jgi.p|Nanoce1779_2|595480, mRNA_7064 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|595480
Unique Name	mRNA_7064
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1457
Alignment location	scaffold_16:205842..207983 +

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Properties


Property Name	Value
TranscriptId	595566
Track	FilteredModels2
ProteinId	595480

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_16	supercontig	scaffold_16:205842..207983 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595480	gene_7064	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595480	mRNA_7064-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7064	CDS_7064	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_16:205842..207983+
coding sequence from alignment at scaffold_16:205842..207983+

mRNA sequence

>mRNA_7064 ID=mRNA_7064|Name=jgi.p|Nanoce1779_2|595480|organism=Nannochloropsis oceanica|type=mRNA|length=1457bp
AAAAGCAGGCACGGCTGCTACGAGAGTTTCAGCGAGAAAGGGTAATTGTG
AGAGGCCTCAACCATCCCAACCTCTGTCGTCTCCACGGCGTATCAAGGAA
GGATGGGAGGGAGGGAGGGAGGGAAGGGGGGGGGGAGGTCTTGGCACTCG
TGTACGAATACATGGAGGGGGGATCGCTGGCGGCATTGCTGAGGGATAAG
GACAGGACCTACGACATGATGCAGGTGGCTCAGGATGTGGCAGAGGGAAT
GGAGTACCTCCACAGGAGGGGGGTGATGCATAGGGACTTAAAGCCGGACA
ACCTCCTCCTGGACATGCACGGCCGCTGTGTCATTGGAGATTTCGGGCTT
GTGTGTCCCACCATCTCCGAAAACGACCACACGGGCGAGACGGGCACCTA
CCGCTACATGGCCAGTGAGGTGATTCGACACGAGCCCTACTCCACCGCTG
CCGATGTATATTCGTACGGCATCGTCCTCTGGGAGCTTCTGACGCGGGAA
CAACCCTTCAGAGGCATGACCCCCATCCAAGCCGCGTTCGCCGTGGCGCG
GCAAGGCTTCCGTCCTTCCCTCCCGCCTTCCACCCCTTCCATGCTCGCGT
CACTCATTCAGGCTTGCTGGCATGAGAACGCTGTTTGTCGTCCAACCTTC
ACCCAGGTCGTGTGCGCTATCAAACACATACGACTGGAGGAAGGTGAGAG
GAGCAATGAGGGCAAGGAGGGAATGAGGTAGGTAGGGAGAGGGGGTGAGG
TAGTCGCGCCTCGCTGTTGAATTTGAATGTGTTGAGGATCCTGTCGGACG
TCGTCTTTTGCTTACGGAGATGCCGTGTGGGTCCGGGTTGGTCAGGTTGT
AGAAGAGGTGAATGGAGGGCGTGCTAGATAGAAGGGGAGGGGATCGAATC
ATTTGTGGTTGGAGGACTTTATTTAGTCTGAGGGACAGCAAAAGTTAAGA
GTGTAGCAGTGGCAGGAGCAATAGCAGTAGTGGCATCAGCAGCGGCAACA
GCAGCAGCAGCACCAGCAACACCTATGGCAATATAACCGTAGGGGATATA
CTACGAATGTGTCTAAAAAAGAGTATTATAAATCTCTACTGCAGCACTTC
CTACAGCAGCAGCAGCAGCAGCAGCAGCAGCAACGAGTAAGAAGCAGATA
AAACGTAGTTTCCTCGTGATTTATTTGTTTTAGAGTCTTTATCTGTCATT
CCAGCGGCAGCATCAGTGCGAACAGCAAGATTTAGACAGAAATTGATAGA
TGGTGAGAATACACAGTGAATAGAGCGAATATGAAAACAACGTAGAGACG
GGAAGCAGCAGTACCAGAGGCAGCAGCATTTCGAGCACCCGCACGAGCGG
TGGTGCAAAGAGGAATAAGAACATTTTTACATACGTTGCGTCAATAGAAA
AGGTACATAAAACAATTAGCAGCAGTCAGTGCAACAAAAGAACAAACCGA
CGTGAGA

