jgi.p|Nanoce1779_2|595558, mRNA_7084 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595558
Unique NamemRNA_7084
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1267
Alignment locationscaffold_16:257087..258353 -

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Properties
Property NameValue
TranscriptId595644
TrackFilteredModels2
ProteinId595558
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:257087..258353 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595558gene_7084Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595558mRNA_7084-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7084CDS_7084Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7084 ID=mRNA_7084|Name=jgi.p|Nanoce1779_2|595558|organism=Nannochloropsis oceanica|type=mRNA|length=1267bp
AGCCAGAAATCGCATTTTTGCCAGCATGTCATCGCCCTCTCCTTCCTCCT
CCTTGTCGGCCGCATCCCAAGCCTTTCTGGCCCAGTTTTTCCCTCCCACA
GCCCCGCTCCAACGCGACATTCCCATCGACCTCGGCCGGGTCAACATGGA
GACGGCCACCCGTAAATTTGGGGGTCCCTTGCCCAGTGTCCGCCGCATCG
ACAATCTGAGCGTGCCTTGCTTGGGTGATTTGAGCGCGGACGTTAAGATA
AGGGTGTATTGGCCTTTGGTGGAGCAGGAGAAGAAGCTGCCTGTGGTTCT
GTACGCGCACGGCGGCGGGTGGGTGAAAGGCAACCTGAACACACACGACA
ATCTATGTCGGCGCTTGGCCATAGGCTCAGGACAGGTGGTCGTTGCGGTA
GATTATCGACTTAGCCCTGAAAGTCGGTATCCTGATGCATTGGACGACTT
GGAGGCGGCATTCAAATGGGTGGGAGGACAACCAACACTCGACTCCACGC
AAGTGACGGTGGCAGGGGACAGTGCCGGGGGGAATCTAGTCAGTGCTTTG
GTGGTGAGACTGCTCACTAAAAAGGATGGAGAGGTCAAACCGGACCATCA
GGTGAAGAGACAGGTGTTGATTTACCCGATTGTGGACATGCGGATGGAGG
GCGAGAGTTATGAAAAGTATGGGGCAGGTTTTGGGTTGTCCGAGGTTTCG
ATCCAATATTACATTGAGATGTACCTGGGCCGTAGTTACACGGATGCATT
GGTGACGAATCCAGAGGTGTCTCCCATCTTGTTTGGACAGCCTGAAATGA
TGCCGACGACGATGATAGTGACGGCGGAATGTGACCCACTCGCGAGCGAG
GCGGGTGCGTTACGGGAGCGATTGGAGGCGGCAGGGGTGAGTGTGAAGCA
CGTGGTGTATCCGGGGACAGTGCATGCTTATTTGACGTATTTTGATTTGT
TTCCCGAGTCAGAAATAAGTGTGGAAGAGATCGTGGGGTGGTTGAAAAAA
GAGACCTTGGCGGTAGGGGTGCAGGGAGGGGTGTGAGTGGGTGATCGAGG
GATGGAATGATAGGTGGAAGCGTCTGTCGTTAAGATTACTAAAGGGTGGG
TGTAAAATTCTGTGCGGGTTGGGCGATGTTGTATCTAGATGTAATGGAGG
AGGGGAGGGAAAGGTGCTCAGGCACATAAAACAAAACGAGGACCAGATCG
AGAAAGAGGGAAGGAAGAAAATGAAAAAAGCAGAGATGAATGATAAGATA
TAAGGGAGAGGAAAATT
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protein sequence of jgi.p|Nanoce1779_2|595558

