jgi.p|Nanoce1779_2|567240, mRNA_7097 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|567240
Unique NamemRNA_7097
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length738
Alignment locationscaffold_16:286801..287538 +

Link to JBrowse

Properties
Property NameValue
TranscriptId567326
TrackFilteredModels2
ProteinId567240
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:286801..287538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|567240gene_7097Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|567240mRNA_7097-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7097CDS_7097Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7097 ID=mRNA_7097|Name=jgi.p|Nanoce1779_2|567240|organism=Nannochloropsis oceanica|type=mRNA|length=738bp
ATGTGGAGTGGTTTTGGATTGGCATCAGCGGTTGGGGGACCGACGGGGCT
GGCGAATGGTGGAGGGGGATGGGCCAAGAAGGAGGCGAGAAAGGTGGAGA
AGAAGTGTCAACCGATAGTAGGCGGAGGAAGTGATGCTGCTTCTTGTTGT
CAGGAGGAGCCTGGAGGAAAGGAGAGTGACGACACCATGCTAAGAAAGAA
GACAGCAGCCGCAGCCGCAGCCGCAGTAGCCGCAGCAGCAGACGCAACCG
ACAACGAAGACAACGAAGACGAAGACGAAGACGAGGACGCTTCCCTTCTG
TTCACCCTTTCCCTGTATAATAAGCACACCCACGCGTCCGCATGCTTTAT
CTCCACCCGTCTTGTCACGGACCGTCCGCCTCGCTGGCAAGGCCGTTATT
GGGACGGGCCCTTTTCTGGAGCTGATGGGCAACCAACCACGAGGATCGTG
CTTGATCCTACGCATACATTAATCATGCTCCCGATTGTAGAAATGGTGGA
CTGGGGGGATAAGACGCTTTTGTTGATGGTAAGGGTGGATCTGAGGATTT
GTCAGTGTGCGGAGGAGGGGGAGGAGGAGGTGGGAGGGAGGGAGGGAGGA
GCGATGAACATGGAGACGGGAAGAATGAATCAGGTAGGGTGTCGGTGTTC
GCCTTTTGATGGGCTTGGAATGATCCATGAAGAGGGAATGTGGATTCTAC
TAAGAGATCTGCTGGTGAACAAGCTGCGATGGTTTTAG
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protein sequence of jgi.p|Nanoce1779_2|567240

>mRNA_7097-protein ID=mRNA_7097-protein|Name=jgi.p|Nanoce1779_2|567240|organism=Nannochloropsis oceanica|type=polypeptide|length=246bp
MWSGFGLASAVGGPTGLANGGGGWAKKEARKVEKKCQPIVGGGSDAASCC
QEEPGGKESDDTMLRKKTAAAAAAAVAAAADATDNEDNEDEDEDEDASLL
FTLSLYNKHTHASACFISTRLVTDRPPRWQGRYWDGPFSGADGQPTTRIV
LDPTHTLIMLPIVEMVDWGDKTLLLMVRVDLRICQCAEEGEEEVGGREGG
AMNMETGRMNQVGCRCSPFDGLGMIHEEGMWILLRDLLVNKLRWF*
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mRNA from alignment at scaffold_16:286801..287538+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7097 ID=mRNA_7097|Name=jgi.p|Nanoce1779_2|567240|organism=Nannochloropsis oceanica|type=mRNA|length=738bp|location=Sequence derived from alignment at scaffold_16:286801..287538+ (Nannochloropsis oceanica)
ATGTGGAGTGGTTTTGGATTGGCATCAGCGGTTGGGGGACCGACGGGGCT
GGCGAATGGTGGAGGGGGATGGGCCAAGAAGGAGGCGAGAAAGGTGGAGA
AGAAGTGTCAACCGATAGTAGGCGGAGGAAGTGATGCTGCTTCTTGTTGT
CAGGAGGAGCCTGGAGGAAAGGAGAGTGACGACACCATGCTAAGAAAGAA
GACAGCAGCCGCAGCCGCAGCCGCAGTAGCCGCAGCAGCAGACGCAACCG
ACAACGAAGACAACGAAGACGAAGACGAAGACGAGGACGCTTCCCTTCTG
TTCACCCTTTCCCTGTATAATAAGCACACCCACGCGTCCGCATGCTTTAT
CTCCACCCGTCTTGTCACGGACCGTCCGCCTCGCTGGCAAGGCCGTTATT
GGGACGGGCCCTTTTCTGGAGCTGATGGGCAACCAACCACGAGGATCGTG
CTTGATCCTACGCATACATTAATCATGCTCCCGATTGTAGAAATGGTGGA
CTGGGGGGATAAGACGCTTTTGTTGATGGTAAGGGTGGATCTGAGGATTT
GTCAGTGTGCGGAGGAGGGGGAGGAGGAGGTGGGAGGGAGGGAGGGAGGA
GCGATGAACATGGAGACGGGAAGAATGAATCAGGTAGGGTGTCGGTGTTC
GCCTTTTGATGGGCTTGGAATGATCCATGAAGAGGGAATGTGGATTCTAC
TAAGAGATCTGCTGGTGAACAAGCTGCGATGGTTTTAG
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Coding sequence (CDS) from alignment at scaffold_16:286801..287538+

>mRNA_7097 ID=mRNA_7097|Name=jgi.p|Nanoce1779_2|567240|organism=Nannochloropsis oceanica|type=CDS|length=738bp|location=Sequence derived from alignment at scaffold_16:286801..287538+ (Nannochloropsis oceanica)
ATGTGGAGTGGTTTTGGATTGGCATCAGCGGTTGGGGGACCGACGGGGCT
GGCGAATGGTGGAGGGGGATGGGCCAAGAAGGAGGCGAGAAAGGTGGAGA
AGAAGTGTCAACCGATAGTAGGCGGAGGAAGTGATGCTGCTTCTTGTTGT
CAGGAGGAGCCTGGAGGAAAGGAGAGTGACGACACCATGCTAAGAAAGAA
GACAGCAGCCGCAGCCGCAGCCGCAGTAGCCGCAGCAGCAGACGCAACCG
ACAACGAAGACAACGAAGACGAAGACGAAGACGAGGACGCTTCCCTTCTG
TTCACCCTTTCCCTGTATAATAAGCACACCCACGCGTCCGCATGCTTTAT
CTCCACCCGTCTTGTCACGGACCGTCCGCCTCGCTGGCAAGGCCGTTATT
GGGACGGGCCCTTTTCTGGAGCTGATGGGCAACCAACCACGAGGATCGTG
CTTGATCCTACGCATACATTAATCATGCTCCCGATTGTAGAAATGGTGGA
CTGGGGGGATAAGACGCTTTTGTTGATGGTAAGGGTGGATCTGAGGATTT
GTCAGTGTGCGGAGGAGGGGGAGGAGGAGGTGGGAGGGAGGGAGGGAGGA
GCGATGAACATGGAGACGGGAAGAATGAATCAGGTAGGGTGTCGGTGTTC
GCCTTTTGATGGGCTTGGAATGATCCATGAAGAGGGAATGTGGATTCTAC
TAAGAGATCTGCTGGTGAACAAGCTGCGATGGTTTTAG
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Synonyms
Publications