protein sequence of jgi.p|Nanoce1779_2|595480

>mRNA_7064-protein ID=mRNA_7064-protein|Name=jgi.p|Nanoce1779_2|595480|organism=Nannochloropsis oceanica|type=polypeptide|length=190bp
MEGGSLAALLRDKDRTYDMMQVAQDVAEGMEYLHRRGVMHRDLKPDNLLL
DMHGRCVIGDFGLVCPTISENDHTGETGTYRYMASEVIRHEPYSTAADVY
SYGIVLWELLTREQPFRGMTPIQAAFAVARQGFRPSLPPSTPSMLASLIQ
ACWHENAVCRPTFTQVVCAIKHIRLEEGERSNEGKEGMR*

mRNA from alignment at scaffold_16:205842..207983+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7064 ID=mRNA_7064|Name=jgi.p|Nanoce1779_2|595480|organism=Nannochloropsis oceanica|type=mRNA|length=2142bp|location=Sequence derived from alignment at scaffold_16:205842..207983+ (Nannochloropsis oceanica)
AAAAGCAGGCACGGCTGCTACGAGAGTTTCAGCGAGAAAGGGTAATTGTG
AGAGGCCTCAACCATCCCAACCTCTGTCGTCTCCACGGCGTATCAAGGAA
GGATGGGAGGGAGGGAGGGAGGGAAGGGGGGGGGGAGGTCTTGGCACTCG
TGTACGAATACATGGAGGGGGGATCGCTGGCGGCATTGCTGAGGGATAAG
GACAGGACCTACGACATGATGCAGGTGGCTCAGGATGTGGCAGAGGGAAT
GGAGTACCTCCACAGGAGGGGGGTGATGCATAGGGACTTAAAGGTAAGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGTGTTTTCGGTTTTCATCA
GTCCACCCCTCTTCCCATTTTCGTTTTGCTCTCTCTCTCCCCCCCTCCCC
CTTCCCTCAACTCACTTCCCCGTTCCGTTCCAACTCATGCCATTGAAATC
CTCCCCTCCTCCGCCCCTTTCTCCCTCCCTCCCTCCCTCCCTCCCTTCCT
GTCGGACACAGCCGGACAACCTCCTCCTGGACATGCACGGCCGCTGTGTC
ATTGGAGATTTCGGGCTTGTGTGTCCCACCATCTCCGAAAACGACCACAC
GGGTACGTCCCCCCTCCTCCCCTTCCCCCTTTCCCTCCCTTCCTTCTCCC
CCCCTCAAAAGCCATGTTCCCTCCCTCCTTCGTTTCCTGCCTCACCCTAT
ATTTTGCAGACGCTCATTTGTCCATCCATTCGAGTCCTTCTCGTTCCTTC
