jgi.p|Nanoce1779_2|101969, mRNA_7079 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|101969
Unique Name	mRNA_7079
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1740
Alignment location	scaffold_16:245311..247050 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	102055
Track	FilteredModels2
ProteinId	101969

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_16	supercontig	scaffold_16:245311..247050 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|101969	gene_7079	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|101969	mRNA_7079-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7079	CDS_7079	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_16:245311..247050+
coding sequence from alignment at scaffold_16:245311..247050+

mRNA sequence

>mRNA_7079 ID=mRNA_7079|Name=jgi.p|Nanoce1779_2|101969|organism=Nannochloropsis oceanica|type=mRNA|length=1740bp
CCTCCTCCCCTGGCTACCCCAATCACACAGGATAAGCAGCAGTAGTGGCA
GCAGCTGTGGCCGATGCTCTCCCCCATTGCCGAGTCCCCACAGAAGGAGC
GGGCAGCGGAGCAAGACGAGGAAGAGGGAATAACAGCGACTGTGCGAGCG
CGTGCACAACATAAATATGAACTCCAAGCAAACGATGAGGAGGACGAGGG
GAAGGACGAGGGAGAAGAAGAGGAGGATCGGTTGTTAAACGTTTACTCCA
GAAGAAGATGGAGCCGGTTGGAGACGGTAACTAGAGGAAGGGAGGGAGGA
AGGGATTGAGGGGCAGAACTGTGTGTCCATGCCCCTTTGAAATATGTTCT
TTTTACTTCTAAAACCAATGAGGAGGGTACAGTTTATTTCACGTGGCTGC
TCTAAAAAACGCAGCAATGTTTATTTCCCTGTTATTCCTCTTTCCTCTTC
TCCCCCATTCCTCCACACTTTATAGATGGAAATTGAGAGCGGTCGCAAGA
CACCCACAAGAGGTCCTGGCACCCGCTCCACCTCCTCCTATAGAAGCCTC
GGCACGCAGGACTCTTCCTCTTTCGGCGCATCGCCAGGAGAAGCAGCAAC
AGCAGGAGCGGGAGGAGGAGGGGGAGCAGCAGCAGCAGCAGGAGCGACGC
ACAACCCTCCGCGTTTTCCCTCCTCCTCTTCTTCCTCCACTTATTCCTCG
GGCGCGGCGAGATGGAGAAGCCCATTGAATATTTTGGTGTCGACCAGGAA
TGTTATGAGCCAGATAATGACCTTCTCGAGGGGAGGGATGGAGTGTCCGT
TGCCTTTCTTGTGCGACGAGGACCATCCCGATCCATGTGTAAGTAATGAA
GTAATTGTATGATTAATGTGAAGGGTGTCAAAGAATGAATGCAGATATGT
CCGTTTGTCGACGATTTCGTCTGCCAACTCAACCCCAACCTCATCACGTG
TCTTGGCTCTCTCCTCCCCTCGCTCCCTCACTCGCTTCCTTCCTCTCGCC
CCCACAGGAATGCCTCTGCAATCTCATACAGATGCCCCGCGTCCCCGCCG
CCCGCCATCACTACCTCATCTATCGCTCACCAGCTCCTATCGCCTATTCC
TCCTCCTCCCTTCCTTCTTCGTCCTCGTCAAGAAATGAGCGAATTTATAC
GATTGGCCCGCATTGGGCAGGTCTTGTTTTTACCATATTTTTGGTCTGTC
TGGCTTCGTATTTGTTCATCACCCACGTCGCTCTCGAGCTTGGCTCGATC
TTCGTAGGTATTGCATGTGTGTACACATTCCTGACTTTGGCGACGCTCTT
AAGAACTGCCTGTCTGGACCCCGGGTTTATCACTCGCTCGGTTCCTCCCT
CCCTCCCTCGTCGTAAATTCTGCCAGGTGTGTCGGTTGTACACAGGACCT
ACCGCCCAGCACTGCGAGGACTGCAAAGTGTGCATAGAAGGGCTGGATCA
TCACTGCCCGTGGATGGGACACTGTGTGGGGAAGGGGAATCTAGGCGCGT
TTTTGTGTTTCAATTGCGTGTGGTTGACCTACGTGTTGTTCGTGCTTGGA
TGTTTGGCAGCGCAGGGTGGGGTGTTTGGGAGGGAGGGGGCGGGAGCTGG
AGGCATGAAAGGAGGGAAGTAGAGTGCCCCTTATTTCTGTCTTCTTGTTT
TTGATCAATGCAAGTAGAGAAAGAAGGTGCCAATTAAGGTCAGGTGTGTT
CGGAAGACTCTGAGTGTCGTGCGGGATGAAAGCCGCTACT

