jgi.p|Nanoce1779_2|140067, mRNA_706 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|140067
Unique NamemRNA_706
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1467
Alignment locationscaffold_2:235970..237567 -

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Properties
Property NameValue
TranscriptId140153
TrackFilteredModels2
ProteinId140067
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:235970..237567 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|140067gene_706Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|140067mRNA_706-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_706CDS_706Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_706 ID=mRNA_706|Name=jgi.p|Nanoce1779_2|140067|organism=Nannochloropsis oceanica|type=mRNA|length=1467bp
CGCCTCTGGGGACGAGGTTCACGACGGCTCTGCAGTGTCAACGAGAACAA
AAAACGTTGTCAGCACCACTAGCATTTCTATACGATAAGTAGTGAGAGGG
GAGATCATGTCGTCGCGCCAAGGTTATAGCGCCCTGTCCGAGGAGCACTA
TGTCGATGTAGAGGCCCCCGCAGGTGCTGAAGGAGGGTCACAAGGTAAAG
AGAAAGGTCGCAAGAATGATAAGGAGGAGGAGAAGGAGGGAAAAGAAAAA
GATATGCGTGCCTCACTGTTAAACTGCGCACTCAACTCCTCTCATGTCTC
TGACACACCCCACAGTCATCAACTCCCCGGCCATTCCCACCGCCACAGTC
GCCCCCTCTCCCATTGCCGCCTCGTCGACTACGTCCTCTTCTTCTCCTCC
CCCCGGTGCTCCTGCCGCTTCCGTCAACCCCGATCTATTCCAATATCCGA
TCCGAATCCTGGACACCCAAGGCCACGAACACTCCCTCGATGGCGACAGC
CCCGCCTCCACCATCGGCGCCTTGAAACTCAAGGTCCAAACCGTCGCCGG
CGTCCCGCCCCCTCAGCAACGCCTCATCTTTGCCGGTCGCATGCTTCAAG
ACCAACAAACCCTCCAATCCTGTAACATTCAACCCGGATGTGTCATCCAT
CTCTTCGCCCGTCCACCCCCTCCCCCTCCCGGGGCTCCCGGTAGCATCGC
CAGCATCGTGGGTCCAGGCGCTCCTGGCGCTAATGGAGGAGAGGGAGGCG
TGGCGATTGGGCCTGGTACCCACTTAAATCCATTTGGGCTGCCAAGTAGT
TTTGGTGATCCAGAACTCCTTCGAAGCACACATTCAGTGAAATTGTTCTC
GTCGTGCCTAGTGGCGATATGTGCGATGCAATTGTTGTTGCTGTCGTTGC
AGCTGGTGGCAAGCTGGAGTATGGGAGGAGGAACGGAGGGAAGGGGAGGG
GAGGTGCCGCCCATTCCTGGAGGGGATGATGATAATGATGGGGTGTCGGA
AGAGAAAGGAGCGGAAGAAATAGGCGCGGTGTTCGTTTTGCAAGTGATGA
TGAACATCTTGGGGCTTTATGTGGGCTTGGTTGGGATAAGGAGCGCCAAC
ACCCTCCAGCTGCAATCAAGCAAGATCTACCTCTACGGTCTCCTGGTCGT
AGGAACAGCCTGGATGGCGACAAGGATCATATGGGCCATTAATAGTGTCA
CCAGTGGCTACGACGTGGACGTTGGCCCGACGCCTTCTTCGACTCCGCCG
GACTCCCCCTCGAATGGGACGGACGCAGGAGGGGGAGACAGTGATGGAGG
AGGGGATGTGGAGTACCAGCAGATGGATAGGGGGGAGTTGATCTATATGG
TGAGCCTAAGTTGCTTCTTATATTCGTTGGTGTGGGGTGTGTGTTTTTTC
AGGGCCAGTCAGTTTTACACGCTTGTGAGGAGGGCGAATGGGTTGGGACC
ATGAAGGGGAGGGAGGG
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protein sequence of jgi.p|Nanoce1779_2|140067

>mRNA_706-protein ID=mRNA_706-protein|Name=jgi.p|Nanoce1779_2|140067|organism=Nannochloropsis oceanica|type=polypeptide|length=387bp
MSLTHPTVINSPAIPTATVAPSPIAASSTTSSSSPPPGAPAASVNPDLFQ
