jgi.p|Nanoce1779_2|595602, mRNA_7096 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595602
Unique NamemRNA_7096
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1552
Alignment locationscaffold_16:285806..287427 -

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Properties
Property NameValue
TranscriptId595688
TrackFilteredModels2
ProteinId595602
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:285806..287427 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595602gene_7096Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595602mRNA_7096-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7096CDS_7096Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7096 ID=mRNA_7096|Name=jgi.p|Nanoce1779_2|595602|organism=Nannochloropsis oceanica|type=mRNA|length=1552bp
CATTCTTCCCGTCTCCATGTTCATCGCTCCTCCCTCCCTCCCTCCCACCT
CCTCCTCCCCCTCCTCCGCACACTGACAAATCCTCAGATCCACCCTTACC
ATCAACAAAAGCGTCTTATCCCCCCAGTCCACCATTTCTACAATCGGGAG
CATGATTAATGTATGCGTAGGATCAAGCACGATCCTCGTGGTTGGTTGCC
CATCAGCTCCAGAAAAGGGCCCGTCCCAATAACGGCCTTGCCAGCGAGGC
GGACGGTCCGTGACAAGACGGGTGGAGATAAAGCATGCGGACGCGTGGGT
GTGCTTATTATACAGGGAAAGGGTGAACAGAAGGGAAGCGTCCTCGTCTT
CGTCTTCGTCTTCGTTGTCTTCGTTGTCGGTTGCGTCTGCTGCTGCGGCT
ACTGCGGCTGCGGCTGCGGCTGCTGTCTTCTTTCTTAGCATGGTGTCGTC
ACTCTCCTTTCCTCCAGGCTCCTCCTGACAACAAGAAGCAGCATCACTTC
CTCCGCCTACTATCGGTTGACACTTCTTCTCCACCTTTCTCGCCTCCTTC
TTGGCCCATCCCCCTCCACCATTCGCCAGCCCCGTCGGTCCCCCAACCGC
TGATGCCAATCCAAAACCACTCCACATGCTGCTGTTTCTCCTCCTCCGCG
GCAGAATCCCTCCGCCCCCGTCAAAGTTTGGAGGGGGTGGTCTCAAGCGT
GACTTGATATCTATCCCTAGTCTCAACCCATCTCCGACGACCGAGTGTCC
GCTCGAGGTAAAGAGTCTCCCCCTGTCTTCGACCTCCCCCAATGCCACCG
CAGCAGAATACACCAAAGTCTTATCTTTCCCCTCCCGTATCTCCAAAATC
CATGTGAAATTTGCAAAAAAACTGTCAGGTGACGGCGTACAACAGACCAT
CTGTCCGGCCGCGCCATGGGGACGAAGGAGGGATTGATGAGCATAGCGCG
CGTGTTGTTGCCCAAGGTAAAAACTGTGCACTCCTTTAGCGACCTCCAAG
CGTTCAAGGAGCAGCTGGCCATATTGTTGCTTGATGGCGGGTTCCCAGAC
GTTGTCGCGGGTGGCCACACGGCGCCAAGCATGGTTCAACGAACAGAGAG
GGAGCAGTGCGCCCGCGGTACTAGGGACATATTCCAAGATGCGCTGCAAG
ATATCGTCAGGCAGCGAAGGGGGACTGTGCGGAATACCCGTGCAGAGGAC
GAGAGGGGACGGAGATCTTTGTGCTCCTGGCTTTGTGGCTTGCGGGTGAC
CTGTATGTGGGAGGGAAGAGAGGAACCAGGGAGTGACCACACAGTGACAG
ACAAGCTCTTCTGGAGCAAGGCAGGAGCCAGGGAATTTTCTTACGTAAAA