protein sequence of jgi.p|Nanoce1779_2|101969

>mRNA_7079-protein ID=mRNA_7079-protein|Name=jgi.p|Nanoce1779_2|101969|organism=Nannochloropsis oceanica|type=polypeptide|length=246bp
MNADMSVCRRFRLPTQPQPHHVSWLSPPLAPSLASFLSPPQECLCNLIQM
PRVPAARHHYLIYRSPAPIAYSSSSLPSSSSSRNERIYTIGPHWAGLVFT
IFLVCLASYLFITHVALELGSIFVGIACVYTFLTLATLLRTACLDPGFIT
RSVPPSLPRRKFCQVCRLYTGPTAQHCEDCKVCIEGLDHHCPWMGHCVGK
GNLGAFLCFNCVWLTYVLFVLGCLAAQGGVFGREGAGAGGMKGGK*

mRNA from alignment at scaffold_16:245311..247050+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7079 ID=mRNA_7079|Name=jgi.p|Nanoce1779_2|101969|organism=Nannochloropsis oceanica|type=mRNA|length=1740bp|location=Sequence derived from alignment at scaffold_16:245311..247050+ (Nannochloropsis oceanica)
CCTCCTCCCCTGGCTACCCCAATCACACAGGATAAGCAGCAGTAGTGGCA
GCAGCTGTGGCCGATGCTCTCCCCCATTGCCGAGTCCCCACAGAAGGAGC
GGGCAGCGGAGCAAGACGAGGAAGAGGGAATAACAGCGACTGTGCGAGCG
CGTGCACAACATAAATATGAACTCCAAGCAAACGATGAGGAGGACGAGGG
GAAGGACGAGGGAGAAGAAGAGGAGGATCGGTTGTTAAACGTTTACTCCA
GAAGAAGATGGAGCCGGTTGGAGACGGTAACTAGAGGAAGGGAGGGAGGA
AGGGATTGAGGGGCAGAACTGTGTGTCCATGCCCCTTTGAAATATGTTCT
TTTTACTTCTAAAACCAATGAGGAGGGTACAGTTTATTTCACGTGGCTGC
TCTAAAAAACGCAGCAATGTTTATTTCCCTGTTATTCCTCTTTCCTCTTC
TCCCCCATTCCTCCACACTTTATAGATGGAAATTGAGAGCGGTCGCAAGA
CACCCACAAGAGGTCCTGGCACCCGCTCCACCTCCTCCTATAGAAGCCTC
GGCACGCAGGACTCTTCCTCTTTCGGCGCATCGCCAGGAGAAGCAGCAAC
AGCAGGAGCGGGAGGAGGAGGGGGAGCAGCAGCAGCAGCAGGAGCGACGC
ACAACCCTCCGCGTTTTCCCTCCTCCTCTTCTTCCTCCACTTATTCCTCG
GGCGCGGCGAGATGGAGAAGCCCATTGAATATTTTGGTGTCGACCAGGAA
TGTTATGAGCCAGATAATGACCTTCTCGAGGGGAGGGATGGAGTGTCCGT
TGCCTTTCTTGTGCGACGAGGACCATCCCGATCCATGTGTAAGTAATGAA
GTAATTGTATGATTAATGTGAAGGGTGTCAAAGAATGAATGCAGATATGT
CCGTTTGTCGACGATTTCGTCTGCCAACTCAACCCCAACCTCATCACGTG
TCTTGGCTCTCTCCTCCCCTCGCTCCCTCACTCGCTTCCTTCCTCTCGCC
CCCACAGGAATGCCTCTGCAATCTCATACAGATGCCCCGCGTCCCCGCCG
CCCGCCATCACTACCTCATCTATCGCTCACCAGCTCCTATCGCCTATTCC
TCCTCCTCCCTTCCTTCTTCGTCCTCGTCAAGAAATGAGCGAATTTATAC
GATTGGCCCGCATTGGGCAGGTCTTGTTTTTACCATATTTTTGGTCTGTC
TGGCTTCGTATTTGTTCATCACCCACGTCGCTCTCGAGCTTGGCTCGATC
TTCGTAGGTATTGCATGTGTGTACACATTCCTGACTTTGGCGACGCTCTT
AAGAACTGCCTGTCTGGACCCCGGGTTTATCACTCGCTCGGTTCCTCCCT
CCCTCCCTCGTCGTAAATTCTGCCAGGTGTGTCGGTTGTACACAGGACCT
ACCGCCCAGCACTGCGAGGACTGCAAAGTGTGCATAGAAGGGCTGGATCA
TCACTGCCCGTGGATGGGACACTGTGTGGGGAAGGGGAATCTAGGCGCGT
TTTTGTGTTTCAATTGCGTGTGGTTGACCTACGTGTTGTTCGTGCTTGGA
TGTTTGGCAGCGCAGGGTGGGGTGTTTGGGAGGGAGGGGGCGGGAGCTGG
AGGCATGAAAGGAGGGAAGTAGAGTGCCCCTTATTTCTGTCTTCTTGTTT
TTGATCAATGCAAGTAGAGAAAGAAGGTGCCAATTAAGGTCAGGTGTGTT
CGGAAGACTCTGAGTGTCGTGCGGGATGAAAGCCGCTACT

