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Properties
| Property Name | Value |
|---|
| TranscriptId | 557557 |
| Track | FilteredModels2 |
| ProteinId | 557471 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_16 | supercontig | scaffold_16:216588..219258 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_7068 ID=mRNA_7068|Name=jgi.p|Nanoce1779_2|557471|organism=Nannochloropsis oceanica|type=mRNA|length=2004bp
CACAGACAATTACAAGAATCAGGAGCAGGGCCACACAAACACAGAGAGCA
GCATGCTTCTGCGCGTGCGCAGTAAGGTGGGCACCTGGCGTGTGGAAGGC
GTCGGGCCCGAATTGACAGTTGCCGCGTTGAGAAACCGTGTCCTGGCAGA
GCATGGTGTGACTCCTCACCCTTCTCAGATCTTCAGTCTTGACCCGGCGG
GGAAGCGGGTGATGGAGGATGGGCAGACGGTGGCAATGTTGGGCTTAAAG
CATGGGGATTTGGTGCATTTGGCGATTCGGGAAGAGGATTGTGCGCACGA
GGCTGGAAAAAAAATCGCTGCGGATGGGAGTATTGTGAACAAGACACATT
TGGAGGCGTCCCGTGAGAGGGGATTTCGGCCAGGGATGATGTCTTTAAGG
AGCATGAAGATGCACTGGACATTGACGGATTTCGTGGAGCTGGACGCGCA
ATTTGAGTATAAGATCAAGGCGCAGAAGAACGAGAATCCCTGGTGCACCA
AGGCCATTATGGAGCCAGCGTGCGGGAATGACTTCCAGTCCTACATGCGC
CGCTTGGGGTTCAACCAGTGCCGTGTAGGCTACCTCTACGGCACATTTAC
GGATGCGAAGGAGGCCAAGGTTGAGGTACTGTACGAGCCGCCGCAAGAAG
GCACACATGAAAGCTTCGAGCTTCTGGAGGACCCGCGTGCCGAGAAGGTC
GACGCGCTGGTCGCCGCATTGGGCCTGACTAAGGTCGGGTGGATTTTCGC
CCATCCCCCGCGCGAAGAAGGCTTTATATTTTCCGGTTTGGAAGTCATGC
TGGCCGCGATGGGTCAGCTTGAGGCCGCCGATGGGGTGAAAGAAACGCCT
TTTGTCACTGTGCGAGTCTCGTTGGCGCCGGCGGAGAAGGTGGAGGGGGA
GGAAGGGAAGGAAGGAGGGCCGACGGCGCCATCGGTTGCGCATTTCGATG
CCTTCCAAGTGAGTTTGCAGTGTATGGAGATGGTGGCAGAAGGTGCGGTG
GAACCCGGGGAGGAGCCAGGCTCCATGCACGTGAACGAGTCCTTCACCGC
GATTGTGGAGGGTCGTGCTGCCAAGACAGTGGACAACAACTTCTTTTTGG
TGAATGTCCCCGTAGGGAGCGAAGAGAGCAAGTTGTTTTTATCCCAATAC
CCCAAGTGGAACCGACTGGATGAGCTCCCGGACGCCAAGACTATGGCTGC
ACAATTATCACAAGCGGGTAAGGCCGGATGGCGGTTTGTGGACTTGTTGG
GCGATTTCCATTTGTTGTTGTTTCTGGCGGAGTTCTTGGATATGAGCGAG
ATGGAGGTGGTGTGTGCGAGTGTGCGGGATAAAGAGAGTGTGCCGTTAGG
AGAAGGTCACGTGGCGCTGATCCGGGCGATTGCAGGGATGGATTGAATGT
GAGGGATAGGGAGAAAAGAGGGAGAGGAGGCAGAGATCAAAGAAGGAAAG
AAGACGAATGAGAATGGAGCGGTGCTTGATTCATATGATGGTAGCGCATT
TCGAGTAAAATGCAAGCACTTCTATTGTTGGAGAGTTTTCGTTCCATTTC
GAGGGAAAAAGCATTCAATGCGTATTTCCAAAATCATTTCCGCATCATAA
GTCGACTCATGGTGATAGCGGGGAACGCCACGACTGCTGGTGTGGAAAAT
