jgi.p|Nanoce1779_2|595502, mRNA_7070 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595502
Unique NamemRNA_7070
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length569
Alignment locationscaffold_16:222215..223461 -

Link to JBrowse

Properties
Property NameValue
TranscriptId595588
TrackFilteredModels2
ProteinId595502
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:222215..223461 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595502gene_7070Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595502mRNA_7070-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7070CDS_7070Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7070 ID=mRNA_7070|Name=jgi.p|Nanoce1779_2|595502|organism=Nannochloropsis oceanica|type=mRNA|length=569bp
AGCTACAGAAAGCGCCGCGGGCTCCGGCATCCATACTAGCCTCCCTCCCT
CCTTCCGCGCGTCGCCGAGCCAAGGCCAAGCAAGCCAGCCTATCACAATG
AATGAACCCAAGCGGGCGGACTCGTACCGGCTGGTGGAAGGCGAGAGGAA
ATGTGAATGGAAAGATAGTGCCAACGAGAAGATGCCTAATTCGGGCACAC
TGACCATCAACAAGGAGGATCACACCATGGGGAATCTTGTTCGGATGCAG
CTCCTGAGAGATAAGCAAGTAAAGTTTGCAGGCTACATCCACCCACACCC
TTTGATTCATAAAATTGAGCTGCGGGTGCAGACTATGGATAGGGCGCTGT
CGACTCCCATGCAGGCCCTAGAAAATGCCTTGTCCGATCTGAATCAAGAG
TTCACGGGTCTCAAAAGCAAGTTCCAACAAGAAGTGAGACGCGTCCAAGA
AGAACAAGCAGAGCGGGAGTACAGATAGAGAAAGAAGAGGGAGGGAGGAA
GTGTGGGAGGGAGGGAGGAAGGAAGGGAGGAAGGGAGGTGTTTATACAGA
AAGAAGAAGAAGCAATGAG
back to top

protein sequence of jgi.p|Nanoce1779_2|595502

>mRNA_7070-protein ID=mRNA_7070-protein|Name=jgi.p|Nanoce1779_2|595502|organism=Nannochloropsis oceanica|type=polypeptide|length=127bp
MNEPKRADSYRLVEGERKCEWKDSANEKMPNSGTLTINKEDHTMGNLVRM
QLLRDKQVKFAGYIHPHPLIHKIELRVQTMDRALSTPMQALENALSDLNQ
EFTGLKSKFQQEVRRVQEEQAEREYR*
back to top

mRNA from alignment at scaffold_16:222215..223461-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7070 ID=mRNA_7070|Name=jgi.p|Nanoce1779_2|595502|organism=Nannochloropsis oceanica|type=mRNA|length=1247bp|location=Sequence derived from alignment at scaffold_16:222215..223461- (Nannochloropsis oceanica)
AGCTACAGAAAGCGCCGCGGGCTCCGGCATCCATACTAGCCTCCCTCCCT
CCTTCCGCGCGTCGCCGAGCCAAGGCCAAGCAAGCCAGCCTATCACAATG
AATGAACCCAAGCGGTAAGTCCGTAGGGAGAAATGCTTCCACCACCACTC
AAAGGAGGAGCTTCACTTTTTTGGCGTCGTGTAAGGGCAGTGTGGTCATG
TATGTGTGGAGAATCTCCCACGCGTTGTGTAAGGGCATTGTGGTCATGTA
TGTGAGAAAAAGGCCACCATTCTCCCACGGTTAGGACAGACCAGGCTACC
CTGCTTGCGCTACCCCTTTCCCCTACCTCCTTTCCGCATACATGACAATC
TGATCGTGGATCCTCAAGAGGTTTGAAAGGGCTTGCGTCATGGATGTGCC
TGTTCACTCGCTCACTCACACACCATCCGTCTTGCTCACTATCATACTTA
CCCACGATCAATAACAGGGCGGACTCGTACCGGCTGGTGGAAGGCGAGAG
GAAGTAAGTGCACCAGGAAATGGGTTATGACAAGGGTTTATTACCCTGAT
TTTGTGTGTGTTATATTCTTTGTATCTGTGTCCGCGTATTTTGTCGCGTT
TTGGGTCGGCTTTTGTTGCTAGTCTCTGTATGTATGTACGTGCTCATGTT
CGCATTTTGTGTTTTTCAGCTAATGCATAACAAGCTCTCACCTGCCGTCC
CTCCACTCTTTCTTCCTCCCTCTCTCAGATGTGAATGGAAAGATAGTGCC
AACGAGAAGATGCCTAATTCGGGCACACTGACCATCAACAAGGAGGATCA
CACCATGGGGAATCTTGTTCGGATGCAGCTCCTGAGAGATAAGCAAGTAA
AGTTTGCAGGCTACATCCACCCACACCCTTTGATTCATAAAATTGAGCTG
CGGGTGCAGACTATGGATAGGGCGCTGTCGACTCCCATGCAGGTATTTAT
TCATTGATCGATTTACTTGGTCATTCATTTGTTTATTTATTGGTGAACTA
ATTCACAAACTTATTTTATGTATTTTTCAATATTGACTACAGGCCCTAGA
AAATGCCTTGTCCGATCTGAATCAAGAGTTCACGGGTCTCAAAAGCAAGT
TCCAACAAGAAGTGAGACGCGTCCAAGAAGAACAAGCAGAGCGGGAGTAC
AGATAGAGAAAGAAGAGGGAGGGAGGAAGTGTGGGAGGGAGGGAGGAAGG
AAGGGAGGAAGGGAGGTGTTTATACAGAAAGAAGAAGAAGCAATGAG
back to top

