jgi.p|Nanoce1779_2|595446, mRNA_7058 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595446
Unique NamemRNA_7058
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1693
Alignment locationscaffold_16:178950..180642 -

Link to JBrowse

Properties
Property NameValue
TranscriptId595532
TrackFilteredModels2
ProteinId595446
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:178950..180642 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595446gene_7058Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595446mRNA_7058-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7058CDS_7058Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7058 ID=mRNA_7058|Name=jgi.p|Nanoce1779_2|595446|organism=Nannochloropsis oceanica|type=mRNA|length=1693bp
GGTGTGCCTACTGCTTACGAATGCCCGAGTGCGAGAAGGCCCTGCTTGTG
TGCAACACCTGTGAGGCCTTTGCCTACTGTTCCCGCCACTGCCAAGAACA
AGACTTATCAGAACACGAGTCTGAATGTGCTAGCATTGCCCATCTGGACA
GGGTTCCACCCCCTACAATGCTCATGACAGCGCGGCTGGTCCGCCGTGTG
GGCGTCGAAGCCCTCACACGTCAAGACCCCGACAAGCGCTCCCTCTTCAG
AGCCCTCCAGCAGCTCGTCCACCACACAGACAAGGCCTCGCCCGTCCGTC
AAAAGCAATTTTTGTTTGCCGCTAATCAGATCTGTGGACTATTGGTTCTC
CCTCCCGCCCCCGCAGACATGGCCACCATCGTCGCGAAGCTAGGTGGGCC
TCGCTTTGTGGCCCGTTTACTCGCTCAAATTGGGTGCAACGCATTCACCA
TCACCGACGGGGACGCTGAAGTCCTGGGTGTCGGTCTCTTTCTTGGTGCG
GTGTCCGCAAACCACTCTTGTGACCCCAATTGCCATCAGATATTCGAGGG
TCCCTACATCCGACTAAGGGCCTTGCGCCCCATTGCGCCTGGGGAGGAAT
TGACGATTGGCTACATTGACATCAGCAACACTCGTAAACTCCGGCAAGAG
GCATTGCTGGAGGGATATGGCTTTGAATGCACCTGTTCGCGTTGTTCTTC
TTTGGAAGAACAGTGGCGGGAGACGCAGGTCGTGGGTTGGGCGTGTCCGC
GGCGAGGGTGTCTTGGGGCTTGCGTGGAGGAACCGCAGGGCGCTGCGTTG
TTCCGTGCATGGCGTGCGACTAGAGATGGTATAGTTGAGTGCAACGAATC
ACGGGCACGCGTATGTACCGCTTGTGGGGCACGCTTGGAAGTGAATGAAG
TACATAAACGGCAGGCAGACTTGGAGAAGGCGGAGCACCATAGACAGGAG
TTTGACAGACTCCTGGCGCATCGAGGCAGTCAAAAGGCCGATGCCCTGCG
GGATGCACTCAAAGAAGCTGACAAGATCTGCGACGTGTATGCCCGGTGCT
TGATTCCGCACATCTCCCTCTGTAGGTACGAGTTCATGACGCGCCTCGTC
GAAGAGTGCATCCAGTTGCAGGAGTTCGGCTTGATGATCAAGTACGGCGT
GTTGAGCTCAGCAGGCCTGGAAGCTATCAGCCCACGCCATTCACCGGCAT
CCGCATATCTGTATGCAAATTTGGGAAAGGCCTTGTTGTATATCCACGAA
CCAGCACAGGCATTAACCTACCTATGCAAGGCGATGCAGAAGTTGGAGGC
GTCGCACGGGCAAGATCACCACTACATGCGTGAGGTCGAAAGGTTGCTAA
TAGATGCGCAACACACAACTGGAAGAAAGAAGTAGAGCGGAGGACATGTC
AAATAGATGAATGCGAGCCGTGAGCTTTGAACGACGCAAAGATGTCTGTA
ACATGCCGGCACAAAGGACGGGGGACATTGGTAGAAATGCAGGAATTAGA
ATTTAACAACGAACAGTGGAGTAAGTTTTCAAAGTGACTGAAAATGGGAT
TAGCATGAGCATAAGTACATAAGCAGTGATGTGAAATAAAAGTAAATGCT
GTAAAAGTAACAACGAAAAGGATGGGGGACGGATTAGGAGGAGGTTAATT
TTTGTGGCTCCACAAAAAGATAAAGTAGAAAAATCATTCACTC
back to top

