jgi.p|Nanoce1779_2|595530, mRNA_7077 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|595530
Unique Name	mRNA_7077
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2405
Alignment location	scaffold_16:236105..238526 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	595616
Track	FilteredModels2
ProteinId	595530

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_16	supercontig	scaffold_16:236105..238526 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595530	gene_7077	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595530	mRNA_7077-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7077	CDS_7077	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_16:236105..238526+
coding sequence from alignment at scaffold_16:236105..238526+

mRNA sequence

>mRNA_7077 ID=mRNA_7077|Name=jgi.p|Nanoce1779_2|595530|organism=Nannochloropsis oceanica|type=mRNA|length=2405bp
ACAGGTCTTTCTTCTCTAAAGTATCACGGTTGCTTGTGCTTGGGGCGAGT
TACTGCGTAAGTGTCGCTTTGTTTTCAGTTGAGACGGAGGATATTTTGGA
GGAGGAGGAGCAGCAGCAGCAGCAGCAGCAGCAGAGCAGCAGCAGCAGCA
TAAGCAGCAGAAGCAGAGGAAGCAGCAGCAGCAAGCCCTTCTACCTCCCG
CCAATGCTGTGCTCGTCTACAACCAGGCTTAGGCAGACGTTTGCATTTTT
TCTCCTAGCTTGTCGTTGTTCCAGGACCTTGTCATTTTTCCATCCCCCCA
CCCCTGGCCGCAGCACCCTGCACGCCACCTCTCCCTCTCCTCTTCTTCCC
ATCCCATTCCGCATCAGAATGGATTCCTCCCTTTTCTCTACCGCCACATC
CACTTCGACTGCATCAGTCTCATCCGAAAGCGAAGACGGCCAAGACCGAG
AGGCCTACGAAGATGCCTTGTTCCTCTACAAACGCATGCGCGCCGACGAT
GACCCTCACATAAGCACCCAACTCCACACCGCCCTCGACGTCGTCGAACA
AGCCCTACGACTCTACGGACCCTCCCACGTCTTCGCTTCATACAACGGAG
GGAAGGACGCCGTGGTCGTTATGCATCTCCTTCGTGTCGCCTTGGCCCAT
TATGTACAGGCCCACGAGCTTGACGAGCCCTCCTCATCCTCCTCCACCAC
TTCAACTGTCCCTCGTCCCCGCCTCGTCTACTTCGAACAGCCCTCCACGG
AATTCCCAGAAGTCAAGGCCCTTGTCACACAAACCACCCAACGCTACGAC
CTGGACCTTAAAGTCTACCAAAATGTCCCCTTCGCTCAAGGTCTCAAGGC
CTGTATCGAATCAGAGGGTGGAGCCCCCCTGGCTTTCCTCCTTGGAACGC
GCAAGGGAGATCCGAACTGCAAGGAGCAGGAGACCTTCGCACCCAGTAGT
ACCTGGATGCCGGCATTCATGCGGGTCAACCCGATATTGAACTGGACATA
TGGGGATATCTGGCACTTTTTAAGGAAGTTTAATCTGCCTTATTGCTCGC
TGTATGATCAAGGATACACGAGCCTGGGCAAGGTGGATGACACGCTACCT
AACCCGGCGTTGGCCGTGGGGAAGACGGAGGGAGGGGGGTATTACCCGGC
CCATATGCTGACGGATTGGTCGTTGGAGCGGGCGGGGAGAGTGGACAAGA
AGAAGGAGGCGACGGCACGCGTAGTTGCTGCGGATGGTGGGGGGATCGGG
GAAGGAGAGGAGTGCGACGCCATCGAAGCAGCGGCAGCAGCAGTAGCGGC
AGCAGCAGGAGCAGCGGGGGCGCCTACGCCCCCGCCTAAGGGTAGTCATA
ATGATAAGGCGGACGTCAAGACTGCAGGCCTCATAATCATCGGCGACGAG
ATTCTAAAGGGGAAAACCTCCGACACGAATTCCTTATACGCCGCGCGTCG
TTTACGAGAACGCGGGGTTTCCGTGCAGCGCATCTCGGTACTGTCCGATG
CGCATGCAGATATCGAAGCAGAAGTGCGTGTGCAAGCCGCGAAATTTGAC
ATTGTGATAACGAGCGGCGGAGTCGGACCCACGCACGATGACATCACAAT
CAAGGCAGTGGCCTCGGCTTTGGGACAGGGGGTGAGCGAGAATGAGGAAA
TGATCGGCAAATTGCAAGAGGCCTACGGTGTGGCAACGAGGGAAGAACTG
AGTGATGGGCAGCGAAAAATGGCCCTCCTCCCCGACCATGCCCGCCTGCG
GGTCCCTCCTCCTCCTCCTCCTCCTCCTCATCCACTTCCACCAGCAGGAG
CATCGACAGCAGCAGTAGCAGTAGGGACGACCGGGACCAAAAAGGTCTGG
CCGGTGTTGATGTGTGGGAATGTCTATGTCCTTCCGGGGGTGCCGTCGTT
TTTCGAACAGAAGATGGATACGATTGTGGATCATTTCCTCAATCATTCTC
CTATCTATACTCGTAAGGTTGTTCTAGAGGTGGATGAAGTCGAAATCGTC
GAGCCTTTGAATCGGGCGGTGGCAGAGTTCGAGAAACAGGGGTGCGTGTT
CGGTTCTTACCCTTTTTATGGCGAGGCGTGCCCGAGGGTGGTGATAACGT
TGGAAAGCACGGATGAGGCTATGGTGGAGGCAGCGAAAGATTTCTTCTTG
GGATGCATTCCGCCTGGACATGTGCTGCATGTAGGCGAGGATGATGACCT
GAGGGGACGGGAGGGGGAGGGAAATATGATGACACCGGCGGCCGTTGAGT
CAGCGAATCTGACGTGAGATGGAGGCAATCAATTGAGAGAATTAATGAAC
AGAAGAACAGAGAGAGACAGACAGACAAACGGATATTCTACAAAGTATAG
GAACAACGTAACATTGTGGAAACCTATGAATTAATATGACGCAAAGGCAA
TATTA