>mRNA_7084-protein ID=mRNA_7084-protein|Name=jgi.p|Nanoce1779_2|595558|organism=Nannochloropsis oceanica|type=polypeptide|length=337bp
MSSPSPSSSLSAASQAFLAQFFPPTAPLQRDIPIDLGRVNMETATRKFGG
PLPSVRRIDNLSVPCLGDLSADVKIRVYWPLVEQEKKLPVVLYAHGGGWV
KGNLNTHDNLCRRLAIGSGQVVVAVDYRLSPESRYPDALDDLEAAFKWVG
GQPTLDSTQVTVAGDSAGGNLVSALVVRLLTKKDGEVKPDHQVKRQVLIY
PIVDMRMEGESYEKYGAGFGLSEVSIQYYIEMYLGRSYTDALVTNPEVSP
ILFGQPEMMPTTMIVTAECDPLASEAGALRERLEAAGVSVKHVVYPGTVH
AYLTYFDLFPESEISVEEIVGWLKKETLAVGVQGGV*
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mRNA from alignment at scaffold_16:257087..258353-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7084 ID=mRNA_7084|Name=jgi.p|Nanoce1779_2|595558|organism=Nannochloropsis oceanica|type=mRNA|length=1267bp|location=Sequence derived from alignment at scaffold_16:257087..258353- (Nannochloropsis oceanica)
AGCCAGAAATCGCATTTTTGCCAGCATGTCATCGCCCTCTCCTTCCTCCT
CCTTGTCGGCCGCATCCCAAGCCTTTCTGGCCCAGTTTTTCCCTCCCACA
GCCCCGCTCCAACGCGACATTCCCATCGACCTCGGCCGGGTCAACATGGA
GACGGCCACCCGTAAATTTGGGGGTCCCTTGCCCAGTGTCCGCCGCATCG
ACAATCTGAGCGTGCCTTGCTTGGGTGATTTGAGCGCGGACGTTAAGATA
AGGGTGTATTGGCCTTTGGTGGAGCAGGAGAAGAAGCTGCCTGTGGTTCT
GTACGCGCACGGCGGCGGGTGGGTGAAAGGCAACCTGAACACACACGACA
ATCTATGTCGGCGCTTGGCCATAGGCTCAGGACAGGTGGTCGTTGCGGTA
GATTATCGACTTAGCCCTGAAAGTCGGTATCCTGATGCATTGGACGACTT
GGAGGCGGCATTCAAATGGGTGGGAGGACAACCAACACTCGACTCCACGC
AAGTGACGGTGGCAGGGGACAGTGCCGGGGGGAATCTAGTCAGTGCTTTG
GTGGTGAGACTGCTCACTAAAAAGGATGGAGAGGTCAAACCGGACCATCA
GGTGAAGAGACAGGTGTTGATTTACCCGATTGTGGACATGCGGATGGAGG
GCGAGAGTTATGAAAAGTATGGGGCAGGTTTTGGGTTGTCCGAGGTTTCG
ATCCAATATTACATTGAGATGTACCTGGGCCGTAGTTACACGGATGCATT
GGTGACGAATCCAGAGGTGTCTCCCATCTTGTTTGGACAGCCTGAAATGA
TGCCGACGACGATGATAGTGACGGCGGAATGTGACCCACTCGCGAGCGAG
GCGGGTGCGTTACGGGAGCGATTGGAGGCGGCAGGGGTGAGTGTGAAGCA
CGTGGTGTATCCGGGGACAGTGCATGCTTATTTGACGTATTTTGATTTGT
TTCCCGAGTCAGAAATAAGTGTGGAAGAGATCGTGGGGTGGTTGAAAAAA
GAGACCTTGGCGGTAGGGGTGCAGGGAGGGGTGTGAGTGGGTGATCGAGG
GATGGAATGATAGGTGGAAGCGTCTGTCGTTAAGATTACTAAAGGGTGGG
TGTAAAATTCTGTGCGGGTTGGGCGATGTTGTATCTAGATGTAATGGAGG
AGGGGAGGGAAAGGTGCTCAGGCACATAAAACAAAACGAGGACCAGATCG
AGAAAGAGGGAAGGAAGAAAATGAAAAAAGCAGAGATGAATGATAAGATA
TAAGGGAGAGGAAAATT
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Coding sequence (CDS) from alignment at scaffold_16:257087..258353-

>mRNA_7084 ID=mRNA_7084|Name=jgi.p|Nanoce1779_2|595558|organism=Nannochloropsis oceanica|type=CDS|length=1011bp|location=Sequence derived from alignment at scaffold_16:257087..258353- (Nannochloropsis oceanica)
ATGTCATCGCCCTCTCCTTCCTCCTCCTTGTCGGCCGCATCCCAAGCCTT
TCTGGCCCAGTTTTTCCCTCCCACAGCCCCGCTCCAACGCGACATTCCCA
TCGACCTCGGCCGGGTCAACATGGAGACGGCCACCCGTAAATTTGGGGGT
CCCTTGCCCAGTGTCCGCCGCATCGACAATCTGAGCGTGCCTTGCTTGGG
TGATTTGAGCGCGGACGTTAAGATAAGGGTGTATTGGCCTTTGGTGGAGC
AGGAGAAGAAGCTGCCTGTGGTTCTGTACGCGCACGGCGGCGGGTGGGTG
AAAGGCAACCTGAACACACACGACAATCTATGTCGGCGCTTGGCCATAGG
CTCAGGACAGGTGGTCGTTGCGGTAGATTATCGACTTAGCCCTGAAAGTC
GGTATCCTGATGCATTGGACGACTTGGAGGCGGCATTCAAATGGGTGGGA
GGACAACCAACACTCGACTCCACGCAAGTGACGGTGGCAGGGGACAGTGC
CGGGGGGAATCTAGTCAGTGCTTTGGTGGTGAGACTGCTCACTAAAAAGG
ATGGAGAGGTCAAACCGGACCATCAGGTGAAGAGACAGGTGTTGATTTAC
CCGATTGTGGACATGCGGATGGAGGGCGAGAGTTATGAAAAGTATGGGGC
AGGTTTTGGGTTGTCCGAGGTTTCGATCCAATATTACATTGAGATGTACC
TGGGCCGTAGTTACACGGATGCATTGGTGACGAATCCAGAGGTGTCTCCC
ATCTTGTTTGGACAGCCTGAAATGATGCCGACGACGATGATAGTGACGGC
GGAATGTGACCCACTCGCGAGCGAGGCGGGTGCGTTACGGGAGCGATTGG
AGGCGGCAGGGGTGAGTGTGAAGCACGTGGTGTATCCGGGGACAGTGCAT
GCTTATTTGACGTATTTTGATTTGTTTCCCGAGTCAGAAATAAGTGTGGA
AGAGATCGTGGGGTGGTTGAAAAAAGAGACCTTGGCGGTAGGGGTGCAGG
GAGGGGTGTGA
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Synonyms
Publications