protein sequence of jgi.p|Nanoce1779_2|595446

>mRNA_7058-protein ID=mRNA_7058-protein|Name=jgi.p|Nanoce1779_2|595446|organism=Nannochloropsis oceanica|type=polypeptide|length=455bp
MPECEKALLVCNTCEAFAYCSRHCQEQDLSEHESECASIAHLDRVPPPTM
LMTARLVRRVGVEALTRQDPDKRSLFRALQQLVHHTDKASPVRQKQFLFA
ANQICGLLVLPPAPADMATIVAKLGGPRFVARLLAQIGCNAFTITDGDAE
VLGVGLFLGAVSANHSCDPNCHQIFEGPYIRLRALRPIAPGEELTIGYID
ISNTRKLRQEALLEGYGFECTCSRCSSLEEQWRETQVVGWACPRRGCLGA
CVEEPQGAALFRAWRATRDGIVECNESRARVCTACGARLEVNEVHKRQAD
LEKAEHHRQEFDRLLAHRGSQKADALRDALKEADKICDVYARCLIPHISL
CRYEFMTRLVEECIQLQEFGLMIKYGVLSSAGLEAISPRHSPASAYLYAN
LGKALLYIHEPAQALTYLCKAMQKLEASHGQDHHYMREVERLLIDAQHTT
GRKK*
back to top

mRNA from alignment at scaffold_16:178950..180642-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7058 ID=mRNA_7058|Name=jgi.p|Nanoce1779_2|595446|organism=Nannochloropsis oceanica|type=mRNA|length=1693bp|location=Sequence derived from alignment at scaffold_16:178950..180642- (Nannochloropsis oceanica)
GGTGTGCCTACTGCTTACGAATGCCCGAGTGCGAGAAGGCCCTGCTTGTG
TGCAACACCTGTGAGGCCTTTGCCTACTGTTCCCGCCACTGCCAAGAACA
AGACTTATCAGAACACGAGTCTGAATGTGCTAGCATTGCCCATCTGGACA
GGGTTCCACCCCCTACAATGCTCATGACAGCGCGGCTGGTCCGCCGTGTG
GGCGTCGAAGCCCTCACACGTCAAGACCCCGACAAGCGCTCCCTCTTCAG
AGCCCTCCAGCAGCTCGTCCACCACACAGACAAGGCCTCGCCCGTCCGTC
AAAAGCAATTTTTGTTTGCCGCTAATCAGATCTGTGGACTATTGGTTCTC
CCTCCCGCCCCCGCAGACATGGCCACCATCGTCGCGAAGCTAGGTGGGCC
TCGCTTTGTGGCCCGTTTACTCGCTCAAATTGGGTGCAACGCATTCACCA
TCACCGACGGGGACGCTGAAGTCCTGGGTGTCGGTCTCTTTCTTGGTGCG
GTGTCCGCAAACCACTCTTGTGACCCCAATTGCCATCAGATATTCGAGGG
TCCCTACATCCGACTAAGGGCCTTGCGCCCCATTGCGCCTGGGGAGGAAT
TGACGATTGGCTACATTGACATCAGCAACACTCGTAAACTCCGGCAAGAG
GCATTGCTGGAGGGATATGGCTTTGAATGCACCTGTTCGCGTTGTTCTTC
TTTGGAAGAACAGTGGCGGGAGACGCAGGTCGTGGGTTGGGCGTGTCCGC
GGCGAGGGTGTCTTGGGGCTTGCGTGGAGGAACCGCAGGGCGCTGCGTTG
TTCCGTGCATGGCGTGCGACTAGAGATGGTATAGTTGAGTGCAACGAATC
ACGGGCACGCGTATGTACCGCTTGTGGGGCACGCTTGGAAGTGAATGAAG
TACATAAACGGCAGGCAGACTTGGAGAAGGCGGAGCACCATAGACAGGAG
TTTGACAGACTCCTGGCGCATCGAGGCAGTCAAAAGGCCGATGCCCTGCG
GGATGCACTCAAAGAAGCTGACAAGATCTGCGACGTGTATGCCCGGTGCT
TGATTCCGCACATCTCCCTCTGTAGGTACGAGTTCATGACGCGCCTCGTC
GAAGAGTGCATCCAGTTGCAGGAGTTCGGCTTGATGATCAAGTACGGCGT
GTTGAGCTCAGCAGGCCTGGAAGCTATCAGCCCACGCCATTCACCGGCAT
CCGCATATCTGTATGCAAATTTGGGAAAGGCCTTGTTGTATATCCACGAA
CCAGCACAGGCATTAACCTACCTATGCAAGGCGATGCAGAAGTTGGAGGC
GTCGCACGGGCAAGATCACCACTACATGCGTGAGGTCGAAAGGTTGCTAA
TAGATGCGCAACACACAACTGGAAGAAAGAAGTAGAGCGGAGGACATGTC
AAATAGATGAATGCGAGCCGTGAGCTTTGAACGACGCAAAGATGTCTGTA
ACATGCCGGCACAAAGGACGGGGGACATTGGTAGAAATGCAGGAATTAGA
ATTTAACAACGAACAGTGGAGTAAGTTTTCAAAGTGACTGAAAATGGGAT
TAGCATGAGCATAAGTACATAAGCAGTGATGTGAAATAAAAGTAAATGCT
GTAAAAGTAACAACGAAAAGGATGGGGGACGGATTAGGAGGAGGTTAATT
TTTGTGGCTCCACAAAAAGATAAAGTAGAAAAATCATTCACTC
back to top

