jgi.p|Nanoce1779_2|573862, mRNA_708 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573862
Unique NamemRNA_708
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1093
Alignment locationscaffold_2:244519..245822 +

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Properties
Property NameValue
TranscriptId573948
TrackFilteredModels2
ProteinId573862
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:244519..245822 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573862gene_708Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573862mRNA_708-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_708CDS_708Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_708 ID=mRNA_708|Name=jgi.p|Nanoce1779_2|573862|organism=Nannochloropsis oceanica|type=mRNA|length=1093bp
CAGACCACGACGACGCTATGAACGACCGCTTGACAGAACTTCGGGCTAAG
GGCGGCGGCGGGACCGGGAGCATGCCTTCCGATAGCGTGGGCATCGACAT
GACAAATCTGCATGGAGGCCCAGCAGCCGCGGCTGCCACCGGTGCGGCCG
GCTCAACTCAGCCTCAATTCATGAACGAGTTTTTCACGGACGTGGAGGCG
ACGAAGGAGGACATTAATGCCATCAAAGAAGCGATTCGGCGCATGAACAC
TATCCATCAAGAGGCGTTTTTGGCCACCACGGGCCCGAAGGAAGCAAAGC
TAAGCCATGAACTCAATGCGGTCATTCAAGAGACCAATCCGAAAGCCGCG
CGTGCCAAGGACATGCTCAACCAGATGAAGGATGAGACGACCAAATTGCG
GCAAGACACCAGATGTAACCCCTCCCAGCTTCGGATACGCGACAATCTGA
CCAATACACTCACTCGTAAATTTGTGGATGTGATGAAGGACTACCAGAAT
GCCCAAACCAAATACAAAGCCTTCATCAAAAATAAAGTCCAACGGCAGGT
TCAGATCGTCAAGCCCGACGCCTCGCCCGAGGAGATCGAGGCAGTATTCA
AGTCGGGGGGAGGGGCAGATGAGGTGATAACTCAAGCAATTCTGAAGGGT
GCAAACGAGAGCATTCGAAGCGTGTATCAGAATGTGGCTGACAAGTACCA
AGACGTCTTGACCTTGGAAGCGAGTATTGCGGAGCTGCACCAGATGTTTT
TGGATTTTGCGTTGTTGGTGGAGCAGCAGGGAGAGTTGCTTGATCAGATT
GAGTATCAGGTCAAGGGGGCTGCAAATTATGTGGAAGACGGGACGTTGCA
GGTACAAGGAGCAATCGAGAGTGCGAAAAAGGCGCGGAAGTACCAGTGTT
GTATGCTCGTCTGTGTGATGGTGTTGGTGGGTATACTAGTCTTGGTCCTT
TTTGTTTTCAGGAAGCAAGTGGGTGTGTAAGAGGAGAGTAAAAGCAAAGA
GGAATTACTGATGATGTCCGGCGGTCGACGACGAGAGGCATGCACGCACA
CAAAATATGAATGTTAAAACTCTGTAGAAGCCGATGAAGCGAT
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protein sequence of jgi.p|Nanoce1779_2|573862

>mRNA_708-protein ID=mRNA_708-protein|Name=jgi.p|Nanoce1779_2|573862|organism=Nannochloropsis oceanica|type=polypeptide|length=321bp
MNDRLTELRAKGGGGTGSMPSDSVGIDMTNLHGGPAAAAATGAAGSTQPQ
