jgi.p|Nanoce1779_2|595565, mRNA_7086 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595565
Unique NamemRNA_7086
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length967
Alignment locationscaffold_16:259370..260737 -

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Properties
Property NameValue
TranscriptId595651
TrackFilteredModels2
ProteinId595565
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:259370..260737 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595565gene_7086Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595565mRNA_7086-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7086CDS_7086Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7086 ID=mRNA_7086|Name=jgi.p|Nanoce1779_2|595565|organism=Nannochloropsis oceanica|type=mRNA|length=967bp
CAGGCCTCTTCACTCTCCACTGACCTTTACAAGACACAAGAACCATGGTG
TGCGACGACAAGCGCAAAATCATTGCGTACCTTTGGTACTTGAACGCCCT
CCTCTCCATCGCCTATGTCATCGTGGCCATCGCCGCCGCGGCCAACCAGA
AGGACCTCGAGACAGCCACGACCAACCACGCCGCGGGCTTTGCGGCCATT
TGGTCCATGATCATTCTCTTCCTCATCATTGTTGGCGGTACCATCACCAT
GAAGAGGCTCAAGACCCCCATCGCCACCGGGGTGTTTCTGGGCGCCTCCA
TCATGTTCTCCCAAATGGAGCTGCTGCTTTTCGCCATCTTTGTGGGACTG
GCCAAGATGTCGAATGGAGATGTGGAAAGGAGGAGCAACAACGCCATGGC
TGTGTTTTCCTTCTTCTTGTTCGTATTGTACGCGGTCTTCTCCGTATGTC
TCTTTTTCCTCCGGCACTATGTCATCGACGACTCGCCTGCCCCCCCTGAG
AATAATTTTGCCTAAATCAAAGTTAGCAGCAACAGCAGCAGCAGGAGTAG
TGGAAGCAGCACTATAGTGCTGTAGTAGCAGGGCCTGTTGTTGCCGCGCC
AAGGGGGGGAGGAAGGAAGAAAGTAGGGATGAAGGGCATGAGTTTAATGT
GTGTGTGCGTCACAAGAGAAGATGCAAATAAGAAGACGAAGGGAAAAGAA
TAAGAGATGGGCAGCAATCATGATTGTGTAGGCGCCATAAGGTTCTTTCA
ATCAAGCAGTGCGCGTGATACCCCGAGGGGGAGGCGGGGGAATAGTGCAA
ACCAATAACGAACTTGTGTGTACGTGTATCTATCCGTCCTCCCAGCGCAA
ATCAAAGCATCAAAACCAGCATATATATACAGCATGCAGCAAAGAATAGA
AGGAAGAAAGAGATGCTTAAGGAAAGCGCTAATACCCCCCAAATTAAGGA
GAATTACACTTCCTCAC
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protein sequence of jgi.p|Nanoce1779_2|595565

>mRNA_7086-protein ID=mRNA_7086-protein|Name=jgi.p|Nanoce1779_2|595565|organism=Nannochloropsis oceanica|type=polypeptide|length=157bp
MVCDDKRKIIAYLWYLNALLSIAYVIVAIAAAANQKDLETATTNHAAGFA
AIWSMIILFLIIVGGTITMKRLKTPIATGVFLGASIMFSQMELLLFAIFV
GLAKMSNGDVERRSNNAMAVFSFFLFVLYAVFSVCLFFLRHYVIDDSPAP
PENNFA*
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mRNA from alignment at scaffold_16:259370..260737-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7086 ID=mRNA_7086|Name=jgi.p|Nanoce1779_2|595565|organism=Nannochloropsis oceanica|type=mRNA|length=1368bp|location=Sequence derived from alignment at scaffold_16:259370..260737- (Nannochloropsis oceanica)
CAGGCCTCTTCACTCTCCACTGACCTTTACAAGACACAAGAACCATGGTG
TGCGACGACAAGCGCAAAATCATTGCGTACCTTTGGTACTTGAACGCCCT
CCTCTCCATCGCCTATGTCATCGTGGCCATCGCCGCCGCGGCCAACCAGA
AGGACCTCGAGACAGCCACGACCAACCACGCCGCGGGCTTTGCGGCCATT
TGGTCCATGATCATTCTCTTCCTCATCATTGTTGGCGGTACCATCACCAT
GAAGAGGGTACGTGAAGTAATGGGGTGAAAGTGGGGGAGGAAAGGGAATA
GGGTGCAGAGGCTTTGACATGAGACCCGGATGAGAGAGTGCACCCTTTCT
GCTGCAAAGCATCACCCTACCAAAACATCACGACGGATTCTTTCTCGGGT
GCTTCCATAGTGTGCTTTACAGAGGGCCAGAAGCTATCTTTGCCGCCTTG
TGTGTGAGTCTGACAAGCACATCGGTGAACTGACCCTCCCTCCCTCCCTC
ACCCGCGCAGCTCAAGACCCCCATCGCCACCGGGGTGTTTCTGGGCGCCT
CCATCATGTTCTCCCAAATGGAGCTGCTGCTTTTCGCCATCTTTGTGGGA
CTGGCCAAGATGTCGAATGGAGATGTGGAAAGGAGGAGCAACAACGCCAT
GGCTGTGTTTTCCTTCTTCTTGTTCGTATTGTACGCGGTCTTCTCCGTAT
GTCTCTTTTTCCTCCGGCACTATGTCATCGACGGTATGGAGGAAGCGAGG
AAGTGAGGGAGGAAGGGAGAGGGGGGGGGGTCATGCTTAAACCACTAGGA
GAGATGGTATATTGTTTTTCGCTCACACCTCGTCCTAATCCCCTTTCTTT
CTCCCTCCTTCCCCTCCCCCACTACCCCCAGACTCGCCTGCCCCCCCTGA
GAATAATTTTGCCTAAATCAAAGTTAGCAGCAACAGCAGCAGCAGGAGTA
GTGGAAGCAGCACTATAGTGCTGTAGTAGCAGGGCCTGTTGTTGCCGCGC
CAAGGGGGGGAGGAAGGAAGAAAGTAGGGATGAAGGGCATGAGTTTAATG
TGTGTGTGCGTCACAAGAGAAGATGCAAATAAGAAGACGAAGGGAAAAGA
ATAAGAGATGGGCAGCAATCATGATTGTGTAGGCGCCATAAGGTTCTTTC
AATCAAGCAGTGCGCGTGATACCCCGAGGGGGAGGCGGGGGAATAGTGCA
AACCAATAACGAACTTGTGTGTACGTGTATCTATCCGTCCTCCCAGCGCA
AATCAAAGCATCAAAACCAGCATATATATACAGCATGCAGCAAAGAATAG
AAGGAAGAAAGAGATGCTTAAGGAAAGCGCTAATACCCCCCAAATTAAGG
AGAATTACACTTCCTCAC
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Coding sequence (CDS) from alignment at scaffold_16:259370..260737-

