jgi.p|Nanoce1779_2|567238, mRNA_7094 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|567238
Unique NamemRNA_7094
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length633
Alignment locationscaffold_16:282451..283083 -

Link to JBrowse

Properties
Property NameValue
TranscriptId567324
TrackFilteredModels2
ProteinId567238
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:282451..283083 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|567238gene_7094Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7094CDS_7094Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|567238mRNA_7094-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7094 ID=mRNA_7094|Name=jgi.p|Nanoce1779_2|567238|organism=Nannochloropsis oceanica|type=mRNA|length=633bp
ATGCCGTTCGCTACATTATGTTTGACACGCTCGCATCATTTGCAAAAGGA
GATGGGGAAGGAAGAGGAAGGAAAGCGGTGTCGTAATTTGGTTCCAGAGG
GCTACGGCATCACGAATAGAGAGGAGGAAGGGATAGAAGGGGGCGAGGAA
GACCCTTGTGTCTTGCCTATGTTGCCGCTTACCTTCACTTCGAGTGAGAC
CGAGATGATAGTGGCAGACTGGGAGCTTCACATTGTCTACGATGAAATAT
ACAATATACCCGCTCTTTGGTTCAAGGCCACAAGATCGGACGGCGTGCCG
TTGACCAGAGAGGTAGTGGCTTGTTTGTGCGGCGTAAGTGTTGGGGAAGG
AGGGGGGGGGAGAGGGGGGGAGTTGACGGTGTTGTCGCAAGACGATCATC
CCATCCTCGGCCAGCCCTTTTTTTTCTTGCATCCTTGTGGCACTCCTGGC
CGTATGGCTCGCCTTTTAATCGCGAGGGAAAGGATAGGCGAGGACAATGA
CGACGGGAAAAAGGCACTTATAGGACTGACCTACTTGGTAAAGTGGTTTG
GCCTTGTCGCCCCCTTCCTGGGTCTGCGCTTTCCACCACCATTTGTCCAA
GCTATGTTGATCTCAGTGGAACAAAAAAAATGA
back to top

protein sequence of jgi.p|Nanoce1779_2|567238

>mRNA_7094-protein ID=mRNA_7094-protein|Name=jgi.p|Nanoce1779_2|567238|organism=Nannochloropsis oceanica|type=polypeptide|length=211bp
MPFATLCLTRSHHLQKEMGKEEEGKRCRNLVPEGYGITNREEEGIEGGEE
DPCVLPMLPLTFTSSETEMIVADWELHIVYDEIYNIPALWFKATRSDGVP
LTREVVACLCGVSVGEGGGGRGGELTVLSQDDHPILGQPFFFLHPCGTPG
RMARLLIARERIGEDNDDGKKALIGLTYLVKWFGLVAPFLGLRFPPPFVQ
AMLISVEQKK*
back to top

mRNA from alignment at scaffold_16:282451..283083-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7094 ID=mRNA_7094|Name=jgi.p|Nanoce1779_2|567238|organism=Nannochloropsis oceanica|type=mRNA|length=633bp|location=Sequence derived from alignment at scaffold_16:282451..283083- (Nannochloropsis oceanica)
ATGCCGTTCGCTACATTATGTTTGACACGCTCGCATCATTTGCAAAAGGA
GATGGGGAAGGAAGAGGAAGGAAAGCGGTGTCGTAATTTGGTTCCAGAGG
GCTACGGCATCACGAATAGAGAGGAGGAAGGGATAGAAGGGGGCGAGGAA
GACCCTTGTGTCTTGCCTATGTTGCCGCTTACCTTCACTTCGAGTGAGAC
CGAGATGATAGTGGCAGACTGGGAGCTTCACATTGTCTACGATGAAATAT
ACAATATACCCGCTCTTTGGTTCAAGGCCACAAGATCGGACGGCGTGCCG
TTGACCAGAGAGGTAGTGGCTTGTTTGTGCGGCGTAAGTGTTGGGGAAGG
AGGGGGGGGGAGAGGGGGGGAGTTGACGGTGTTGTCGCAAGACGATCATC
CCATCCTCGGCCAGCCCTTTTTTTTCTTGCATCCTTGTGGCACTCCTGGC
CGTATGGCTCGCCTTTTAATCGCGAGGGAAAGGATAGGCGAGGACAATGA
CGACGGGAAAAAGGCACTTATAGGACTGACCTACTTGGTAAAGTGGTTTG
GCCTTGTCGCCCCCTTCCTGGGTCTGCGCTTTCCACCACCATTTGTCCAA
GCTATGTTGATCTCAGTGGAACAAAAAAAATGA
back to top

Coding sequence (CDS) from alignment at scaffold_16:282451..283083-

>mRNA_7094 ID=mRNA_7094|Name=jgi.p|Nanoce1779_2|567238|organism=Nannochloropsis oceanica|type=CDS|length=633bp|location=Sequence derived from alignment at scaffold_16:282451..283083- (Nannochloropsis oceanica)
ATGCCGTTCGCTACATTATGTTTGACACGCTCGCATCATTTGCAAAAGGA
GATGGGGAAGGAAGAGGAAGGAAAGCGGTGTCGTAATTTGGTTCCAGAGG
GCTACGGCATCACGAATAGAGAGGAGGAAGGGATAGAAGGGGGCGAGGAA
GACCCTTGTGTCTTGCCTATGTTGCCGCTTACCTTCACTTCGAGTGAGAC
CGAGATGATAGTGGCAGACTGGGAGCTTCACATTGTCTACGATGAAATAT
ACAATATACCCGCTCTTTGGTTCAAGGCCACAAGATCGGACGGCGTGCCG
TTGACCAGAGAGGTAGTGGCTTGTTTGTGCGGCGTAAGTGTTGGGGAAGG
AGGGGGGGGGAGAGGGGGGGAGTTGACGGTGTTGTCGCAAGACGATCATC
CCATCCTCGGCCAGCCCTTTTTTTTCTTGCATCCTTGTGGCACTCCTGGC
CGTATGGCTCGCCTTTTAATCGCGAGGGAAAGGATAGGCGAGGACAATGA
CGACGGGAAAAAGGCACTTATAGGACTGACCTACTTGGTAAAGTGGTTTG
GCCTTGTCGCCCCCTTCCTGGGTCTGCGCTTTCCACCACCATTTGTCCAA
GCTATGTTGATCTCAGTGGAACAAAAAAAATGA
back to top
Synonyms
Publications