CTCTCAACTCTATCACCAATTAAACGCATGCACATAGACGAGAAAGATAG
AGCCTTTCAGACATATTTGTTTCGTTCTCTTTTCAAGTAGTAGTATCGCC
CGCCTCAATGTTGTTGTCCGCATTGCGGTGCGTGTTACTTTGGGTCTCAA
CTGATGCCACCCAGCCCTGCTTTCCCGTGCCTTTCACCCCTCAGCCCCTC
TTCACCCTCTTCCCTCAATACCTCCTCCCTCCTCGCTCCCTACTTCGGCT
TCGACTCCTATCCCTCCCTCCCCGTCCGTTATCTCGATCTCTCCCCCTTT
CCCTATACCTGTCCCCTCCACCACGCTCCCTCTCTCTATCTTCACGATAA
TCCC back to topprotein sequence of jgi.p|Nanoce1779_2|557471 >mRNA_7068-protein ID=mRNA_7068-protein|Name=jgi.p|Nanoce1779_2|557471|organism=Nannochloropsis oceanica|type=polypeptide|length=448bp
MLLRVRSKVGTWRVEGVGPELTVAALRNRVLAEHGVTPHPSQIFSLDPAG
KRVMEDGQTVAMLGLKHGDLVHLAIREEDCAHEAGKKIAADGSIVNKTHL
EASRERGFRPGMMSLRSMKMHWTLTDFVELDAQFEYKIKAQKNENPWCTK
AIMEPACGNDFQSYMRRLGFNQCRVGYLYGTFTDAKEAKVEVLYEPPQEG
THESFELLEDPRAEKVDALVAALGLTKVGWIFAHPPREEGFIFSGLEVML
AAMGQLEAADGVKETPFVTVRVSLAPAEKVEGEEGKEGGPTAPSVAHFDA
FQVSLQCMEMVAEGAVEPGEEPGSMHVNESFTAIVEGRAAKTVDNNFFLV
NVPVGSEESKLFLSQYPKWNRLDELPDAKTMAAQLSQAGKAGWRFVDLLG
DFHLLLFLAEFLDMSEMEVVCASVRDKESVPLGEGHVALIRAIAGMD* back to topmRNA from alignment at scaffold_16:216588..219258- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_7068 ID=mRNA_7068|Name=jgi.p|Nanoce1779_2|557471|organism=Nannochloropsis oceanica|type=mRNA|length=2671bp|location=Sequence derived from alignment at scaffold_16:216588..219258- (Nannochloropsis oceanica)
CACAGACAATTACAAGAATCAGGAGCAGGGCCACACAAACACAGAGAGCA
GCATGCTTCTGCGCGTGCGCAGTAAGGTGGGCACCTGGCGTGTGGAAGGC
GTCGGGCCCGAATTGACAGTTGCCGCGTTGAGAAACCGTGTCCTGGCAGA
GCATGGTGTGACTCCTCACCCTTCTCAGATCTTCAGTCTTGACCCGGCGG
GGAAGCGGGTGATGGAGGATGGGCAGACGGTGGCAATGTTGGGCTTAAAG
CATGGGGATTTGGTGCATTTGGCGATTCGGGAAGAGGATTGTGCGCACGA
GGCTGGAAAAAAAATCGCTGCGGATGGGAGTATTGTGAACAAGACACATT
TGGAGGCGTCCCGTGAGAGGGGATTTCGGCCAGGGATGATGTCTTTAAGG
AGCATGAAGATGCACTGGACATTGACGGATTTCGTGGAGCTGGACGCGCA
ATTTGAGTATAAGATCAAGGCGCAGAAGAACGAGAATCCCTGGTGCACCA
AGGCCATTATGGAGCCAGCGTGCGGGAATGACTTCCAGGTGCGAAGGGAG
AGTGGGAGGGAGGGGCTAGAAAGGGTGATGGAGAGTTGTCTTTTGTGAGG
AGGGGGTGTGAGTATTGTGGTTAATGGCAATTGTGGAGCAGAGCGTGCAG
TTTGACTGAGGTTGCATTTTGTGTCCCCCACCCTTCCTCCCTCCCCTTAC
TAACCCTGGTCGACGAAGACAACGTCTCAGAACGAATCTTGGGTAGCTTT
TCCTTCTCCTCTTCTTCCTTTCTCACCTGTCCTCGTTCTAGCTCGACCTC