Coding sequence (CDS) from alignment at scaffold_16:245311..247050+

>mRNA_7079 ID=mRNA_7079|Name=jgi.p|Nanoce1779_2|101969|organism=Nannochloropsis oceanica|type=CDS|length=738bp|location=Sequence derived from alignment at scaffold_16:245311..247050+ (Nannochloropsis oceanica)
ATGAATGCAGATATGTCCGTTTGTCGACGATTTCGTCTGCCAACTCAACC
CCAACCTCATCACGTGTCTTGGCTCTCTCCTCCCCTCGCTCCCTCACTCG
CTTCCTTCCTCTCGCCCCCACAGGAATGCCTCTGCAATCTCATACAGATG
CCCCGCGTCCCCGCCGCCCGCCATCACTACCTCATCTATCGCTCACCAGC
TCCTATCGCCTATTCCTCCTCCTCCCTTCCTTCTTCGTCCTCGTCAAGAA
ATGAGCGAATTTATACGATTGGCCCGCATTGGGCAGGTCTTGTTTTTACC
ATATTTTTGGTCTGTCTGGCTTCGTATTTGTTCATCACCCACGTCGCTCT
CGAGCTTGGCTCGATCTTCGTAGGTATTGCATGTGTGTACACATTCCTGA
CTTTGGCGACGCTCTTAAGAACTGCCTGTCTGGACCCCGGGTTTATCACT
CGCTCGGTTCCTCCCTCCCTCCCTCGTCGTAAATTCTGCCAGGTGTGTCG
GTTGTACACAGGACCTACCGCCCAGCACTGCGAGGACTGCAAAGTGTGCA
TAGAAGGGCTGGATCATCACTGCCCGTGGATGGGACACTGTGTGGGGAAG
GGGAATCTAGGCGCGTTTTTGTGTTTCAATTGCGTGTGGTTGACCTACGT
GTTGTTCGTGCTTGGATGTTTGGCAGCGCAGGGTGGGGTGTTTGGGAGGG
AGGGGGCGGGAGCTGGAGGCATGAAAGGAGGGAAGTAG

Synonyms

Publications