FMNEFFTDVEATKEDINAIKEAIRRMNTIHQEAFLATTGPKEAKLSHELN
AVIQETNPKAARAKDMLNQMKDETTKLRQDTRCNPSQLRIRDNLTNTLTR
KFVDVMKDYQNAQTKYKAFIKNKVQRQVQIVKPDASPEEIEAVFKSGGGA
DEVITQAILKGANESIRSVYQNVADKYQDVLTLEASIAELHQMFLDFALL
VEQQGELLDQIEYQVKGAANYVEDGTLQVQGAIESAKKARKYQCCMLVCV
MVLVGILVLVLFVFRKQVGV*
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mRNA from alignment at scaffold_2:244519..245822+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_708 ID=mRNA_708|Name=jgi.p|Nanoce1779_2|573862|organism=Nannochloropsis oceanica|type=mRNA|length=1304bp|location=Sequence derived from alignment at scaffold_2:244519..245822+ (Nannochloropsis oceanica)
CAGACCACGACGACGCTATGAACGACCGCTTGACAGAACTTCGGGCTAAG
GGCGGCGGCGGGACCGGGAGCATGCCTTCCGATAGCGTGGGCATCGACAT
GACAAATCTGCATGGAGGCCCAGCAGCCGCGGCTGCCACCGGTGCGGCCG
GCTCAACTCAGCCTCAATTCATGAACGAGTTTTTCACGGACGTGGAGGCG
ACGAAGGAGGACATTAATGCCATCAAAGAAGCGATTCGGCGCATGAACAC
TATCCATCAAGAGGCGTTTTTGGCCACCACGGGCCCGAAGGAAGCAAAGC
TAAGCCATGAACTCAATGCGGTCATTCAAGAGACCAATCCGAAAGCCGCG
CGTGCCAAGGACATGCTCAACCAGATGAAGGATGAGACGACCAAATTGCG
GCAAGACACCAGATGTAACCCCTCCCAGCTTCGGATACGCGACAATCTGA
CCAATACACTCACTCGTAAATTTGTGGATGTGATGAAGGACTACCAGAAT
GCCCAAACCAAATACAAAGCCTTCATCAAAAATAAAGTCCAACGGCAGGT
TCAGATCGTCAAGCCCGACGCCTCGCCCGAGGAGATCGAGGCAGTATTCA
AGTCGGGGGGAGGGGCAGATGAGGTGATAACTCAAGCAATTCTGAAGGGT
GCAAACGAGAGCATTCGAAGCGTGTATCAGAATGTGGCTGACAAGTACCA
AGACGTCTTGACCTTGGAAGCGAGTATTGCGGAGCTGCACCAGATGTTTT
TGGATTTTGCGTTGTTGGTGGAGCAGCAGGGAGAGTTGCTTGATCAGATT
GAGTATCAGGTCAAGGGGGCTGCAAATTATGTGGAAGACGGGACGTTGCA
GGTACAAGGAGCAATCGAGAGTGCGAAAAAGGTATGTCAACGAGGGGTGT
ATTTGGGTCGGATGCGAAGAGTGGTGTGTGGAATGATAATGGACGGGATG
GGGATTTTAGTTGGGGTTTACGTGGTTGTTAATAGGGCAAGGTGTCGGCA
CTTACTGTTTTTCCTCACTTAAGTGTTGCTTTGTCTCTATTGTCTCTAAC
TCGCTCTGATCCCCTCGTCTTCTCTCAACTCACAACCCACAGGCGCGGAA
GTACCAGTGTTGTATGCTCGTCTGTGTGATGGTGTTGGTGGGTATACTAG
TCTTGGTCCTTTTTGTTTTCAGGAAGCAAGTGGGTGTGTAAGAGGAGAGT
AAAAGCAAAGAGGAATTACTGATGATGTCCGGCGGTCGACGACGAGAGGC
ATGCACGCACACAAAATATGAATGTTAAAACTCTGTAGAAGCCGATGAAG
CGAT
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Coding sequence (CDS) from alignment at scaffold_2:244519..245822+

