGTAAGCAAGCGTACATGACG
AAGGCACCAGCGGAGCGCAAGTGAATACGCAGCCATCGCGCCCACCCACA
TCCCAAACTACCGCCCATCCCCGAAATCCTGTACCTGTGCAAATGAAGGT
GCTGAACGTGAGGTTTACGTACTGCGGCAGCTTCTCTGTGCAGTCTGCGC
AGCGCTTATTGGGAGGGAGTTTGCTCAAGTCCTTAACAGCCTTGATGAGG
CGCTCCTCCTTTCGCTTGTCCAACCCCGCCATCCCGCCTGCTGAAGAAGA
GTGAGTGGAAATTTTCCTTGTTAATGTCGTGTGTGTGTACACAATGAGGC
TTTTTGCTGATACTCCTGTACTGGGATCACGTGTCTAAAGGCAAGGGAAT
TGAGATGTGCCGTTGAGAAGGAAATGACGATGGCGCGTACATACGGAATT
GTGTGACCAAAACCACGGTGGCCAGAGCCAGAAAGCATGCCACAAGCACC
AAACATGACAGATCAACGCGTGTTGGCTGTGCATAGGTGTAATGCGGAGC
ATGGTCGGTGATGTTCAGGGTCGGCATGCAAGACTCGCGGGCCTCCGAAT
TTCGAAGGGGAAGGCAACGTTCGCTTATGCCCCCCTCGCGCCAAATCCCC
ATTTCTCATGTGGGCCAGTCATTGAAAAGTCCCACAGACTGCATTGCCGT
GATGCTTTGTTCTATGCTCCCGCTTTTCTTTCACGCCGAAGACAAGACAG
TAGGACAGCAACATTACCATCAAGGGACGGTCTGCTTTCACCGTTGCTAA
CCTCGTCCAAACCCGGATCCCACCACCCCATCGAACAAACACACAGGGCG
TCTCGACCCCCACCATCATCATGCCCGCGAAAGTTGCTGTGGTCAAGGCC
ACGGAACTGATACCCAAGGCGTTCAATGGCACGGTTGCAGTCCCCGAGGA
GAAGTCTGATGATCTGTTGTACGACCTGCATCACTTGGCGGCCGTCGATT
CCCATCCAGTAAGCTCTTGTGTGAGGTGTGCGTGTGTGCTTGCGGTCCCT
GTTACCAAGATACTGCCCAACTTACCCTCCACCCCCTTGATAGTTTTTTA
CGCGAGAATTCACGGCATGTTCGCAGGCTTTCAAGAAAAAGGAGGGGGGC
TGTACTCGAACAATTTGTCTTGTCCCTGTGACAGTCTTAACCCCGCTGAA
AACATCCAACCTCACTCCTCTCGCTCCCTCATTCAATCTCCGTCGCCATC
CCAGAGGATAACTTGCTGGAAAACGTCCCCACCAGGGAGGCACGTTGTTC
CACTTCATAACCTGACATCTCTTTCACTCCCTGCCTTCTTTCTGCTTAGG
TCGACCTCGAAAATTTTCAAGCCAATCCGGAAAAGTACCTGTTGGAAAGT
GCCACCTTTGGCCTTCAAGGCATCATCGACCGCCTCTTTGAATTGCCTTA
TGAGTCTTCCAACACTGGCCCCGTCGTGGCCTTACCTGCAGCCACCACCT
ATCTTCCCCGCGCTCAACGCCTTCCTGAGGCAAAGAAGGAAACTCGATGG
GAGAAATTCGCCAGGGAGAAGGGGATCACGAACAAAAAGCGGGCACGAAT
GCTGTGGGATGAAGAGGCGCAGGAGTGGCGACCTCGATGGGGATATAATC
GAGCAAAGGGTGGAGTGATGGATCAAGCGATTGTAGAAGTCATGCCTGGG
GATGATCCGCTTGTGGATCCCTGGACGGAGGCAAGGAATAGCAAGAGGGC
ACGGGTGGAAAAGAACTTGATGCAGCAGGCTAAGAACAGGGGACTGGTAG
GCGTGGGGACGTTGGCGCCGGGGGCGAAGGCAGGAGGGAGAAAGGGGAAG
AAGGAAAGGTTGGCAGCGAAGGGACCGGCGTATGGGTTGCCTGTGGATTT
GATGCCCACGAAGAAGCACGAGAAGGCACCTGCTGGTACTGCTGCTGCTG
CTGCTTCTGCGGAGGGCACAAAGGCAGTTCCAAAGAAGAAGGGAAAGGCC
GCAGGTTTGAAAGCGTTGGAGGTGGCGCAACACTCGACGGCATCACTGGG
AAAGTTTGACGCGAAGCTGGTGGGGGAGCCAGAGAAGAAGGTGAAGAAGG
TCAGAAAGGTTGCGTCAGTTGCGGATAGCAAGGCCTTGCTTCACGAATCG
AAAAAGATGAATTCGATTTTGACTTCGGTATTGCGGCCGAAAGGTGGGAG
TGGGGGCAGTGGGAAGACAGCCCATGTGAATATTGATGCGTTGGAGCCGG
AGAGGGCGGGGTATGCGAGGAAGAAGGGGCGGGGGGCGGTAAAAGGTGGT
GGAAAGAAGAAGAAGTAAGGTGCTGGCATGGAATGTGCTGCTGGGAGGGG
GCTGATATGGGGAAAGAGGAAAAACGGACAATATCTCAAGGGAACGATGA
ACAAGAGTGATGCGACGAAGGGGAGAGGGGGAAAGATGAAAAGAGAATTT
TGTGTTTTCCGCACACACGTTAGAAAGCCAAATTAAGTAATAGGAGAAAT
GATATTGTTTGCAAAGTCAAAGAACCAATAGGAAAGTAAGAGGGAGAA

