jgi.p|Nanoce1779_2|595563, mRNA_7085 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595563
Unique NamemRNA_7085
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length869
Alignment locationscaffold_16:258501..259369 +

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Properties
Property NameValue
TranscriptId595649
TrackFilteredModels2
ProteinId595563
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:258501..259369 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595563gene_7085Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595563mRNA_7085-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7085CDS_7085Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7085 ID=mRNA_7085|Name=jgi.p|Nanoce1779_2|595563|organism=Nannochloropsis oceanica|type=mRNA|length=869bp
AACCACAGTACAACAAGCAACTCTCACACTCTAACATGGATTTGAAGCAG
TGTCTGGCCATCCTATCAGGGCGGGGCGTCTGCGAGCATGGCAGTCACGA
GCACAATCAACCCCACACGTCAACAGCATCATCCAAGACGACGGAACCTT
TGGGGCAAGTCATTGACTTGCTGTCGTCCGTTCCTCCAAGTTCAGGTACC
AGCAACGACAAGGTGGACAAGGACAACGCTGATCAAGCAGCAGCAGCGCT
GTCCACCGAGGCTCGGGCGCAGGCGAGCGTGGCAAAATTGCGGGAGGGAC
TCGCGGGGTTGGACGTGCAGGGCCTCATAAGAGCCTTTCGACAAGCTCAA
GAAGAACGCGCGCAGGCATACCAGCGATTCGATGAGGGTTTGAACAAGGT
GCTGGCTTCCCGGGCGTTTGCTGAATATGATGGGTTGTGTGCCGAGGCGA
CGGCGGGGTTTGCAGCTTTGAGTAACCTGGTCAATGCCGTGGAGCATTGC
CTAGGGGCAGCCCCCCATGAGCGGAAGGTGTTGGCTGGGCTTCTCCGACG
GGTGCAGACGGAGGAAAAAGAGAAATTGTCCTTGACGGCGGCGTTACACT
TGGAAACATTTCGGCTCGCAACGGCGGTGGCGGGGACGACACCGATGGGG
GGAGTGTCTGATGGTGAGGGAGGGGCAGGTGCCGGGGAGATGACGGAGAG
GGATGGGAGGGAAGAGATGTTGTTAAGGGAGGGCATCAAGGCACTTGATG
TGAGGATAGGGGAGGTAAAGGGTCGGATCAATGAGATCTTGGAAGAGTTG
AGGTATGAGGTAGAGGAGGAGTAGCTGTGAGTAAAGAAGAAAAAGATAAA
TAGAGGACAAGGCAGGCAC
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protein sequence of jgi.p|Nanoce1779_2|595563

