jgi.p|Nanoce1779_2|631642, mRNA_7093 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|631642
Unique Name	mRNA_7093
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1859
Alignment location	scaffold_16:280880..282738 -

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Properties


Property Name	Value
TranscriptId	631728
Track	FilteredModels2
ProteinId	631642

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_16	supercontig	scaffold_16:280880..282738 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|631642	gene_7093	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|631642	mRNA_7093-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7093	CDS_7093	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_16:280880..282738-
coding sequence from alignment at scaffold_16:280880..282738-

mRNA sequence

>mRNA_7093 ID=mRNA_7093|Name=jgi.p|Nanoce1779_2|631642|organism=Nannochloropsis oceanica|type=mRNA|length=1859bp
GAAGGAGGGGGGGGGAGAGGGGGGGAGTTGACGGTGTTGTCGCAAGACGA
TCATCCCATCCTCGGCCAGCCCTTTTTTTTCTTGCATCCTTGTGGCACTC
CTGGCCGTATGGCTCGCCTTTTAATCGCGAGGGAAAGGATAGGCGAGGAC
AATGACGACGGGAAAAAGGCACTTATAGGACTGACCTACTTGGTAAAGTG
GTTTGGCCTTGTCGCCCCCTTCCTGGGTCTGCGCTTTCCACCACCATTTG
TCCAAGCTATGTTGATCTCAGTGGAACAAAAAAAATGAAGATGTTTTACA
TCTTGTTTACAGACAGGATCAAAACTGGATCCTGTTTTTCACATGAAGCC
ACATTACCAACGATTGATACCCTCTGTCATCTACTATCTTCAGAACGACC
ACAAAATGTTTCATTTGGTGACATCAGGGCGTGGACCTGCTGCGGCCCAT
GAGCTCCTCTGCTCTTCAAATGCGTTGAAGTTCGAGAATTTAAAAATGGA
GAAAATGGGGAGTTCTCTCTCTGCCCTCCGAAAATCACGTGAATCTCTGC
ACGAAATCAATAAGTCATATGCCAACTTACGTGGCATGACATACAAGCAA
CATGAAGGTGGATGTTTCAATGCCTCGGTCACTTTTGAAGCTTACGTGTC
AAGTATTTCTTCAAACGAAAAAGCGAGCTGTTCTTTTTGTCGTCGTTGCT
CGCTTGCCCCAAAGGAAGAGCAATTTTCTAAAGGACTTGGGCCCTCTTTC
TAGATCTAGGTGAAAAAGAGCCTTGTCACCACTTACACATCTTATCTCTT
CACTTCCCCAACTCACCCACTCCCTACGACTTATCTCACCTCGCATTCTG
CCCCTACTCCTCTTCTCCCTTTTCCCGTCCATTCCCACATGACACACAGC
ATTGCCGATGGCGACACATGCTGCTGCTGCCCCGGCCCCTGCGGACACCT
CAAAACGAGGCAGGAAACTTACCATTATTAGTGGCCTGACCTTGCTCGTG
ATGGTGGCCGTGGCACTGGGTGCCTACATCCACCTGACCCGCCATGACGC
CCGCTCCCTCTTCCACGGCCACCGCAAATCGCCGGCCATCAGAGCCACTA
GCACGGTAAGTGCCCAGCTTCGACGGCACTTGGCGTGGGGTGACGAAGAG
GACATGGAGGATGTGCTTGCAGTTGGAGATGTTGGTGAGGAGGATGGGGA
AGACATGGAGGGGCCGGGCGTGCCAGAAGACGGATCGGCGACTTCCACGA
AGAAGAAGAAGAAGAAGTTTAGTTTTGACGATGAGTTGGATGGGGACGAG
GAGCTGGCTGCAGAGGAGGATGGGAATGATGACGAGGAGGATGGGGAGGT
CGATGAGGAGGATGGGGAGGACGAGGGGGATGATGGGGGCGAAGATGACG
AGGATGCGGGCGACGAGGAGGGGGATGGGGACGACGAGGAGGAGCCGGAT
GATATGGCAGAAGGCGGCACGATGACGGCCTCCAAGAAGGGGAAAAAGAA
GAGAAAATCTCGAGTGGGTGACGCATCAGGGGCGAACGGGGAGAAAGGGG
CGCCCAAGAAGAAGAAGAAGAATAAGAAGAAGACTGCGACAAAGAAGAAG
AAGGGTGGGTCTTCACGCGGGGGAAGGTCCTCGCGCATGTCAAATGCGGG
AAGTCTGAACCAACCATTGGACGGGACGAAGGATCCCTTAATCCCTACAC
TGGACACGCGGGATAATAGGCGATTCGCAGACGAGGTGGTGCTCCCGGAC
GGTCACACAGTCAGCATTGATGTTCCTAGTCCTTAAATGATGATTGATGG
AGGGAGGGAGGGAGGGTGGCTCGAGGGCTCGAGGGAGGGAGGGAGGGAAG
AAAACATGG