protein sequence of jgi.p|Nanoce1779_2|595530

>mRNA_7077-protein ID=mRNA_7077-protein|Name=jgi.p|Nanoce1779_2|595530|organism=Nannochloropsis oceanica|type=polypeptide|length=688bp
MLCSSTTRLRQTFAFFLLACRCSRTLSFFHPPTPGRSTLHATSPSPLLPI
PFRIRMDSSLFSTATSTSTASVSSESEDGQDREAYEDALFLYKRMRADDD
PHISTQLHTALDVVEQALRLYGPSHVFASYNGGKDAVVVMHLLRVALAHY
VQAHELDEPSSSSSTTSTVPRPRLVYFEQPSTEFPEVKALVTQTTQRYDL
DLKVYQNVPFAQGLKACIESEGGAPLAFLLGTRKGDPNCKEQETFAPSST
WMPAFMRVNPILNWTYGDIWHFLRKFNLPYCSLYDQGYTSLGKVDDTLPN
PALAVGKTEGGGYYPAHMLTDWSLERAGRVDKKKEATARVVAADGGGIGE
GEECDAIEAAAAAVAAAAGAAGAPTPPPKGSHNDKADVKTAGLIIIGDEI
LKGKTSDTNSLYAARRLRERGVSVQRISVLSDAHADIEAEVRVQAAKFDI
VITSGGVGPTHDDITIKAVASALGQGVSENEEMIGKLQEAYGVATREELS
DGQRKMALLPDHARLRVPPPPPPPPHPLPPAGASTAAVAVGTTGTKKVWP
VLMCGNVYVLPGVPSFFEQKMDTIVDHFLNHSPIYTRKVVLEVDEVEIVE
PLNRAVAEFEKQGCVFGSYPFYGEACPRVVITLESTDEAMVEAAKDFFLG
CIPPGHVLHVGEDDDLRGREGEGNMMTPAAVESANLT*