Coding sequence (CDS) from alignment at scaffold_16:222215..223461-

>mRNA_7070 ID=mRNA_7070|Name=jgi.p|Nanoce1779_2|595502|organism=Nannochloropsis oceanica|type=CDS|length=1524bp|location=Sequence derived from alignment at scaffold_16:222215..223461- (Nannochloropsis oceanica)
GCCCTAGAAAATGCCTTGTCCGATCTGAATCAAGAGTTCACGGGTCTCAA
AAGCAAGTTCCAACAAGAAGTGAGACGCGTCCAAGAAGAACAAGCAGAGC
GGGAGTACAGATAGATGTGAATGGAAAGATAGTGCCAACGAGAAGATGCC
TAATTCGGGCACACTGACCATCAACAAGGAGGATCACACCATGGGGAATC
TTGTTCGGATGCAGCTCCTGAGAGATAAGCAAGTAAAGTTTGCAGGCTAC
ATCCACCCACACCCTTTGATTCATAAAATTGAGCTGCGGGTGCAGACTAT
GGATAGGGCGCTGTCGACTCCCATGCAGGGCGGACTCGTACCGGCTGGTG
GAAGGCGAGAGGAAATGAATGAACCCAAGCGGCCCTAGAAAATGCCTTGT
CCGATCTGAATCAAGAGTTCACGGGTCTCAAAAGCAAGTTCCAACAAGAA
GTGAGACGCGTCCAAGAAGAACAAGCAGAGCGGGAGTACAGATAGATGTG
AATGGAAAGATAGTGCCAACGAGAAGATGCCTAATTCGGGCACACTGACC
ATCAACAAGGAGGATCACACCATGGGGAATCTTGTTCGGATGCAGCTCCT
GAGAGATAAGCAAGTAAAGTTTGCAGGCTACATCCACCCACACCCTTTGA
TTCATAAAATTGAGCTGCGGGTGCAGACTATGGATAGGGCGCTGTCGACT
CCCATGCAGGGCGGACTCGTACCGGCTGGTGGAAGGCGAGAGGAAATGAA
TGAACCCAAGCGGCCCTAGAAAATGCCTTGTCCGATCTGAATCAAGAGTT
CACGGGTCTCAAAAGCAAGTTCCAACAAGAAGTGAGACGCGTCCAAGAAG
AACAAGCAGAGCGGGAGTACAGATAGATGTGAATGGAAAGATAGTGCCAA
CGAGAAGATGCCTAATTCGGGCACACTGACCATCAACAAGGAGGATCACA
CCATGGGGAATCTTGTTCGGATGCAGCTCCTGAGAGATAAGCAAGTAAAG
TTTGCAGGCTACATCCACCCACACCCTTTGATTCATAAAATTGAGCTGCG
GGTGCAGACTATGGATAGGGCGCTGTCGACTCCCATGCAGGGCGGACTCG
TACCGGCTGGTGGAAGGCGAGAGGAAATGAATGAACCCAAGCGGCCCTAG
AAAATGCCTTGTCCGATCTGAATCAAGAGTTCACGGGTCTCAAAAGCAAG
TTCCAACAAGAAGTGAGACGCGTCCAAGAAGAACAAGCAGAGCGGGAGTA
CAGATAGATGTGAATGGAAAGATAGTGCCAACGAGAAGATGCCTAATTCG
GGCACACTGACCATCAACAAGGAGGATCACACCATGGGGAATCTTGTTCG
GATGCAGCTCCTGAGAGATAAGCAAGTAAAGTTTGCAGGCTACATCCACC
CACACCCTTTGATTCATAAAATTGAGCTGCGGGTGCAGACTATGGATAGG
GCGCTGTCGACTCCCATGCAGGGCGGACTCGTACCGGCTGGTGGAAGGCG
AGAGGAAATGAATGAACCCAAGCG
back to top
Synonyms
Publications