Coding sequence (CDS) from alignment at scaffold_3:191075..196222+

>mRNA_71 ID=mRNA_71|Name=jgi.p|Nanoce1779_2|576113|organism=Nannochloropsis oceanica|type=CDS|length=2214bp|location=Sequence derived from alignment at scaffold_3:191075..196222+ (Nannochloropsis oceanica)
ATGCCCGCGAAAGTTGCTGTGGTCAAGGCCACGGAACTGATACCCAAGGC
GTTCAATGGCACGGTTGCAGTCCCCGAGGAGAAGTCTGATGATCTGTTGT
ACGACCTGCATCACTTGGCGGCCGTCGATTCCCATCCAGTCGACCTCGAA
AATTTTCAAGCCAATCCGGAAAAGTACCTGTTGGAAAGTGCCACCTTTGG
CCTTCAAGGCATCATCGACCGCCTCTTTGAATTGCCTTATGAGTCTTCCA
ACACTGGCCCCGTCGTGGCCTTACCTGCAGCCACCACCTATCTTCCCCGC
GCTCAACGCCTTCCTGAGGCAAAGAAGGAAACTCGATGGGAGAAATTCGC
CAGGGAGAAGGGGATCACGAACAAAAAGCGGGCACGAATGCTGTGGGATG
AAGAGGCGCAGGAGTGGCGACCTCGATGGGGATATAATCGAGCAAAGGGT
GGAGTGATGGATCAAGCGATTGTAGAAGTCATGCCTGGGGATGATCCGCT
TGTGGATCCCTGGACGGAGGCAAGGAATAGCAAGAGGGCACGGGTGGAAA
AGAACTTGATGCAGCAGGCTAAGAACAGGGGACTGGTAGGCGTGGGGACG
TTGGCGCCGGGGGCGAAGGCAGGAGGGAGAAAGGGGAAGAAGGAAAGGTT
GGCAGCGAAGGGACCGGCGTATGGGTTGCCTGTGGATTTGATGCCCACGA
AGAAGCACGAGAAGGCACCTGCTGGTACTGCTGCTGCTGCTGCTTCTGCG
GAGGGCACAAAGGCAGTTCCAAAGAAGAAGGGAAAGGCCGCAGGTTTGAA
AGCGTTGGAGGTGGCGCAACACTCGACGGCATCACTGGGAAAGTTTGACG
CGAAGCTGGTGGGGGAGCCAGAGAAGAAGGTGAAGAAGGTCAGAAAGGTT
GCGTCAGTTGCGGATAGCAAGGCCTTGCTTCACGAATCGAAAAAGATGAA
TTCGATTTTGACTTCGGTATTGCGGCCGAAAGGTGGGAGTGGGGGCAGTG
GGAAGACAGCCCATGTGAATATTGATGCGTTGGAGCCGGAGAGGGCGGGG
TATGCGAGGAAGAAGGGGCGGGGGGCGGTAAAAGGTGGTGGAAAGAAGAA
GAAGTAAATGCCCGCGAAAGTTGCTGTGGTCAAGGCCACGGAACTGATAC
CCAAGGCGTTCAATGGCACGGTTGCAGTCCCCGAGGAGAAGTCTGATGAT
CTGTTGTACGACCTGCATCACTTGGCGGCCGTCGATTCCCATCCAGTCGA
CCTCGAAAATTTTCAAGCCAATCCGGAAAAGTACCTGTTGGAAAGTGCCA
CCTTTGGCCTTCAAGGCATCATCGACCGCCTCTTTGAATTGCCTTATGAG
TCTTCCAACACTGGCCCCGTCGTGGCCTTACCTGCAGCCACCACCTATCT
TCCCCGCGCTCAACGCCTTCCTGAGGCAAAGAAGGAAACTCGATGGGAGA
AATTCGCCAGGGAGAAGGGGATCACGAACAAAAAGCGGGCACGAATGCTG
TGGGATGAAGAGGCGCAGGAGTGGCGACCTCGATGGGGATATAATCGAGC
AAAGGGTGGAGTGATGGATCAAGCGATTGTAGAAGTCATGCCTGGGGATG
ATCCGCTTGTGGATCCCTGGACGGAGGCAAGGAATAGCAAGAGGGCACGG
GTGGAAAAGAACTTGATGCAGCAGGCTAAGAACAGGGGACTGGTAGGCGT
GGGGACGTTGGCGCCGGGGGCGAAGGCAGGAGGGAGAAAGGGGAAGAAGG
AAAGGTTGGCAGCGAAGGGACCGGCGTATGGGTTGCCTGTGGATTTGATG
CCCACGAAGAAGCACGAGAAGGCACCTGCTGGTACTGCTGCTGCTGCTGC
TTCTGCGGAGGGCACAAAGGCAGTTCCAAAGAAGAAGGGAAAGGCCGCAG
GTTTGAAAGCGTTGGAGGTGGCGCAACACTCGACGGCATCACTGGGAAAG
TTTGACGCGAAGCTGGTGGGGGAGCCAGAGAAGAAGGTGAAGAAGGTCAG
AAAGGTTGCGTCAGTTGCGGATAGCAAGGCCTTGCTTCACGAATCGAAAA
AGATGAATTCGATTTTGACTTCGGTATTGCGGCCGAAAGGTGGGAGTGGG
GGCAGTGGGAAGACAGCCCATGTGAATATTGATGCGTTGGAGCCGGAGAG
GGCGGGGTATGCGAGGAAGAAGGGGCGGGGGGCGGTAAAAGGTGGTGGAA
AGAAGAAGAAGTAA

Synonyms

Publications