CCTCCCTTCCTCGTATCCGGAAAAAGTCTTGCCTCCCGCTTCCACCCCCA
CGTTTTCCCAATCACACTTTCTGTTCCTTCCTTTCGTCATCTTCCCTCCT
CATCAGGCGAGACGGGCACCTACCGCTACATGGCCAGTGAGGTGATTCGA
CACGAGGTGAGAGGGAGCAGCATGAATATGTCCATCTATCAATCAATCAA
TCAATCTATCCAATCAATTGATAAATTTATCCAAAGAGGGAGGAATAAAA
ACAAGGCAACCCGGGAAGCAAGGACATATTTTCATGGCTTTGCCTGCTCT
TCACTAAAACTCATGACTCATAACTCATAACGTTTAACCCTCTCTCCCGC
CCTCCCTTCCTCCTTCCAGCCCTACTCCACCGCTGCCGATGTATATTCGT
ACGGCATCGTCCTCTGGGAGCTTCTGACGCGGGAACAACCCTTCAGAGGC
ATGACCCCCATCCAAGCCGCGTTCGCCGTGGCGCGGCAAGGCTTCCGTCC
TTCCCTCCCGCCTTCCACCCCTTCCATGCTCGCGTCACTCATTCAGGCTT
GCTGGCATGAGAACGCTGTTTGTCGTCCAACCTTCACCCAGGTCGTGTGC
GCTATCAAACACATACGACTGGAGGAAGGTGAGAGGAGCAATGAGGGCAA
GGAGGGAATGAGGTAGGTAGGGAGAGGGGGTGAGGTAGTCGCGCCTCGCT
GTTGAATTTGAATGTGTTGAGGATCCTGTCGGACGTCGTCTTTTGCTTAC
GGAGATGCCGTGTGGGTCCGGGTTGGTCAGGTTGTAGAAGAGGTGAATGG
AGGGCGTGCTAGATAGAAGGGGAGGGGATCGAATCATTTGTGGTTGGAGG
ACTTTATTTAGTCTGAGGGACAGCAAAAGTTAAGAGTGTAGCAGTGGCAG
GAGCAATAGCAGTAGTGGCATCAGCAGCGGCAACAGCAGCAGCAGCACCA
GCAACACCTATGGCAATATAACCGTAGGGGATATACTACGAATGTGTCTA
AAAAAGAGTATTATAAATCTCTACTGCAGCACTTCCTACAGCAGCAGCAG
CAGCAGCAGCAGCAGCAACGAGTAAGAAGCAGATAAAACGTAGTTTCCTC
GTGATTTATTTGTTTTAGAGTCTTTATCTGTCATTCCAGCGGCAGCATCA
GTGCGAACAGCAAGATTTAGACAGAAATTGATAGATGGTGAGAATACACA
GTGAATAGAGCGAATATGAAAACAACGTAGAGACGGGAAGCAGCAGTACC
AGAGGCAGCAGCATTTCGAGCACCCGCACGAGCGGTGGTGCAAAGAGGAA
TAAGAACATTTTTACATACGTTGCGTCAATAGAAAAGGTACATAAAACAA
TTAGCAGCAGTCAGTGCAACAAAAGAACAAACCGACGTGAGA