TATCATTCAGCTTCCTCCCTTCAGGTCATCCTCTTTCTCTCGTCCTTCCT
TTCCCTCCATCCCTCCCTCCCTAGTCCTACATGCGCCGCTTGGGGTTCAA
CCAGTGCCGTGTAGGCTACCTCTACGGCACATTTACGGATGCGAAGGAGG
CCAAGGTTGAGGTACTGTACGAGCCGCCGCAAGAAGGTGAGGAAGGGAGA
TAGATATGTTGACGCATGCGATGAATTCACAAAAGAAACTAAAGAGGTCT
CATGTGCTTAGAAAAGTACGTGCATGTGGTCTGATCGATTGAAATGGGTG
TAGTTATTGGGCCTCATTAAGGTAAAGGGGAGCAAAGCATGCAAAGCATG
TTGAGGTGTGGCGGCTTCTTCAACGCTGCCATTGACAAGTCCCCAGTCAC
ATGCAGCATACTCACCGGCACACACCCACACCTCACCCATAACCATATCT
ACACGCCCGTACGACAAACACACCCACACATATCTCCGCACATGAACACA
AACACACACATATATAGGCACACATGAAAGCTTCGAGCTTCTGGAGGACC
CGCGTGCCGAGAAGGTCGACGCGCTGGTCGCCGCATTGGGCCTGACTAAG
GTCGGGTGGATTTTCGCCCATCCCCCGCGCGAAGAAGGCTTTATATTTTC
CGGTTTGGAAGTCATGCTGGCCGCGATGGGTCAGCTTGAGGCCGCCGATG
GGGTGAAAGAAACGCCTTTTGTCACTGTGCGAGTCTCGTTGGCGCCGGCG
GAGAAGGTGGAGGGGGAGGAAGGGAAGGAAGGAGGGCCGACGGCGCCATC
GGTTGCGCATTTCGATGCCTTCCAAGTGAGTTTGCAGTGTATGGAGATGG
TGGCAGAAGGTGCGGTGGAACCCGGGGAGGAGCCAGGCTCCATGCACGTG
AACGAGTCCTTCACCGCGATTGTGGAGGGTCGTGCTGCCAAGACAGTGGA
CAACAACTTCTTTTTGGTGAATGTCCCCGTAGGGAGCGAAGAGAGCAAGT
TGTTTTTATCCCAATACCCCAAGTGGAACCGACTGGATGAGCTCCCGGAC
GCCAAGACTATGGCTGCACAATTATCACAAGCGGGTAAGGCCGGATGGCG
GTTTGTGGACTTGTTGGGCGATTTCCATTTGTTGTTGTTTCTGGCGGAGT
TCTTGGATATGAGCGAGATGGAGGTGGTGTGTGCGAGTGTGCGGGATAAA
GAGAGTGTGCCGTTAGGAGAAGGTCACGTGGCGCTGATCCGGGCGATTGC
AGGGATGGATTGAATGTGAGGGATAGGGAGAAAAGAGGGAGAGGAGGCAG
AGATCAAAGAAGGAAAGAAGACGAATGAGAATGGAGCGGTGCTTGATTCA
TATGATGGTAGCGCATTTCGAGTAAAATGCAAGCACTTCTATTGTTGGAG
AGTTTTCGTTCCATTTCGAGGGAAAAAGCATTCAATGCGTATTTCCAAAA
TCATTTCCGCATCATAAGTCGACTCATGGTGATAGCGGGGAACGCCACGA
CTGCTGGTGTGGAAAATCTCTCAACTCTATCACCAATTAAACGCATGCAC
ATAGACGAGAAAGATAGAGCCTTTCAGACATATTTGTTTCGTTCTCTTTT
CAAGTAGTAGTATCGCCCGCCTCAATGTTGTTGTCCGCATTGCGGTGCGT
GTTACTTTGGGTCTCAACTGATGCCACCCAGCCCTGCTTTCCCGTGCCTT
TCACCCCTCAGCCCCTCTTCACCCTCTTCCCTCAATACCTCCTCCCTCCT
CGCTCCCTACTTCGGCTTCGACTCCTATCCCTCCCTCCCCGTCCGTTATC
TCGATCTCTCCCCCTTTCCCTATACCTGTCCCCTCCACCACGCTCCCTCT
CTCTATCTTCACGATAATCCC back to topCoding sequence (CDS) from alignment at scaffold_16:216588..219258- >mRNA_7068 ID=mRNA_7068|Name=jgi.p|Nanoce1779_2|557471|organism=Nannochloropsis oceanica|type=CDS|length=4032bp|location=Sequence derived from alignment at scaffold_16:216588..219258- (Nannochloropsis oceanica)
