jgi.p|Nanoce1779_2|101769, mRNA_7075 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|101769
Unique NamemRNA_7075
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1301
Alignment locationscaffold_16:232710..234010 +

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Properties
Property NameValue
TranscriptId101855
TrackFilteredModels2
ProteinId101769
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:232710..234010 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|101769gene_7075Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|101769mRNA_7075-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7075CDS_7075Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7075 ID=mRNA_7075|Name=jgi.p|Nanoce1779_2|101769|organism=Nannochloropsis oceanica|type=mRNA|length=1301bp
AAGTGGCTGACTTGTTCACTGCTTGCGTGTGCGTTATGCGTGGGCGATGA
GGGAGGAGGTCTTTTCGGTCTTGTGAATAAAGTGTACTTATACGTCGCAG
CAGTCGTCGCGCCTGTGCTGCGACGTGGAGCATGATTTGGTGCAGACAAA
GGAAGTCTACAGTGTTTGTCAAGGGTGCCAGACGTAGAAATGTTGCCTGG
CATTCTAACAGCTTTTATCGCTTCTCGCCGAAACTTTTTTTTAACCCCCC
ACCCCTTTCGTGCACCCGCCCACACCCACACCCACGACAACAACTACACG
ACCACACAACTACATCGCGCGTAGAAATGTCAGCGACCAATGAAGAGTCT
TTTCTATCTGCTCCTCTTTCTCGTGGTGTGGGTGAATGGCAGGTGGAACA
ACACGACGGGGAAGAGCAGGAGGAGGACGCGGACGACTTCGAGGATGACA
ACTACAGTGCCAGCTCCACCATCAGCGACTATAACTCCACGGTCGCCTAC
AGGATAGACATGAGACCCCCCATCCGTCTCGGGGGCATCAGTGTAGGCTT
ATATGCCCTGAGGATGGCTCGGGGCATATCATTGATGATGGTAGTGATAT
GCAAGTCACGGAAGTTTCATGGGATAGCGAAAAGGTTAGAATGGAAGAAT
GGCAAACAAGTCTTGATGCAAAAAGAAAAACATCTATGGTGTCTATTTTC
AGACAACTTTTTATTTTTTGGCTGCACACACAATGGATTTGCACACTGCT
TTCATCAGGCAGCGAGTTCGGGACTCGAGGTCTCGTTGGGTCCGGGTCGG
TTGCCGAGGACGACTTCATTCGTCTGCAACCCGTCCTGTTCGTAAATGGT
AGCAGCATACCAGCGACCAAGACAGTGGTAGCCGCTAACGCATTCACGCA
TGTCATTTACGCACATAGCACGTTCGTACACGGTCACAGAACAGGAGCAA
TGGCGCATGGAGGAGCGAGGAGCTACTTGTTCGATGTGTGACGGACCTAT
TGCGCACACGGAAACAAAGCAAGGGTACCTTCAAAGACAAGAGAGATAGA
ATTTACCATTCAATTATCTTCGTCTTGCTATATTTTATCCTTCAATTCTT
TGTACATTCACCCCTCCCCGCGTTTCTCCATCCCTCCCTCGCCAATTACC
TCCCCTCCTTTTTTCACCTCCTCGAGTCTACCGACGCGCCTTCATGAGAG
CTCCATCCTCTCCCTTTACCACGATCATCACTATTCGAAAACGGTGAATT
GTTGCATGTCAACGCCCCCTCCTTTCCTCCTTTCCCTCCCTCTCCTCCCC
C
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protein sequence of jgi.p|Nanoce1779_2|101769

