jgi.p|Nanoce1779_2|595553, mRNA_7083 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595553
Unique NamemRNA_7083
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1430
Alignment locationscaffold_16:255555..256984 +

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Properties
Property NameValue
TranscriptId595639
TrackFilteredModels2
ProteinId595553
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:255555..256984 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595553gene_7083Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595553mRNA_7083-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7083CDS_7083Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7083 ID=mRNA_7083|Name=jgi.p|Nanoce1779_2|595553|organism=Nannochloropsis oceanica|type=mRNA|length=1430bp
GTTCCCCACATCATTGTTGGGCCCGGTCCATTTTTTCCACGCCCTCAAAT
GCAACGCAACTGTCCACATACACACAGACAAGCCCCATGTGATCGTGGCC
TGCGATCTCGATCATCTGCATACCCAAGATTCCATTATAGGAACGCGCTG
CAAGAGGCGTCAAGCCAAACAAAGCGGCGGCTTGTTGGCGCGTGCGTCTC
CTCTAGCCTCCCCTCCTGTCTCCTTCTGAAGCCCGCAATAAAACCAATAC
CAACATCCCAAACCACAAACACAGTAAGCAAATCAATAGCATGGAAGATT
TGCTGGGGATTTACGCATCGGACGAGGACGAGGATGACGATCACGAGGAC
AAGCGCCAAGAGAGGCAGCAGATGACTTCCCACCCGTCCTCTATTTCTCC
ACCACGCCAACCCACTTCCTCGTCATCCCTCCTCCGCACCCAACAACTCC
ATGCCAGTTTGAAAACAGATTCAACACGAAAGCGTGCACTTGATTCCTAT
TCTTCGGGTTTGCCCTCCCCCGATCCCGGCTACTTCCACGTCTCAGCCGA
GAACGTGTATACCACCGTTTTGACCAACGGGCAACGGCGTGGGCTCCCGT
CCAACACCACAAGCAGCAAAAAGAACAAGAAAGTCAAACCTTTGTATACG
GTCGGGGCAGAATGGGTACGAAGTGTCCCCCATTTCGAGGGGAATTGGGC
AACGCATGTCTATATCCGCGTGCCTAACACCAAGGAAGTGGTGAGATTAG
CACAAGCTTGTGTGGAGAAAGGCAGGAAGCATTTGCGGAAGATATTGACG
GAGTGTAAGAAGAAGGGGGAGAGTAAGGTGGGGGAACTGGTAGCGAATGA
TTTGACGCTTGAGGAAAGCGAAGACGAGGACGAGGATGAGGAGGGGGAGG
AGGAGCAGAAGAGAGGAGAGAGGGGGCAGCACCTCAGTTTATCTCGGACA
GTCTACCTTCGTTCTCATCACATCGAACCTTTTGTGACAGATCTACGTAC
AGCCTTGTCATGGGCCAGAGCGTTTACTGTCCGATTCGGAGGAGGGAGAG
ATGGAGGAAGAGGAGGAGTGCTGTTGGTCAATGACGAGCGGACTCGGTCG
TTTCTGACCGTGCCGATAGTTAAAGGGGGGGAGGAACGGCTAATTAGGTT
GGTGAGAAGCGTGGACGAGGTGTTGAAAAGGTATAGACAGCCAGTGTATT
ACAAGGAGCCTTTGTTTCACCTGTCTGTGGCGTCGATGAGGGGGGATGTG
GAAGACGCATGGAGAGATGGAGAGGCGAAGGACGAGGGAGAGGAAGAGAA
TGTGGAGACGGAGGGCACTGCGGTGTATGTGAATAGGGTAGAATGCCGGA
TCGGACAAAAGCTGTTCGGGATTCCTTTGAGAGAGGACTGACGGAGGGAA
GGAAGAAAGGAAGCTGGGAGCAATAGAGGG
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protein sequence of jgi.p|Nanoce1779_2|595553