GCACACATGAAAGCTTCGAGCTTCTGGAGGACCCGCGTGCCGAGAAGGTC
GACGCGCTGGTCGCCGCATTGGGCCTGACTAAGGTCGGGTGGATTTTCGC
CCATCCCCCGCGCGAAGAAGGCTTTATATTTTCCGGTTTGGAAGTCATGC
TGGCCGCGATGGGTCAGCTTGAGGCCGCCGATGGGGTGAAAGAAACGCCT
TTTGTCACTGTGCGAGTCTCGTTGGCGCCGGCGGAGAAGGTGGAGGGGGA
GGAAGGGAAGGAAGGAGGGCCGACGGCGCCATCGGTTGCGCATTTCGATG
CCTTCCAAGTGAGTTTGCAGTGTATGGAGATGGTGGCAGAAGGTGCGGTG
GAACCCGGGGAGGAGCCAGGCTCCATGCACGTGAACGAGTCCTTCACCGC
GATTGTGGAGGGTCGTGCTGCCAAGACAGTGGACAACAACTTCTTTTTGG
TGAATGTCCCCGTAGGGAGCGAAGAGAGCAAGTTGTTTTTATCCCAATAC
CCCAAGTGGAACCGACTGGATGAGCTCCCGGACGCCAAGACTATGGCTGC
ACAATTATCACAAGCGGGTAAGGCCGGATGGCGGTTTGTGGACTTGTTGG
GCGATTTCCATTTGTTGTTGTTTCTGGCGGAGTTCTTGGATATGAGCGAG
ATGGAGGTGGTGTGTGCGAGTGTGCGGGATAAAGAGAGTGTGCCGTTAGG
AGAAGGTCACGTGGCGCTGATCCGGGCGATTGCAGGGATGGATTGATCCT
ACATGCGCCGCTTGGGGTTCAACCAGTGCCGTGTAGGCTACCTCTACGGC
ACATTTACGGATGCGAAGGAGGCCAAGGTTGAGGTACTGTACGAGCCGCC
GCAAGAAGATGCTTCTGCGCGTGCGCAGTAAGGTGGGCACCTGGCGTGTG
GAAGGCGTCGGGCCCGAATTGACAGTTGCCGCGTTGAGAAACCGTGTCCT
GGCAGAGCATGGTGTGACTCCTCACCCTTCTCAGATCTTCAGTCTTGACC
CGGCGGGGAAGCGGGTGATGGAGGATGGGCAGACGGTGGCAATGTTGGGC
TTAAAGCATGGGGATTTGGTGCATTTGGCGATTCGGGAAGAGGATTGTGC
GCACGAGGCTGGAAAAAAAATCGCTGCGGATGGGAGTATTGTGAACAAGA
CACATTTGGAGGCGTCCCGTGAGAGGGGATTTCGGCCAGGGATGATGTCT
TTAAGGAGCATGAAGATGCACTGGACATTGACGGATTTCGTGGAGCTGGA
CGCGCAATTTGAGTATAAGATCAAGGCGCAGAAGAACGAGAATCCCTGGT
GCACCAAGGCCATTATGGAGCCAGCGTGCGGGAATGACTTCCAGGCACAC
ATGAAAGCTTCGAGCTTCTGGAGGACCCGCGTGCCGAGAAGGTCGACGCG
CTGGTCGCCGCATTGGGCCTGACTAAGGTCGGGTGGATTTTCGCCCATCC
CCCGCGCGAAGAAGGCTTTATATTTTCCGGTTTGGAAGTCATGCTGGCCG
CGATGGGTCAGCTTGAGGCCGCCGATGGGGTGAAAGAAACGCCTTTTGTC
ACTGTGCGAGTCTCGTTGGCGCCGGCGGAGAAGGTGGAGGGGGAGGAAGG
GAAGGAAGGAGGGCCGACGGCGCCATCGGTTGCGCATTTCGATGCCTTCC
AAGTGAGTTTGCAGTGTATGGAGATGGTGGCAGAAGGTGCGGTGGAACCC
GGGGAGGAGCCAGGCTCCATGCACGTGAACGAGTCCTTCACCGCGATTGT
GGAGGGTCGTGCTGCCAAGACAGTGGACAACAACTTCTTTTTGGTGAATG
TCCCCGTAGGGAGCGAAGAGAGCAAGTTGTTTTTATCCCAATACCCCAAG
TGGAACCGACTGGATGAGCTCCCGGACGCCAAGACTATGGCTGCACAATT
ATCACAAGCGGGTAAGGCCGGATGGCGGTTTGTGGACTTGTTGGGCGATT
TCCATTTGTTGTTGTTTCTGGCGGAGTTCTTGGATATGAGCGAGATGGAG