Coding sequence (CDS) from alignment at scaffold_16:205842..207983+

>mRNA_7064 ID=mRNA_7064|Name=jgi.p|Nanoce1779_2|595480|organism=Nannochloropsis oceanica|type=CDS|length=2280bp|location=Sequence derived from alignment at scaffold_16:205842..207983+ (Nannochloropsis oceanica)
ATGGAGGGGGGATCGCTGGCGGCATTGCTGAGGGATAAGGACAGGACCTA
CGACATGATGCAGGTGGCTCAGGATGTGGCAGAGGGAATGGAGTACCTCC
ACAGGAGGGGGGTGATGCATAGGGACTTAAAGCCGGACAACCTCCTCCTG
GACATGCACGGCCGCTGTGTCATTGGAGATTTCGGGCTTGTGTGTCCCAC
CATCTCCGAAAACGACCACACGGGCGAGACGGGCACCTACCGCTACATGG
CCAGTGAGGTGATTCGACACGAGCCCTACTCCACCGCTGCCGATGTATAT
TCGTACGGCATCGTCCTCTGGGAGCTTCTGACGCGGGAACAACCCTTCAG
AGGCATGACCCCCATCCAAGCCGCGTTCGCCGTGGCGCGGCAAGGCTTCC
GTCCTTCCCTCCCGCCTTCCACCCCTTCCATGCTCGCGTCACTCATTCAG
GCTTGCTGGCATGAGAACGCTGTTTGTCGTCCAACCTTCACCCAGGTCGT
GTGCGCTATCAAACACATACGACTGGAGGAAGGTGAGAGGAGCAATGAGG
GCAAGGAGGGAATGAGGTAGATGGAGGGGGGATCGCTGGCGGCATTGCTG
AGGGATAAGGACAGGACCTACGACATGATGCAGGTGGCTCAGGATGTGGC
AGAGGGAATGGAGTACCTCCACAGGAGGGGGGTGATGCATAGGGACTTAA
AGCCGGACAACCTCCTCCTGGACATGCACGGCCGCTGTGTCATTGGAGAT
TTCGGGCTTGTGTGTCCCACCATCTCCGAAAACGACCACACGGGCGAGAC
GGGCACCTACCGCTACATGGCCAGTGAGGTGATTCGACACGAGCCCTACT
CCACCGCTGCCGATGTATATTCGTACGGCATCGTCCTCTGGGAGCTTCTG
ACGCGGGAACAACCCTTCAGAGGCATGACCCCCATCCAAGCCGCGTTCGC
CGTGGCGCGGCAAGGCTTCCGTCCTTCCCTCCCGCCTTCCACCCCTTCCA
TGCTCGCGTCACTCATTCAGGCTTGCTGGCATGAGAACGCTGTTTGTCGT
CCAACCTTCACCCAGGTCGTGTGCGCTATCAAACACATACGACTGGAGGA
AGGTGAGAGGAGCAATGAGGGCAAGGAGGGAATGAGGTAGATGGAGGGGG
GATCGCTGGCGGCATTGCTGAGGGATAAGGACAGGACCTACGACATGATG
CAGGTGGCTCAGGATGTGGCAGAGGGAATGGAGTACCTCCACAGGAGGGG
GGTGATGCATAGGGACTTAAAGCCGGACAACCTCCTCCTGGACATGCACG
GCCGCTGTGTCATTGGAGATTTCGGGCTTGTGTGTCCCACCATCTCCGAA
AACGACCACACGGGCGAGACGGGCACCTACCGCTACATGGCCAGTGAGGT
GATTCGACACGAGCCCTACTCCACCGCTGCCGATGTATATTCGTACGGCA
TCGTCCTCTGGGAGCTTCTGACGCGGGAACAACCCTTCAGAGGCATGACC
CCCATCCAAGCCGCGTTCGCCGTGGCGCGGCAAGGCTTCCGTCCTTCCCT
CCCGCCTTCCACCCCTTCCATGCTCGCGTCACTCATTCAGGCTTGCTGGC
ATGAGAACGCTGTTTGTCGTCCAACCTTCACCCAGGTCGTGTGCGCTATC
AAACACATACGACTGGAGGAAGGTGAGAGGAGCAATGAGGGCAAGGAGGG
AATGAGGTAGATGGAGGGGGGATCGCTGGCGGCATTGCTGAGGGATAAGG
ACAGGACCTACGACATGATGCAGGTGGCTCAGGATGTGGCAGAGGGAATG
GAGTACCTCCACAGGAGGGGGGTGATGCATAGGGACTTAAAGCCGGACAA
CCTCCTCCTGGACATGCACGGCCGCTGTGTCATTGGAGATTTCGGGCTTG
TGTGTCCCACCATCTCCGAAAACGACCACACGGGCGAGACGGGCACCTAC
CGCTACATGGCCAGTGAGGTGATTCGACACGAGCCCTACTCCACCGCTGC
CGATGTATATTCGTACGGCATCGTCCTCTGGGAGCTTCTGACGCGGGAAC
AACCCTTCAGAGGCATGACCCCCATCCAAGCCGCGTTCGCCGTGGCGCGG
CAAGGCTTCCGTCCTTCCCTCCCGCCTTCCACCCCTTCCATGCTCGCGTC
ACTCATTCAGGCTTGCTGGCATGAGAACGCTGTTTGTCGTCCAACCTTCA
CCCAGGTCGTGTGCGCTATCAAACACATACGACTGGAGGAAGGTGAGAGG
AGCAATGAGGGCAAGGAGGGAATGAGGTAG

Synonyms

Publications