>mRNA_7086 ID=mRNA_7086|Name=jgi.p|Nanoce1779_2|595565|organism=Nannochloropsis oceanica|type=CDS|length=1413bp|location=Sequence derived from alignment at scaffold_16:259370..260737- (Nannochloropsis oceanica)
ACTCGCCTGCCCCCCCTGAGAATAATTTTGCCTAACTCAAGACCCCCATC
GCCACCGGGGTGTTTCTGGGCGCCTCCATCATGTTCTCCCAAATGGAGCT
GCTGCTTTTCGCCATCTTTGTGGGACTGGCCAAGATGTCGAATGGAGATG
TGGAAAGGAGGAGCAACAACGCCATGGCTGTGTTTTCCTTCTTCTTGTTC
GTATTGTACGCGGTCTTCTCCGTATGTCTCTTTTTCCTCCGGCACTATGT
CATCGACGATGGTGTGCGACGACAAGCGCAAAATCATTGCGTACCTTTGG
TACTTGAACGCCCTCCTCTCCATCGCCTATGTCATCGTGGCCATCGCCGC
CGCGGCCAACCAGAAGGACCTCGAGACAGCCACGACCAACCACGCCGCGG
GCTTTGCGGCCATTTGGTCCATGATCATTCTCTTCCTCATCATTGTTGGC
GGTACCATCACCATGAAGAGGACTCGCCTGCCCCCCCTGAGAATAATTTT
GCCTAACTCAAGACCCCCATCGCCACCGGGGTGTTTCTGGGCGCCTCCAT
CATGTTCTCCCAAATGGAGCTGCTGCTTTTCGCCATCTTTGTGGGACTGG
CCAAGATGTCGAATGGAGATGTGGAAAGGAGGAGCAACAACGCCATGGCT
GTGTTTTCCTTCTTCTTGTTCGTATTGTACGCGGTCTTCTCCGTATGTCT
CTTTTTCCTCCGGCACTATGTCATCGACGATGGTGTGCGACGACAAGCGC
AAAATCATTGCGTACCTTTGGTACTTGAACGCCCTCCTCTCCATCGCCTA
TGTCATCGTGGCCATCGCCGCCGCGGCCAACCAGAAGGACCTCGAGACAG
CCACGACCAACCACGCCGCGGGCTTTGCGGCCATTTGGTCCATGATCATT
CTCTTCCTCATCATTGTTGGCGGTACCATCACCATGAAGAGGACTCGCCT
GCCCCCCCTGAGAATAATTTTGCCTAACTCAAGACCCCCATCGCCACCGG
GGTGTTTCTGGGCGCCTCCATCATGTTCTCCCAAATGGAGCTGCTGCTTT
TCGCCATCTTTGTGGGACTGGCCAAGATGTCGAATGGAGATGTGGAAAGG
AGGAGCAACAACGCCATGGCTGTGTTTTCCTTCTTCTTGTTCGTATTGTA
CGCGGTCTTCTCCGTATGTCTCTTTTTCCTCCGGCACTATGTCATCGACG
ATGGTGTGCGACGACAAGCGCAAAATCATTGCGTACCTTTGGTACTTGAA
CGCCCTCCTCTCCATCGCCTATGTCATCGTGGCCATCGCCGCCGCGGCCA
ACCAGAAGGACCTCGAGACAGCCACGACCAACCACGCCGCGGGCTTTGCG
GCCATTTGGTCCATGATCATTCTCTTCCTCATCATTGTTGGCGGTACCAT
CACCATGAAGAGG
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Synonyms
Publications