GGACACCTATGGCTCGCTGTGACTGCCCTTGGAAGAACTCTGAAGCACGC
ATGCGTCGGTTCGCCAACAACAGGCATCACAACCCCCTCCCAACTGACAC
AACACTCATATGCACATACAGGGATTGTTGTTGTTGTCGTGGAGAGTGCA
TGCTCAAGACGGTAGGATTTGTGAGGACTTCCTTCATTCTTCCTTGTGCG
CC
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protein sequence of jgi.p|Nanoce1779_2|595602

>mRNA_7096-protein ID=mRNA_7096-protein|Name=jgi.p|Nanoce1779_2|595602|organism=Nannochloropsis oceanica|type=polypeptide|length=200bp
MGTKEGLMSIARVLLPKVKTVHSFSDLQAFKEQLAILLLDGGFPDVVAGG
HTAPSMVQRTEREQCARGTRDIFQDALQDIVRQRRGTVRNTRAEDERGRR
SLCSWLCGLRVTCMWEGREEPGSDHTVTDKLFWSKAGAREFSYVKGHLWL
AVTALGRTLKHACVGSPTTGITTPSQLTQHSYAHTGIVVVVVESACSRR*
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mRNA from alignment at scaffold_16:285806..287427-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7096 ID=mRNA_7096|Name=jgi.p|Nanoce1779_2|595602|organism=Nannochloropsis oceanica|type=mRNA|length=1622bp|location=Sequence derived from alignment at scaffold_16:285806..287427- (Nannochloropsis oceanica)
CATTCTTCCCGTCTCCATGTTCATCGCTCCTCCCTCCCTCCCTCCCACCT
CCTCCTCCCCCTCCTCCGCACACTGACAAATCCTCAGATCCACCCTTACC
ATCAACAAAAGCGTCTTATCCCCCCAGTCCACCATTTCTACAATCGGGAG
CATGATTAATGTATGCGTAGGATCAAGCACGATCCTCGTGGTTGGTTGCC
CATCAGCTCCAGAAAAGGGCCCGTCCCAATAACGGCCTTGCCAGCGAGGC
GGACGGTCCGTGACAAGACGGGTGGAGATAAAGCATGCGGACGCGTGGGT
GTGCTTATTATACAGGGAAAGGGTGAACAGAAGGGAAGCGTCCTCGTCTT
CGTCTTCGTCTTCGTTGTCTTCGTTGTCGGTTGCGTCTGCTGCTGCGGCT
ACTGCGGCTGCGGCTGCGGCTGCTGTCTTCTTTCTTAGCATGGTGTCGTC
ACTCTCCTTTCCTCCAGGCTCCTCCTGACAACAAGAAGCAGCATCACTTC
CTCCGCCTACTATCGGTTGACACTTCTTCTCCACCTTTCTCGCCTCCTTC
TTGGCCCATCCCCCTCCACCATTCGCCAGCCCCGTCGGTCCCCCAACCGC
TGATGCCAATCCAAAACCACTCCACATGCTGCTGTTTCTCCTCCTCCGCG
GCAGAATCCCTCCGCCCCCGTCAAAGTTTGGAGGGGGTGGTCTCAAGCGT
GACTTGATATCTATCCCTAGTCTCAACCCATCTCCGACGACCGAGTGTCC
GCTCGAGGTAAAGAGTCTCCCCCTGTCTTCGACCTCCCCCAATGCCACCG
CAGCAGAATACACCAAAGTCTTATCTTTCCCCTCCCGTATCTCCAAAATC
CATGTGAAATTTGCAAAAAAACTGTCAGGTGACGGCGTACAACAGACCAT
CTGTCCGGCCGCGCCATGGGGACGAAGGAGGGATTGATGAGCATAGCGCG
CGTGTTGTTGCCCAAGGTAAAAACTGTGCACTCCTTTAGCGACCTCCAAG
CGTTCAAGGAGCAGCTGGCCATATTGTTGCTTGATGGCGGGTTCCCAGAC
GTTGTCGCGGGTGGCCACACGGCGCCAAGCATGGTTCAACGAACAGAGAG