GTGGTGTGTGCGAGTGTGCGGGATAAAGAGAGTGTGCCGTTAGGAGAAGG
TCACGTGGCGCTGATCCGGGCGATTGCAGGGATGGATTGATCCTACATGC
GCCGCTTGGGGTTCAACCAGTGCCGTGTAGGCTACCTCTACGGCACATTT
ACGGATGCGAAGGAGGCCAAGGTTGAGGTACTGTACGAGCCGCCGCAAGA
AGATGCTTCTGCGCGTGCGCAGTAAGGTGGGCACCTGGCGTGTGGAAGGC
GTCGGGCCCGAATTGACAGTTGCCGCGTTGAGAAACCGTGTCCTGGCAGA
GCATGGTGTGACTCCTCACCCTTCTCAGATCTTCAGTCTTGACCCGGCGG
GGAAGCGGGTGATGGAGGATGGGCAGACGGTGGCAATGTTGGGCTTAAAG
CATGGGGATTTGGTGCATTTGGCGATTCGGGAAGAGGATTGTGCGCACGA
GGCTGGAAAAAAAATCGCTGCGGATGGGAGTATTGTGAACAAGACACATT
TGGAGGCGTCCCGTGAGAGGGGATTTCGGCCAGGGATGATGTCTTTAAGG
AGCATGAAGATGCACTGGACATTGACGGATTTCGTGGAGCTGGACGCGCA
ATTTGAGTATAAGATCAAGGCGCAGAAGAACGAGAATCCCTGGTGCACCA
AGGCCATTATGGAGCCAGCGTGCGGGAATGACTTCCAGGCACACATGAAA
GCTTCGAGCTTCTGGAGGACCCGCGTGCCGAGAAGGTCGACGCGCTGGTC
GCCGCATTGGGCCTGACTAAGGTCGGGTGGATTTTCGCCCATCCCCCGCG
CGAAGAAGGCTTTATATTTTCCGGTTTGGAAGTCATGCTGGCCGCGATGG
GTCAGCTTGAGGCCGCCGATGGGGTGAAAGAAACGCCTTTTGTCACTGTG
CGAGTCTCGTTGGCGCCGGCGGAGAAGGTGGAGGGGGAGGAAGGGAAGGA
AGGAGGGCCGACGGCGCCATCGGTTGCGCATTTCGATGCCTTCCAAGTGA
GTTTGCAGTGTATGGAGATGGTGGCAGAAGGTGCGGTGGAACCCGGGGAG
GAGCCAGGCTCCATGCACGTGAACGAGTCCTTCACCGCGATTGTGGAGGG
TCGTGCTGCCAAGACAGTGGACAACAACTTCTTTTTGGTGAATGTCCCCG
TAGGGAGCGAAGAGAGCAAGTTGTTTTTATCCCAATACCCCAAGTGGAAC
CGACTGGATGAGCTCCCGGACGCCAAGACTATGGCTGCACAATTATCACA
AGCGGGTAAGGCCGGATGGCGGTTTGTGGACTTGTTGGGCGATTTCCATT
TGTTGTTGTTTCTGGCGGAGTTCTTGGATATGAGCGAGATGGAGGTGGTG
TGTGCGAGTGTGCGGGATAAAGAGAGTGTGCCGTTAGGAGAAGGTCACGT
GGCGCTGATCCGGGCGATTGCAGGGATGGATTGATCCTACATGCGCCGCT
TGGGGTTCAACCAGTGCCGTGTAGGCTACCTCTACGGCACATTTACGGAT
GCGAAGGAGGCCAAGGTTGAGGTACTGTACGAGCCGCCGCAAGAAGATGC
TTCTGCGCGTGCGCAGTAAGGTGGGCACCTGGCGTGTGGAAGGCGTCGGG
CCCGAATTGACAGTTGCCGCGTTGAGAAACCGTGTCCTGGCAGAGCATGG
TGTGACTCCTCACCCTTCTCAGATCTTCAGTCTTGACCCGGCGGGGAAGC
GGGTGATGGAGGATGGGCAGACGGTGGCAATGTTGGGCTTAAAGCATGGG
GATTTGGTGCATTTGGCGATTCGGGAAGAGGATTGTGCGCACGAGGCTGG
AAAAAAAATCGCTGCGGATGGGAGTATTGTGAACAAGACACATTTGGAGG
CGTCCCGTGAGAGGGGATTTCGGCCAGGGATGATGTCTTTAAGGAGCATG
AAGATGCACTGGACATTGACGGATTTCGTGGAGCTGGACGCGCAATTTGA
GTATAAGATCAAGGCGCAGAAGAACGAGAATCCCTGGTGCACCAAGGCCA
TTATGGAGCCAGCGTGCGGGAATGACTTCCAG back to top
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