>mRNA_7075-protein ID=mRNA_7075-protein|Name=jgi.p|Nanoce1779_2|101769|organism=Nannochloropsis oceanica|type=polypeptide|length=238bp
MIWCRQRKSTVFVKGARRRNVAWHSNSFYRFSPKLFFNPPPLSCTRPHPH
PRQQLHDHTTTSRVEMSATNEESFLSAPLSRGVGEWQVEQHDGEEQEEDA
DDFEDDNYSASSTISDYNSTVAYRIDMRPPIRLGGISVGLYALRMARGIS
LMMVVICKSRKFHGIAKRLEWKNGKQVLMQKEKHLWCLFSDNFLFFGCTH
NGFAHCFHQAASSGLEVSLGPGRLPRTTSFVCNPSCS*
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mRNA from alignment at scaffold_16:232710..234010+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7075 ID=mRNA_7075|Name=jgi.p|Nanoce1779_2|101769|organism=Nannochloropsis oceanica|type=mRNA|length=1301bp|location=Sequence derived from alignment at scaffold_16:232710..234010+ (Nannochloropsis oceanica)
AAGTGGCTGACTTGTTCACTGCTTGCGTGTGCGTTATGCGTGGGCGATGA
GGGAGGAGGTCTTTTCGGTCTTGTGAATAAAGTGTACTTATACGTCGCAG
CAGTCGTCGCGCCTGTGCTGCGACGTGGAGCATGATTTGGTGCAGACAAA
GGAAGTCTACAGTGTTTGTCAAGGGTGCCAGACGTAGAAATGTTGCCTGG
CATTCTAACAGCTTTTATCGCTTCTCGCCGAAACTTTTTTTTAACCCCCC
ACCCCTTTCGTGCACCCGCCCACACCCACACCCACGACAACAACTACACG
ACCACACAACTACATCGCGCGTAGAAATGTCAGCGACCAATGAAGAGTCT
TTTCTATCTGCTCCTCTTTCTCGTGGTGTGGGTGAATGGCAGGTGGAACA
ACACGACGGGGAAGAGCAGGAGGAGGACGCGGACGACTTCGAGGATGACA
ACTACAGTGCCAGCTCCACCATCAGCGACTATAACTCCACGGTCGCCTAC
AGGATAGACATGAGACCCCCCATCCGTCTCGGGGGCATCAGTGTAGGCTT
ATATGCCCTGAGGATGGCTCGGGGCATATCATTGATGATGGTAGTGATAT
GCAAGTCACGGAAGTTTCATGGGATAGCGAAAAGGTTAGAATGGAAGAAT
GGCAAACAAGTCTTGATGCAAAAAGAAAAACATCTATGGTGTCTATTTTC
AGACAACTTTTTATTTTTTGGCTGCACACACAATGGATTTGCACACTGCT
TTCATCAGGCAGCGAGTTCGGGACTCGAGGTCTCGTTGGGTCCGGGTCGG
TTGCCGAGGACGACTTCATTCGTCTGCAACCCGTCCTGTTCGTAAATGGT
AGCAGCATACCAGCGACCAAGACAGTGGTAGCCGCTAACGCATTCACGCA
TGTCATTTACGCACATAGCACGTTCGTACACGGTCACAGAACAGGAGCAA
TGGCGCATGGAGGAGCGAGGAGCTACTTGTTCGATGTGTGACGGACCTAT
TGCGCACACGGAAACAAAGCAAGGGTACCTTCAAAGACAAGAGAGATAGA
ATTTACCATTCAATTATCTTCGTCTTGCTATATTTTATCCTTCAATTCTT
TGTACATTCACCCCTCCCCGCGTTTCTCCATCCCTCCCTCGCCAATTACC
TCCCCTCCTTTTTTCACCTCCTCGAGTCTACCGACGCGCCTTCATGAGAG
CTCCATCCTCTCCCTTTACCACGATCATCACTATTCGAAAACGGTGAATT
GTTGCATGTCAACGCCCCCTCCTTTCCTCCTTTCCCTCCCTCTCCTCCCC
C
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Coding sequence (CDS) from alignment at scaffold_16:232710..234010+

>mRNA_7075 ID=mRNA_7075|Name=jgi.p|Nanoce1779_2|101769|organism=Nannochloropsis oceanica|type=CDS|length=714bp|location=Sequence derived from alignment at scaffold_16:232710..234010+ (Nannochloropsis oceanica)
ATGATTTGGTGCAGACAAAGGAAGTCTACAGTGTTTGTCAAGGGTGCCAG
ACGTAGAAATGTTGCCTGGCATTCTAACAGCTTTTATCGCTTCTCGCCGA
AACTTTTTTTTAACCCCCCACCCCTTTCGTGCACCCGCCCACACCCACAC
CCACGACAACAACTACACGACCACACAACTACATCGCGCGTAGAAATGTC
AGCGACCAATGAAGAGTCTTTTCTATCTGCTCCTCTTTCTCGTGGTGTGG
GTGAATGGCAGGTGGAACAACACGACGGGGAAGAGCAGGAGGAGGACGCG
GACGACTTCGAGGATGACAACTACAGTGCCAGCTCCACCATCAGCGACTA
TAACTCCACGGTCGCCTACAGGATAGACATGAGACCCCCCATCCGTCTCG
GGGGCATCAGTGTAGGCTTATATGCCCTGAGGATGGCTCGGGGCATATCA
TTGATGATGGTAGTGATATGCAAGTCACGGAAGTTTCATGGGATAGCGAA
AAGGTTAGAATGGAAGAATGGCAAACAAGTCTTGATGCAAAAAGAAAAAC
ATCTATGGTGTCTATTTTCAGACAACTTTTTATTTTTTGGCTGCACACAC
AATGGATTTGCACACTGCTTTCATCAGGCAGCGAGTTCGGGACTCGAGGT
CTCGTTGGGTCCGGGTCGGTTGCCGAGGACGACTTCATTCGTCTGCAACC
CGTCCTGTTCGTAA
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Synonyms
Publications