YPIRILDTQGHEHSLDGDSPASTIGALKLKVQTVAGVPPPQQRLIFAGRM
LQDQQTLQSCNIQPGCVIHLFARPPPPPPGAPGSIASIVGPGAPGANGGE
GGVAIGPGTHLNPFGLPSSFGDPELLRSTHSVKLFSSCLVAICAMQLLLL
SLQLVASWSMGGGTEGRGGEVPPIPGGDDDNDGVSEEKGAEEIGAVFVLQ
VMMNILGLYVGLVGIRSANTLQLQSSKIYLYGLLVVGTAWMATRIIWAIN
SVTSGYDVDVGPTPSSTPPDSPSNGTDAGGGDSDGGGDVEYQQMDRGELI
YMVSLSCFLYSLVWGVCFFRASQFYTLVRRANGLGP*
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mRNA from alignment at scaffold_2:235970..237567-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_706 ID=mRNA_706|Name=jgi.p|Nanoce1779_2|140067|organism=Nannochloropsis oceanica|type=mRNA|length=1598bp|location=Sequence derived from alignment at scaffold_2:235970..237567- (Nannochloropsis oceanica)
CGCCTCTGGGGACGAGGTTCACGACGGCTCTGCAGTGTCAACGAGAACAA
AAAACGTTGTCAGCACCACTAGCATTTCTATACGATAAGTAGTGAGAGGG
GAGATCATGTCGTCGCGCCAAGGTTATAGCGCCCTGTCCGAGGAGCACTA
TGTCGATGTAGAGGCCCCCGCAGGTGCTGAAGGAGGGTCACAAGGTAAAG
AGAAAGGTCGCAAGAATGATAAGGAGGAGGAGAAGGAGGGAAAAGAAAAA
GATATGCGTGCCTCACTGTTAAACTGCGCACTCAACTCCTCTCATGTCTC
TGACACACCCCACAGTCATCAACTCCCCGGCCATTCCCACCGCCACAGTC
GCCCCCTCTCCCATTGCCGCCTCGTCGACTACGTCCTCTTCTTCTCCTCC
CCCCGGTGCTCCTGCCGCTTCCGTCAACCCCGATCTATTCCAATATCCGA
TCCGAATCCTGGACACCCAAGGCCACGAACACTCCCTCGATGGCGACAGC
CCCGCCTCCACCATCGGCGCCTTGAAACTCAAGGTCCAAACCGTCGCCGG
CGTCCCGCCCCCTCAGCAACGCCTCATCTTTGCCGGTCGCATGCTTCAAG
ACCAACAAACCCTCCAATCCTGTAACATTCAACCCGGATGTGTCATCCAT
CTCTTCGCCCGTCCACCCCCTCCCCCTCCCGGGGCTCCCGGTAGCATCGC
CAGCATCGTGGGTCCAGGCGCTCCTGGCGCTAATGGAGGAGAGGGAGGCG
TGGCGATTGGGCCTGGTACCCACTTAAATCCATTTGGGCTGCCAAGTAGT
TTTGGTGATCCAGAACTCCTTCGAAGCACACATTCAGTGAAATTGTTCTC
GTCGTGCCTAGTGGCGATATGTGCGATGCAATTGTTGTTGCTGTCGTTGC
AGCTGGTGGCAAGCTGGAGTATGGGAGGAGGAACGGAGGGAAGGGGAGGG
GAGGTGCCGCCCATTCCTGGAGGGGATGATGATAATGATGGGGTGTCGGA
AGAGAAAGGAGCGGAAGAAATAGGCGCGGTGTTCGTTTTGCAAGTGATGA
TGAACATCTTGGGGCTTTATGTGGGCTTGGTTGGGATAAGGAGGTGAGAA
GGGAGGAAGGAAGGAAGGGAGTGAGGAAGTAAGGGAGGGAGGGAGGGAGA
AATGGAACCAAGAAAGTGTGATTTGACTCACTCAAAGTAATGTACTCCTC
TATTTCCCCTTCTTCTCTCTACAGCGCCAACACCCTCCAGCTGCAATCAA
GCAAGATCTACCTCTACGGTCTCCTGGTCGTAGGAACAGCCTGGATGGCG
ACAAGGATCATATGGGCCATTAATAGTGTCACCAGTGGCTACGACGTGGA
CGTTGGCCCGACGCCTTCTTCGACTCCGCCGGACTCCCCCTCGAATGGGA
CGGACGCAGGAGGGGGAGACAGTGATGGAGGAGGGGATGTGGAGTACCAG
CAGATGGATAGGGGGGAGTTGATCTATATGGTGAGCCTAAGTTGCTTCTT
ATATTCGTTGGTGTGGGGTGTGTGTTTTTTCAGGGCCAGTCAGTTTTACA
CGCTTGTGAGGAGGGCGAATGGGTTGGGACCATGAAGGGGAGGGAGGG
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Coding sequence (CDS) from alignment at scaffold_2:235970..237567-