protein sequence of jgi.p|Nanoce1779_2|631642

>mRNA_7093-protein ID=mRNA_7093-protein|Name=jgi.p|Nanoce1779_2|631642|organism=Nannochloropsis oceanica|type=polypeptide|length=293bp
MATHAAAAPAPADTSKRGRKLTIISGLTLLVMVAVALGAYIHLTRHDARS
LFHGHRKSPAIRATSTVSAQLRRHLAWGDEEDMEDVLAVGDVGEEDGEDM
EGPGVPEDGSATSTKKKKKKFSFDDELDGDEELAAEEDGNDDEEDGEVDE
EDGEDEGDDGGEDDEDAGDEEGDGDDEEEPDDMAEGGTMTASKKGKKKRK
SRVGDASGANGEKGAPKKKKKNKKKTATKKKKGGSSRGGRSSRMSNAGSL
NQPLDGTKDPLIPTLDTRDNRRFADEVVLPDGHTVSIDVPSP*

mRNA from alignment at scaffold_16:280880..282738-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7093 ID=mRNA_7093|Name=jgi.p|Nanoce1779_2|631642|organism=Nannochloropsis oceanica|type=mRNA|length=1859bp|location=Sequence derived from alignment at scaffold_16:280880..282738- (Nannochloropsis oceanica)
GAAGGAGGGGGGGGGAGAGGGGGGGAGTTGACGGTGTTGTCGCAAGACGA
TCATCCCATCCTCGGCCAGCCCTTTTTTTTCTTGCATCCTTGTGGCACTC
CTGGCCGTATGGCTCGCCTTTTAATCGCGAGGGAAAGGATAGGCGAGGAC
AATGACGACGGGAAAAAGGCACTTATAGGACTGACCTACTTGGTAAAGTG
GTTTGGCCTTGTCGCCCCCTTCCTGGGTCTGCGCTTTCCACCACCATTTG
TCCAAGCTATGTTGATCTCAGTGGAACAAAAAAAATGAAGATGTTTTACA
TCTTGTTTACAGACAGGATCAAAACTGGATCCTGTTTTTCACATGAAGCC
ACATTACCAACGATTGATACCCTCTGTCATCTACTATCTTCAGAACGACC
ACAAAATGTTTCATTTGGTGACATCAGGGCGTGGACCTGCTGCGGCCCAT
GAGCTCCTCTGCTCTTCAAATGCGTTGAAGTTCGAGAATTTAAAAATGGA
GAAAATGGGGAGTTCTCTCTCTGCCCTCCGAAAATCACGTGAATCTCTGC
ACGAAATCAATAAGTCATATGCCAACTTACGTGGCATGACATACAAGCAA
CATGAAGGTGGATGTTTCAATGCCTCGGTCACTTTTGAAGCTTACGTGTC
AAGTATTTCTTCAAACGAAAAAGCGAGCTGTTCTTTTTGTCGTCGTTGCT
CGCTTGCCCCAAAGGAAGAGCAATTTTCTAAAGGACTTGGGCCCTCTTTC
TAGATCTAGGTGAAAAAGAGCCTTGTCACCACTTACACATCTTATCTCTT
CACTTCCCCAACTCACCCACTCCCTACGACTTATCTCACCTCGCATTCTG
CCCCTACTCCTCTTCTCCCTTTTCCCGTCCATTCCCACATGACACACAGC
ATTGCCGATGGCGACACATGCTGCTGCTGCCCCGGCCCCTGCGGACACCT
CAAAACGAGGCAGGAAACTTACCATTATTAGTGGCCTGACCTTGCTCGTG
ATGGTGGCCGTGGCACTGGGTGCCTACATCCACCTGACCCGCCATGACGC
CCGCTCCCTCTTCCACGGCCACCGCAAATCGCCGGCCATCAGAGCCACTA
GCACGGTAAGTGCCCAGCTTCGACGGCACTTGGCGTGGGGTGACGAAGAG
GACATGGAGGATGTGCTTGCAGTTGGAGATGTTGGTGAGGAGGATGGGGA
AGACATGGAGGGGCCGGGCGTGCCAGAAGACGGATCGGCGACTTCCACGA
AGAAGAAGAAGAAGAAGTTTAGTTTTGACGATGAGTTGGATGGGGACGAG
GAGCTGGCTGCAGAGGAGGATGGGAATGATGACGAGGAGGATGGGGAGGT
CGATGAGGAGGATGGGGAGGACGAGGGGGATGATGGGGGCGAAGATGACG
AGGATGCGGGCGACGAGGAGGGGGATGGGGACGACGAGGAGGAGCCGGAT
GATATGGCAGAAGGCGGCACGATGACGGCCTCCAAGAAGGGGAAAAAGAA
GAGAAAATCTCGAGTGGGTGACGCATCAGGGGCGAACGGGGAGAAAGGGG
CGCCCAAGAAGAAGAAGAAGAATAAGAAGAAGACTGCGACAAAGAAGAAG
AAGGGTGGGTCTTCACGCGGGGGAAGGTCCTCGCGCATGTCAAATGCGGG
AAGTCTGAACCAACCATTGGACGGGACGAAGGATCCCTTAATCCCTACAC
TGGACACGCGGGATAATAGGCGATTCGCAGACGAGGTGGTGCTCCCGGAC
GGTCACACAGTCAGCATTGATGTTCCTAGTCCTTAAATGATGATTGATGG
AGGGAGGGAGGGAGGGTGGCTCGAGGGCTCGAGGGAGGGAGGGAGGGAAG
AAAACATGG