>mRNA_708 ID=mRNA_708|Name=jgi.p|Nanoce1779_2|573862|organism=Nannochloropsis oceanica|type=CDS|length=1926bp|location=Sequence derived from alignment at scaffold_2:244519..245822+ (Nannochloropsis oceanica)
ATGAACGACCGCTTGACAGAACTTCGGGCTAAGGGCGGCGGCGGGACCGG
GAGCATGCCTTCCGATAGCGTGGGCATCGACATGACAAATCTGCATGGAG
GCCCAGCAGCCGCGGCTGCCACCGGTGCGGCCGGCTCAACTCAGCCTCAA
TTCATGAACGAGTTTTTCACGGACGTGGAGGCGACGAAGGAGGACATTAA
TGCCATCAAAGAAGCGATTCGGCGCATGAACACTATCCATCAAGAGGCGT
TTTTGGCCACCACGGGCCCGAAGGAAGCAAAGCTAAGCCATGAACTCAAT
GCGGTCATTCAAGAGACCAATCCGAAAGCCGCGCGTGCCAAGGACATGCT
CAACCAGATGAAGGATGAGACGACCAAATTGCGGCAAGACACCAGATGTA
ACCCCTCCCAGCTTCGGATACGCGACAATCTGACCAATACACTCACTCGT
AAATTTGTGGATGTGATGAAGGACTACCAGAATGCCCAAACCAAATACAA
AGCCTTCATCAAAAATAAAGTCCAACGGCAGGTTCAGATCGTCAAGCCCG
ACGCCTCGCCCGAGGAGATCGAGGCAGTATTCAAGTCGGGGGGAGGGGCA
GATGAGGTGATAACTCAAGCAATTCTGAAGGGTGCAAACGAGAGCATTCG
AAGCGTGTATCAGAATGTGGCTGACAAGTACCAAGACGTCTTGACCTTGG
AAGCGAGTATTGCGGAGCTGCACCAGATGTTTTTGGATTTTGCGTTGTTG
GTGGAGCAGCAGGGAGAGTTGCTTGATCAGATTGAGTATCAGGTCAAGGG
GGCTGCAAATTATGTGGAAGACGGGACGTTGCAGGTACAAGGAGCAATCG
AGAGTGCGAAAAAGGCGCGGAAGTACCAGTGTTGTATGCTCGTCTGTGTG
ATGGTGTTGGTGGGTATACTAGTCTTGGTCCTTTTTGTTTTCAGGAAGCA
AGTGGGTGTGTAAATGAACGACCGCTTGACAGAACTTCGGGCTAAGGGCG
GCGGCGGGACCGGGAGCATGCCTTCCGATAGCGTGGGCATCGACATGACA
AATCTGCATGGAGGCCCAGCAGCCGCGGCTGCCACCGGTGCGGCCGGCTC
AACTCAGCCTCAATTCATGAACGAGTTTTTCACGGACGTGGAGGCGACGA
AGGAGGACATTAATGCCATCAAAGAAGCGATTCGGCGCATGAACACTATC
CATCAAGAGGCGTTTTTGGCCACCACGGGCCCGAAGGAAGCAAAGCTAAG
CCATGAACTCAATGCGGTCATTCAAGAGACCAATCCGAAAGCCGCGCGTG
CCAAGGACATGCTCAACCAGATGAAGGATGAGACGACCAAATTGCGGCAA
GACACCAGATGTAACCCCTCCCAGCTTCGGATACGCGACAATCTGACCAA
TACACTCACTCGTAAATTTGTGGATGTGATGAAGGACTACCAGAATGCCC
AAACCAAATACAAAGCCTTCATCAAAAATAAAGTCCAACGGCAGGTTCAG
ATCGTCAAGCCCGACGCCTCGCCCGAGGAGATCGAGGCAGTATTCAAGTC
GGGGGGAGGGGCAGATGAGGTGATAACTCAAGCAATTCTGAAGGGTGCAA
ACGAGAGCATTCGAAGCGTGTATCAGAATGTGGCTGACAAGTACCAAGAC
GTCTTGACCTTGGAAGCGAGTATTGCGGAGCTGCACCAGATGTTTTTGGA
TTTTGCGTTGTTGGTGGAGCAGCAGGGAGAGTTGCTTGATCAGATTGAGT
ATCAGGTCAAGGGGGCTGCAAATTATGTGGAAGACGGGACGTTGCAGGTA
CAAGGAGCAATCGAGAGTGCGAAAAAGGCGCGGAAGTACCAGTGTTGTAT
GCTCGTCTGTGTGATGGTGTTGGTGGGTATACTAGTCTTGGTCCTTTTTG
TTTTCAGGAAGCAAGTGGGTGTGTAA
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Synonyms
Publications