>mRNA_706 ID=mRNA_706|Name=jgi.p|Nanoce1779_2|140067|organism=Nannochloropsis oceanica|type=CDS|length=2322bp|location=Sequence derived from alignment at scaffold_2:235970..237567- (Nannochloropsis oceanica)
CGCCAACACCCTCCAGCTGCAATCAAGCAAGATCTACCTCTACGGTCTCC
TGGTCGTAGGAACAGCCTGGATGGCGACAAGGATCATATGGGCCATTAAT
AGTGTCACCAGTGGCTACGACGTGGACGTTGGCCCGACGCCTTCTTCGAC
TCCGCCGGACTCCCCCTCGAATGGGACGGACGCAGGAGGGGGAGACAGTG
ATGGAGGAGGGGATGTGGAGTACCAGCAGATGGATAGGGGGGAGTTGATC
TATATGGTGAGCCTAAGTTGCTTCTTATATTCGTTGGTGTGGGGTGTGTG
TTTTTTCAGGGCCAGTCAGTTTTACACGCTTGTGAGGAGGGCGAATGGGT
TGGGACCATGAATGTCTCTGACACACCCCACAGTCATCAACTCCCCGGCC
ATTCCCACCGCCACAGTCGCCCCCTCTCCCATTGCCGCCTCGTCGACTAC
GTCCTCTTCTTCTCCTCCCCCCGGTGCTCCTGCCGCTTCCGTCAACCCCG
ATCTATTCCAATATCCGATCCGAATCCTGGACACCCAAGGCCACGAACAC
TCCCTCGATGGCGACAGCCCCGCCTCCACCATCGGCGCCTTGAAACTCAA
GGTCCAAACCGTCGCCGGCGTCCCGCCCCCTCAGCAACGCCTCATCTTTG
CCGGTCGCATGCTTCAAGACCAACAAACCCTCCAATCCTGTAACATTCAA
CCCGGATGTGTCATCCATCTCTTCGCCCGTCCACCCCCTCCCCCTCCCGG
GGCTCCCGGTAGCATCGCCAGCATCGTGGGTCCAGGCGCTCCTGGCGCTA
ATGGAGGAGAGGGAGGCGTGGCGATTGGGCCTGGTACCCACTTAAATCCA
TTTGGGCTGCCAAGTAGTTTTGGTGATCCAGAACTCCTTCGAAGCACACA
TTCAGTGAAATTGTTCTCGTCGTGCCTAGTGGCGATATGTGCGATGCAAT
TGTTGTTGCTGTCGTTGCAGCTGGTGGCAAGCTGGAGTATGGGAGGAGGA
ACGGAGGGAAGGGGAGGGGAGGTGCCGCCCATTCCTGGAGGGGATGATGA
TAATGATGGGGTGTCGGAAGAGAAAGGAGCGGAAGAAATAGGCGCGGTGT
TCGTTTTGCAAGTGATGATGAACATCTTGGGGCTTTATGTGGGCTTGGTT
GGGATAAGGAGCGCCAACACCCTCCAGCTGCAATCAAGCAAGATCTACCT
CTACGGTCTCCTGGTCGTAGGAACAGCCTGGATGGCGACAAGGATCATAT
GGGCCATTAATAGTGTCACCAGTGGCTACGACGTGGACGTTGGCCCGACG
CCTTCTTCGACTCCGCCGGACTCCCCCTCGAATGGGACGGACGCAGGAGG
GGGAGACAGTGATGGAGGAGGGGATGTGGAGTACCAGCAGATGGATAGGG
GGGAGTTGATCTATATGGTGAGCCTAAGTTGCTTCTTATATTCGTTGGTG
TGGGGTGTGTGTTTTTTCAGGGCCAGTCAGTTTTACACGCTTGTGAGGAG
GGCGAATGGGTTGGGACCATGAATGTCTCTGACACACCCCACAGTCATCA
ACTCCCCGGCCATTCCCACCGCCACAGTCGCCCCCTCTCCCATTGCCGCC
TCGTCGACTACGTCCTCTTCTTCTCCTCCCCCCGGTGCTCCTGCCGCTTC
CGTCAACCCCGATCTATTCCAATATCCGATCCGAATCCTGGACACCCAAG
GCCACGAACACTCCCTCGATGGCGACAGCCCCGCCTCCACCATCGGCGCC
TTGAAACTCAAGGTCCAAACCGTCGCCGGCGTCCCGCCCCCTCAGCAACG
CCTCATCTTTGCCGGTCGCATGCTTCAAGACCAACAAACCCTCCAATCCT
GTAACATTCAACCCGGATGTGTCATCCATCTCTTCGCCCGTCCACCCCCT
CCCCCTCCCGGGGCTCCCGGTAGCATCGCCAGCATCGTGGGTCCAGGCGC
TCCTGGCGCTAATGGAGGAGAGGGAGGCGTGGCGATTGGGCCTGGTACCC
ACTTAAATCCATTTGGGCTGCCAAGTAGTTTTGGTGATCCAGAACTCCTT
CGAAGCACACATTCAGTGAAATTGTTCTCGTCGTGCCTAGTGGCGATATG
TGCGATGCAATTGTTGTTGCTGTCGTTGCAGCTGGTGGCAAGCTGGAGTA
TGGGAGGAGGAACGGAGGGAAGGGGAGGGGAGGTGCCGCCCATTCCTGGA
GGGGATGATGATAATGATGGGGTGTCGGAAGAGAAAGGAGCGGAAGAAAT
AGGCGCGGTGTTCGTTTTGCAAGTGATGATGAACATCTTGGGGCTTTATG
TGGGCTTGGTTGGGATAAGGAG
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Synonyms
Publications