mRNA from alignment at scaffold_16:236105..238526+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7077 ID=mRNA_7077|Name=jgi.p|Nanoce1779_2|595530|organism=Nannochloropsis oceanica|type=mRNA|length=2422bp|location=Sequence derived from alignment at scaffold_16:236105..238526+ (Nannochloropsis oceanica)
ACAGGTCTTTCTTCTCTAAAGTATCACGGTTGCTTGTGCTTGGGGCGAGT
TACTGCGTAAGTGTCGCTTTGTTTTCAGTTGAGACGGAGGATATTTTGGA
GGAGGAGGAGCAGCAGCAGCAGCAGCAGCAGCAGAGCAGCAGCAGCAGCA
GAGCAGCAGCAGCAGCATAAGCAGCAGAAGCAGAGGAAGCAGCAGCAGCA
AGCCCTTCTACCTCCCGCCAATGCTGTGCTCGTCTACAACCAGGCTTAGG
CAGACGTTTGCATTTTTTCTCCTAGCTTGTCGTTGTTCCAGGACCTTGTC
ATTTTTCCATCCCCCCACCCCTGGCCGCAGCACCCTGCACGCCACCTCTC
CCTCTCCTCTTCTTCCCATCCCATTCCGCATCAGAATGGATTCCTCCCTT
TTCTCTACCGCCACATCCACTTCGACTGCATCAGTCTCATCCGAAAGCGA
AGACGGCCAAGACCGAGAGGCCTACGAAGATGCCTTGTTCCTCTACAAAC
GCATGCGCGCCGACGATGACCCTCACATAAGCACCCAACTCCACACCGCC
CTCGACGTCGTCGAACAAGCCCTACGACTCTACGGACCCTCCCACGTCTT
CGCTTCATACAACGGAGGGAAGGACGCCGTGGTCGTTATGCATCTCCTTC
GTGTCGCCTTGGCCCATTATGTACAGGCCCACGAGCTTGACGAGCCCTCC
TCATCCTCCTCCACCACTTCAACTGTCCCTCGTCCCCGCCTCGTCTACTT
CGAACAGCCCTCCACGGAATTCCCAGAAGTCAAGGCCCTTGTCACACAAA
CCACCCAACGCTACGACCTGGACCTTAAAGTCTACCAAAATGTCCCCTTC
GCTCAAGGTCTCAAGGCCTGTATCGAATCAGAGGGTGGAGCCCCCCTGGC
TTTCCTCCTTGGAACGCGCAAGGGAGATCCGAACTGCAAGGAGCAGGAGA
CCTTCGCACCCAGTAGTACCTGGATGCCGGCATTCATGCGGGTCAACCCG
ATATTGAACTGGACATATGGGGATATCTGGCACTTTTTAAGGAAGTTTAA
TCTGCCTTATTGCTCGCTGTATGATCAAGGATACACGAGCCTGGGCAAGG
TGGATGACACGCTACCTAACCCGGCGTTGGCCGTGGGGAAGACGGAGGGA
GGGGGGTATTACCCGGCCCATATGCTGACGGATTGGTCGTTGGAGCGGGC
GGGGAGAGTGGACAAGAAGAAGGAGGCGACGGCACGCGTAGTTGCTGCGG
ATGGTGGGGGGATCGGGGAAGGAGAGGAGTGCGACGCCATCGAAGCAGCG
GCAGCAGCAGTAGCGGCAGCAGCAGGAGCAGCGGGGGCGCCTACGCCCCC
GCCTAAGGGTAGTCATAATGATAAGGCGGACGTCAAGACTGCAGGCCTCA
TAATCATCGGCGACGAGATTCTAAAGGGGAAAACCTCCGACACGAATTCC
TTATACGCCGCGCGTCGTTTACGAGAACGCGGGGTTTCCGTGCAGCGCAT
CTCGGTACTGTCCGATGCGCATGCAGATATCGAAGCAGAAGTGCGTGTGC
AAGCCGCGAAATTTGACATTGTGATAACGAGCGGCGGAGTCGGACCCACG
CACGATGACATCACAATCAAGGCAGTGGCCTCGGCTTTGGGACAGGGGGT
GAGCGAGAATGAGGAAATGATCGGCAAATTGCAAGAGGCCTACGGTGTGG
CAACGAGGGAAGAACTGAGTGATGGGCAGCGAAAAATGGCCCTCCTCCCC
GACCATGCCCGCCTGCGGGTCCCTCCTCCTCCTCCTCCTCCTCCTCATCC
ACTTCCACCAGCAGGAGCATCGACAGCAGCAGTAGCAGTAGGGACGACCG
GGACCAAAAAGGTCTGGCCGGTGTTGATGTGTGGGAATGTCTATGTCCTT
CCGGGGGTGCCGTCGTTTTTCGAACAGAAGATGGATACGATTGTGGATCA
TTTCCTCAATCATTCTCCTATCTATACTCGTAAGGTTGTTCTAGAGGTGG
ATGAAGTCGAAATCGTCGAGCCTTTGAATCGGGCGGTGGCAGAGTTCGAG
AAACAGGGGTGCGTGTTCGGTTCTTACCCTTTTTATGGCGAGGCGTGCCC
GAGGGTGGTGATAACGTTGGAAAGCACGGATGAGGCTATGGTGGAGGCAG
CGAAAGATTTCTTCTTGGGATGCATTCCGCCTGGACATGTGCTGCATGTA
GGCGAGGATGATGACCTGAGGGGACGGGAGGGGGAGGGAAATATGATGAC
ACCGGCGGCCGTTGAGTCAGCGAATCTGACGTGAGATGGAGGCAATCAAT
TGAGAGAATTAATGAACAGAAGAACAGAGAGAGACAGACAGACAAACGGA
TATTCTACAAAGTATAGGAACAACGTAACATTGTGGAAACCTATGAATTA
ATATGACGCAAAGGCAATATTA