GGAGCAGTGCGCCCGCGGTACTAGGGACATATTCCAAGATGCGCTGCAAG
ATATCGTCAGGCAGCGAAGGGGGACTGTGCGGAATACCCGTGCAGAGGAC
GAGAGGGGACGGAGATCTTTGTGCTTGAGGAGACGATGTTGGTGAAAATG
AGGATGCGGAGTTCCTTGTCATCGCTCTTTAAGGAAGGCTTACCTCCTGG
CTTTGTGGCTTGCGGGTGACCTGTATGTGGGAGGGAAGAGAGGAACCAGG
GAGTGACCACACAGTGACAGACAAGCTCTTCTGGAGCAAGGCAGGAGCCA
GGGAATTTTCTTACGTAAAAGGACACCTATGGCTCGCTGTGACTGCCCTT
GGAAGAACTCTGAAGCACGCATGCGTCGGTTCGCCAACAACAGGCATCAC
AACCCCCTCCCAACTGACACAACACTCATATGCACATACAGGGATTGTTG
TTGTTGTCGTGGAGAGTGCATGCTCAAGACGGTAGGATTTGTGAGGACTT
CCTTCATTCTTCCTTGTGCGCC
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Coding sequence (CDS) from alignment at scaffold_16:285806..287427-

>mRNA_7096 ID=mRNA_7096|Name=jgi.p|Nanoce1779_2|595602|organism=Nannochloropsis oceanica|type=CDS|length=1200bp|location=Sequence derived from alignment at scaffold_16:285806..287427- (Nannochloropsis oceanica)
CTCCTGGCTTTGTGGCTTGCGGGTGACCTGTATGTGGGAGGGAAGAGAGG
AACCAGGGAGTGACCACACAGTGACAGACAAGCTCTTCTGGAGCAAGGCA
GGAGCCAGGGAATTTTCTTACGTAAAAGGACACCTATGGCTCGCTGTGAC
TGCCCTTGGAAGAACTCTGAAGCACGCATGCGTCGGTTCGCCAACAACAG
GCATCACAACCCCCTCCCAACTGACACAACACTCATATGCACATACAGGG
ATTGTTGTTGTTGTCGTGGAGAGTGCATGCTCAAGACGGTAGATGGGGAC
GAAGGAGGGATTGATGAGCATAGCGCGCGTGTTGTTGCCCAAGGTAAAAA
CTGTGCACTCCTTTAGCGACCTCCAAGCGTTCAAGGAGCAGCTGGCCATA
TTGTTGCTTGATGGCGGGTTCCCAGACGTTGTCGCGGGTGGCCACACGGC
GCCAAGCATGGTTCAACGAACAGAGAGGGAGCAGTGCGCCCGCGGTACTA
GGGACATATTCCAAGATGCGCTGCAAGATATCGTCAGGCAGCGAAGGGGG
ACTGTGCGGAATACCCGTGCAGAGGACGAGAGGGGACGGAGATCTTTGTG
CTCCTGGCTTTGTGGCTTGCGGGTGACCTGTATGTGGGAGGGAAGAGAGG
AACCAGGGAGTGACCACACAGTGACAGACAAGCTCTTCTGGAGCAAGGCA
GGAGCCAGGGAATTTTCTTACGTAAAAGGACACCTATGGCTCGCTGTGAC
TGCCCTTGGAAGAACTCTGAAGCACGCATGCGTCGGTTCGCCAACAACAG
GCATCACAACCCCCTCCCAACTGACACAACACTCATATGCACATACAGGG
ATTGTTGTTGTTGTCGTGGAGAGTGCATGCTCAAGACGGTAGATGGGGAC
GAAGGAGGGATTGATGAGCATAGCGCGCGTGTTGTTGCCCAAGGTAAAAA
CTGTGCACTCCTTTAGCGACCTCCAAGCGTTCAAGGAGCAGCTGGCCATA
TTGTTGCTTGATGGCGGGTTCCCAGACGTTGTCGCGGGTGGCCACACGGC
GCCAAGCATGGTTCAACGAACAGAGAGGGAGCAGTGCGCCCGCGGTACTA
GGGACATATTCCAAGATGCGCTGCAAGATATCGTCAGGCAGCGAAGGGGG
ACTGTGCGGAATACCCGTGCAGAGGACGAGAGGGGACGGAGATCTTTGTG
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Synonyms
Publications