>mRNA_7083-protein ID=mRNA_7083-protein|Name=jgi.p|Nanoce1779_2|595553|organism=Nannochloropsis oceanica|type=polypeptide|length=367bp
MEDLLGIYASDEDEDDDHEDKRQERQQMTSHPSSISPPRQPTSSSSLLRT
QQLHASLKTDSTRKRALDSYSSGLPSPDPGYFHVSAENVYTTVLTNGQRR
GLPSNTTSSKKNKKVKPLYTVGAEWVRSVPHFEGNWATHVYIRVPNTKEV
VRLAQACVEKGRKHLRKILTECKKKGESKVGELVANDLTLEESEDEDEDE
EGEEEQKRGERGQHLSLSRTVYLRSHHIEPFVTDLRTALSWARAFTVRFG
GGRDGGRGGVLLVNDERTRSFLTVPIVKGGEERLIRLVRSVDEVLKRYRQ
PVYYKEPLFHLSVASMRGDVEDAWRDGEAKDEGEEENVETEGTAVYVNRV
ECRIGQKLFGIPLRED*
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mRNA from alignment at scaffold_16:255555..256984+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7083 ID=mRNA_7083|Name=jgi.p|Nanoce1779_2|595553|organism=Nannochloropsis oceanica|type=mRNA|length=1430bp|location=Sequence derived from alignment at scaffold_16:255555..256984+ (Nannochloropsis oceanica)
GTTCCCCACATCATTGTTGGGCCCGGTCCATTTTTTCCACGCCCTCAAAT
GCAACGCAACTGTCCACATACACACAGACAAGCCCCATGTGATCGTGGCC
TGCGATCTCGATCATCTGCATACCCAAGATTCCATTATAGGAACGCGCTG
CAAGAGGCGTCAAGCCAAACAAAGCGGCGGCTTGTTGGCGCGTGCGTCTC
CTCTAGCCTCCCCTCCTGTCTCCTTCTGAAGCCCGCAATAAAACCAATAC
CAACATCCCAAACCACAAACACAGTAAGCAAATCAATAGCATGGAAGATT
TGCTGGGGATTTACGCATCGGACGAGGACGAGGATGACGATCACGAGGAC
AAGCGCCAAGAGAGGCAGCAGATGACTTCCCACCCGTCCTCTATTTCTCC
ACCACGCCAACCCACTTCCTCGTCATCCCTCCTCCGCACCCAACAACTCC
ATGCCAGTTTGAAAACAGATTCAACACGAAAGCGTGCACTTGATTCCTAT
TCTTCGGGTTTGCCCTCCCCCGATCCCGGCTACTTCCACGTCTCAGCCGA
GAACGTGTATACCACCGTTTTGACCAACGGGCAACGGCGTGGGCTCCCGT
CCAACACCACAAGCAGCAAAAAGAACAAGAAAGTCAAACCTTTGTATACG
GTCGGGGCAGAATGGGTACGAAGTGTCCCCCATTTCGAGGGGAATTGGGC
AACGCATGTCTATATCCGCGTGCCTAACACCAAGGAAGTGGTGAGATTAG
CACAAGCTTGTGTGGAGAAAGGCAGGAAGCATTTGCGGAAGATATTGACG
GAGTGTAAGAAGAAGGGGGAGAGTAAGGTGGGGGAACTGGTAGCGAATGA
TTTGACGCTTGAGGAAAGCGAAGACGAGGACGAGGATGAGGAGGGGGAGG
AGGAGCAGAAGAGAGGAGAGAGGGGGCAGCACCTCAGTTTATCTCGGACA
GTCTACCTTCGTTCTCATCACATCGAACCTTTTGTGACAGATCTACGTAC
AGCCTTGTCATGGGCCAGAGCGTTTACTGTCCGATTCGGAGGAGGGAGAG
ATGGAGGAAGAGGAGGAGTGCTGTTGGTCAATGACGAGCGGACTCGGTCG
TTTCTGACCGTGCCGATAGTTAAAGGGGGGGAGGAACGGCTAATTAGGTT
GGTGAGAAGCGTGGACGAGGTGTTGAAAAGGTATAGACAGCCAGTGTATT
ACAAGGAGCCTTTGTTTCACCTGTCTGTGGCGTCGATGAGGGGGGATGTG
GAAGACGCATGGAGAGATGGAGAGGCGAAGGACGAGGGAGAGGAAGAGAA
TGTGGAGACGGAGGGCACTGCGGTGTATGTGAATAGGGTAGAATGCCGGA
TCGGACAAAAGCTGTTCGGGATTCCTTTGAGAGAGGACTGACGGAGGGAA
GGAAGAAAGGAAGCTGGGAGCAATAGAGGG
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Coding sequence (CDS) from alignment at scaffold_16:255555..256984+

>mRNA_7083 ID=mRNA_7083|Name=jgi.p|Nanoce1779_2|595553|organism=Nannochloropsis oceanica|type=CDS|length=1101bp|location=Sequence derived from alignment at scaffold_16:255555..256984+ (Nannochloropsis oceanica)
ATGGAAGATTTGCTGGGGATTTACGCATCGGACGAGGACGAGGATGACGA
TCACGAGGACAAGCGCCAAGAGAGGCAGCAGATGACTTCCCACCCGTCCT
CTATTTCTCCACCACGCCAACCCACTTCCTCGTCATCCCTCCTCCGCACC
CAACAACTCCATGCCAGTTTGAAAACAGATTCAACACGAAAGCGTGCACT
TGATTCCTATTCTTCGGGTTTGCCCTCCCCCGATCCCGGCTACTTCCACG
TCTCAGCCGAGAACGTGTATACCACCGTTTTGACCAACGGGCAACGGCGT
GGGCTCCCGTCCAACACCACAAGCAGCAAAAAGAACAAGAAAGTCAAACC
TTTGTATACGGTCGGGGCAGAATGGGTACGAAGTGTCCCCCATTTCGAGG
GGAATTGGGCAACGCATGTCTATATCCGCGTGCCTAACACCAAGGAAGTG
GTGAGATTAGCACAAGCTTGTGTGGAGAAAGGCAGGAAGCATTTGCGGAA
GATATTGACGGAGTGTAAGAAGAAGGGGGAGAGTAAGGTGGGGGAACTGG
TAGCGAATGATTTGACGCTTGAGGAAAGCGAAGACGAGGACGAGGATGAG
GAGGGGGAGGAGGAGCAGAAGAGAGGAGAGAGGGGGCAGCACCTCAGTTT
ATCTCGGACAGTCTACCTTCGTTCTCATCACATCGAACCTTTTGTGACAG
ATCTACGTACAGCCTTGTCATGGGCCAGAGCGTTTACTGTCCGATTCGGA
GGAGGGAGAGATGGAGGAAGAGGAGGAGTGCTGTTGGTCAATGACGAGCG
GACTCGGTCGTTTCTGACCGTGCCGATAGTTAAAGGGGGGGAGGAACGGC
TAATTAGGTTGGTGAGAAGCGTGGACGAGGTGTTGAAAAGGTATAGACAG
CCAGTGTATTACAAGGAGCCTTTGTTTCACCTGTCTGTGGCGTCGATGAG
GGGGGATGTGGAAGACGCATGGAGAGATGGAGAGGCGAAGGACGAGGGAG
AGGAAGAGAATGTGGAGACGGAGGGCACTGCGGTGTATGTGAATAGGGTA
GAATGCCGGATCGGACAAAAGCTGTTCGGGATTCCTTTGAGAGAGGACTG
A
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Synonyms
Publications