Coding sequence (CDS) from alignment at scaffold_16:236105..238526+

>mRNA_7077 ID=mRNA_7077|Name=jgi.p|Nanoce1779_2|595530|organism=Nannochloropsis oceanica|type=CDS|length=2064bp|location=Sequence derived from alignment at scaffold_16:236105..238526+ (Nannochloropsis oceanica)
ATGCTGTGCTCGTCTACAACCAGGCTTAGGCAGACGTTTGCATTTTTTCT
CCTAGCTTGTCGTTGTTCCAGGACCTTGTCATTTTTCCATCCCCCCACCC
CTGGCCGCAGCACCCTGCACGCCACCTCTCCCTCTCCTCTTCTTCCCATC
CCATTCCGCATCAGAATGGATTCCTCCCTTTTCTCTACCGCCACATCCAC
TTCGACTGCATCAGTCTCATCCGAAAGCGAAGACGGCCAAGACCGAGAGG
CCTACGAAGATGCCTTGTTCCTCTACAAACGCATGCGCGCCGACGATGAC
CCTCACATAAGCACCCAACTCCACACCGCCCTCGACGTCGTCGAACAAGC
CCTACGACTCTACGGACCCTCCCACGTCTTCGCTTCATACAACGGAGGGA
AGGACGCCGTGGTCGTTATGCATCTCCTTCGTGTCGCCTTGGCCCATTAT
GTACAGGCCCACGAGCTTGACGAGCCCTCCTCATCCTCCTCCACCACTTC
AACTGTCCCTCGTCCCCGCCTCGTCTACTTCGAACAGCCCTCCACGGAAT
TCCCAGAAGTCAAGGCCCTTGTCACACAAACCACCCAACGCTACGACCTG
GACCTTAAAGTCTACCAAAATGTCCCCTTCGCTCAAGGTCTCAAGGCCTG
TATCGAATCAGAGGGTGGAGCCCCCCTGGCTTTCCTCCTTGGAACGCGCA
AGGGAGATCCGAACTGCAAGGAGCAGGAGACCTTCGCACCCAGTAGTACC
TGGATGCCGGCATTCATGCGGGTCAACCCGATATTGAACTGGACATATGG
GGATATCTGGCACTTTTTAAGGAAGTTTAATCTGCCTTATTGCTCGCTGT
ATGATCAAGGATACACGAGCCTGGGCAAGGTGGATGACACGCTACCTAAC
CCGGCGTTGGCCGTGGGGAAGACGGAGGGAGGGGGGTATTACCCGGCCCA
TATGCTGACGGATTGGTCGTTGGAGCGGGCGGGGAGAGTGGACAAGAAGA
AGGAGGCGACGGCACGCGTAGTTGCTGCGGATGGTGGGGGGATCGGGGAA
GGAGAGGAGTGCGACGCCATCGAAGCAGCGGCAGCAGCAGTAGCGGCAGC
AGCAGGAGCAGCGGGGGCGCCTACGCCCCCGCCTAAGGGTAGTCATAATG
ATAAGGCGGACGTCAAGACTGCAGGCCTCATAATCATCGGCGACGAGATT
CTAAAGGGGAAAACCTCCGACACGAATTCCTTATACGCCGCGCGTCGTTT
ACGAGAACGCGGGGTTTCCGTGCAGCGCATCTCGGTACTGTCCGATGCGC
ATGCAGATATCGAAGCAGAAGTGCGTGTGCAAGCCGCGAAATTTGACATT
GTGATAACGAGCGGCGGAGTCGGACCCACGCACGATGACATCACAATCAA
GGCAGTGGCCTCGGCTTTGGGACAGGGGGTGAGCGAGAATGAGGAAATGA
TCGGCAAATTGCAAGAGGCCTACGGTGTGGCAACGAGGGAAGAACTGAGT
GATGGGCAGCGAAAAATGGCCCTCCTCCCCGACCATGCCCGCCTGCGGGT
CCCTCCTCCTCCTCCTCCTCCTCCTCATCCACTTCCACCAGCAGGAGCAT
CGACAGCAGCAGTAGCAGTAGGGACGACCGGGACCAAAAAGGTCTGGCCG
GTGTTGATGTGTGGGAATGTCTATGTCCTTCCGGGGGTGCCGTCGTTTTT
CGAACAGAAGATGGATACGATTGTGGATCATTTCCTCAATCATTCTCCTA
TCTATACTCGTAAGGTTGTTCTAGAGGTGGATGAAGTCGAAATCGTCGAG
CCTTTGAATCGGGCGGTGGCAGAGTTCGAGAAACAGGGGTGCGTGTTCGG
TTCTTACCCTTTTTATGGCGAGGCGTGCCCGAGGGTGGTGATAACGTTGG
AAAGCACGGATGAGGCTATGGTGGAGGCAGCGAAAGATTTCTTCTTGGGA
TGCATTCCGCCTGGACATGTGCTGCATGTAGGCGAGGATGATGACCTGAG
GGGACGGGAGGGGGAGGGAAATATGATGACACCGGCGGCCGTTGAGTCAG
CGAATCTGACGTGA

Synonyms

Publications