Coding sequence (CDS) from alignment at scaffold_16:280880..282738-

>mRNA_7093 ID=mRNA_7093|Name=jgi.p|Nanoce1779_2|631642|organism=Nannochloropsis oceanica|type=CDS|length=879bp|location=Sequence derived from alignment at scaffold_16:280880..282738- (Nannochloropsis oceanica)
ATGGCGACACATGCTGCTGCTGCCCCGGCCCCTGCGGACACCTCAAAACG
AGGCAGGAAACTTACCATTATTAGTGGCCTGACCTTGCTCGTGATGGTGG
CCGTGGCACTGGGTGCCTACATCCACCTGACCCGCCATGACGCCCGCTCC
CTCTTCCACGGCCACCGCAAATCGCCGGCCATCAGAGCCACTAGCACGGT
AAGTGCCCAGCTTCGACGGCACTTGGCGTGGGGTGACGAAGAGGACATGG
AGGATGTGCTTGCAGTTGGAGATGTTGGTGAGGAGGATGGGGAAGACATG
GAGGGGCCGGGCGTGCCAGAAGACGGATCGGCGACTTCCACGAAGAAGAA
GAAGAAGAAGTTTAGTTTTGACGATGAGTTGGATGGGGACGAGGAGCTGG
CTGCAGAGGAGGATGGGAATGATGACGAGGAGGATGGGGAGGTCGATGAG
GAGGATGGGGAGGACGAGGGGGATGATGGGGGCGAAGATGACGAGGATGC
GGGCGACGAGGAGGGGGATGGGGACGACGAGGAGGAGCCGGATGATATGG
CAGAAGGCGGCACGATGACGGCCTCCAAGAAGGGGAAAAAGAAGAGAAAA
TCTCGAGTGGGTGACGCATCAGGGGCGAACGGGGAGAAAGGGGCGCCCAA
GAAGAAGAAGAAGAATAAGAAGAAGACTGCGACAAAGAAGAAGAAGGGTG
GGTCTTCACGCGGGGGAAGGTCCTCGCGCATGTCAAATGCGGGAAGTCTG
AACCAACCATTGGACGGGACGAAGGATCCCTTAATCCCTACACTGGACAC
GCGGGATAATAGGCGATTCGCAGACGAGGTGGTGCTCCCGGACGGTCACA
CAGTCAGCATTGATGTTCCTAGTCCTTAA

Synonyms

Publications