>mRNA_7085-protein ID=mRNA_7085-protein|Name=jgi.p|Nanoce1779_2|595563|organism=Nannochloropsis oceanica|type=polypeptide|length=263bp
MDLKQCLAILSGRGVCEHGSHEHNQPHTSTASSKTTEPLGQVIDLLSSVP
PSSGTSNDKVDKDNADQAAAALSTEARAQASVAKLREGLAGLDVQGLIRA
FRQAQEERAQAYQRFDEGLNKVLASRAFAEYDGLCAEATAGFAALSNLVN
AVEHCLGAAPHERKVLAGLLRRVQTEEKEKLSLTAALHLETFRLATAVAG
TTPMGGVSDGEGGAGAGEMTERDGREEMLLREGIKALDVRIGEVKGRINE
ILEELRYEVEEE*
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mRNA from alignment at scaffold_16:258501..259369+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7085 ID=mRNA_7085|Name=jgi.p|Nanoce1779_2|595563|organism=Nannochloropsis oceanica|type=mRNA|length=869bp|location=Sequence derived from alignment at scaffold_16:258501..259369+ (Nannochloropsis oceanica)
AACCACAGTACAACAAGCAACTCTCACACTCTAACATGGATTTGAAGCAG
TGTCTGGCCATCCTATCAGGGCGGGGCGTCTGCGAGCATGGCAGTCACGA
GCACAATCAACCCCACACGTCAACAGCATCATCCAAGACGACGGAACCTT
TGGGGCAAGTCATTGACTTGCTGTCGTCCGTTCCTCCAAGTTCAGGTACC
AGCAACGACAAGGTGGACAAGGACAACGCTGATCAAGCAGCAGCAGCGCT
GTCCACCGAGGCTCGGGCGCAGGCGAGCGTGGCAAAATTGCGGGAGGGAC
TCGCGGGGTTGGACGTGCAGGGCCTCATAAGAGCCTTTCGACAAGCTCAA
GAAGAACGCGCGCAGGCATACCAGCGATTCGATGAGGGTTTGAACAAGGT
GCTGGCTTCCCGGGCGTTTGCTGAATATGATGGGTTGTGTGCCGAGGCGA
CGGCGGGGTTTGCAGCTTTGAGTAACCTGGTCAATGCCGTGGAGCATTGC
CTAGGGGCAGCCCCCCATGAGCGGAAGGTGTTGGCTGGGCTTCTCCGACG
GGTGCAGACGGAGGAAAAAGAGAAATTGTCCTTGACGGCGGCGTTACACT
TGGAAACATTTCGGCTCGCAACGGCGGTGGCGGGGACGACACCGATGGGG
GGAGTGTCTGATGGTGAGGGAGGGGCAGGTGCCGGGGAGATGACGGAGAG
GGATGGGAGGGAAGAGATGTTGTTAAGGGAGGGCATCAAGGCACTTGATG
TGAGGATAGGGGAGGTAAAGGGTCGGATCAATGAGATCTTGGAAGAGTTG
AGGTATGAGGTAGAGGAGGAGTAGCTGTGAGTAAAGAAGAAAAAGATAAA
TAGAGGACAAGGCAGGCAC
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Coding sequence (CDS) from alignment at scaffold_16:258501..259369+

>mRNA_7085 ID=mRNA_7085|Name=jgi.p|Nanoce1779_2|595563|organism=Nannochloropsis oceanica|type=CDS|length=789bp|location=Sequence derived from alignment at scaffold_16:258501..259369+ (Nannochloropsis oceanica)
ATGGATTTGAAGCAGTGTCTGGCCATCCTATCAGGGCGGGGCGTCTGCGA
GCATGGCAGTCACGAGCACAATCAACCCCACACGTCAACAGCATCATCCA
AGACGACGGAACCTTTGGGGCAAGTCATTGACTTGCTGTCGTCCGTTCCT
CCAAGTTCAGGTACCAGCAACGACAAGGTGGACAAGGACAACGCTGATCA
AGCAGCAGCAGCGCTGTCCACCGAGGCTCGGGCGCAGGCGAGCGTGGCAA
AATTGCGGGAGGGACTCGCGGGGTTGGACGTGCAGGGCCTCATAAGAGCC
TTTCGACAAGCTCAAGAAGAACGCGCGCAGGCATACCAGCGATTCGATGA
GGGTTTGAACAAGGTGCTGGCTTCCCGGGCGTTTGCTGAATATGATGGGT
TGTGTGCCGAGGCGACGGCGGGGTTTGCAGCTTTGAGTAACCTGGTCAAT
GCCGTGGAGCATTGCCTAGGGGCAGCCCCCCATGAGCGGAAGGTGTTGGC
TGGGCTTCTCCGACGGGTGCAGACGGAGGAAAAAGAGAAATTGTCCTTGA
CGGCGGCGTTACACTTGGAAACATTTCGGCTCGCAACGGCGGTGGCGGGG
ACGACACCGATGGGGGGAGTGTCTGATGGTGAGGGAGGGGCAGGTGCCGG
GGAGATGACGGAGAGGGATGGGAGGGAAGAGATGTTGTTAAGGGAGGGCA
TCAAGGCACTTGATGTGAGGATAGGGGAGGTAAAGGGTCGGATCAATGAG
ATCTTGGAAGAGTTGAGGTATGAGGTAGAGGAGGAGTAG
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Synonyms
Publications