Coding sequence (CDS) from alignment at scaffold_16:178950..180642-

>mRNA_7058 ID=mRNA_7058|Name=jgi.p|Nanoce1779_2|595446|organism=Nannochloropsis oceanica|type=CDS|length=1365bp|location=Sequence derived from alignment at scaffold_16:178950..180642- (Nannochloropsis oceanica)
ATGCCCGAGTGCGAGAAGGCCCTGCTTGTGTGCAACACCTGTGAGGCCTT
TGCCTACTGTTCCCGCCACTGCCAAGAACAAGACTTATCAGAACACGAGT
CTGAATGTGCTAGCATTGCCCATCTGGACAGGGTTCCACCCCCTACAATG
CTCATGACAGCGCGGCTGGTCCGCCGTGTGGGCGTCGAAGCCCTCACACG
TCAAGACCCCGACAAGCGCTCCCTCTTCAGAGCCCTCCAGCAGCTCGTCC
ACCACACAGACAAGGCCTCGCCCGTCCGTCAAAAGCAATTTTTGTTTGCC
GCTAATCAGATCTGTGGACTATTGGTTCTCCCTCCCGCCCCCGCAGACAT
GGCCACCATCGTCGCGAAGCTAGGTGGGCCTCGCTTTGTGGCCCGTTTAC
TCGCTCAAATTGGGTGCAACGCATTCACCATCACCGACGGGGACGCTGAA
GTCCTGGGTGTCGGTCTCTTTCTTGGTGCGGTGTCCGCAAACCACTCTTG
TGACCCCAATTGCCATCAGATATTCGAGGGTCCCTACATCCGACTAAGGG
CCTTGCGCCCCATTGCGCCTGGGGAGGAATTGACGATTGGCTACATTGAC
ATCAGCAACACTCGTAAACTCCGGCAAGAGGCATTGCTGGAGGGATATGG
CTTTGAATGCACCTGTTCGCGTTGTTCTTCTTTGGAAGAACAGTGGCGGG
AGACGCAGGTCGTGGGTTGGGCGTGTCCGCGGCGAGGGTGTCTTGGGGCT
TGCGTGGAGGAACCGCAGGGCGCTGCGTTGTTCCGTGCATGGCGTGCGAC
TAGAGATGGTATAGTTGAGTGCAACGAATCACGGGCACGCGTATGTACCG
CTTGTGGGGCACGCTTGGAAGTGAATGAAGTACATAAACGGCAGGCAGAC
TTGGAGAAGGCGGAGCACCATAGACAGGAGTTTGACAGACTCCTGGCGCA
TCGAGGCAGTCAAAAGGCCGATGCCCTGCGGGATGCACTCAAAGAAGCTG
ACAAGATCTGCGACGTGTATGCCCGGTGCTTGATTCCGCACATCTCCCTC
TGTAGGTACGAGTTCATGACGCGCCTCGTCGAAGAGTGCATCCAGTTGCA
GGAGTTCGGCTTGATGATCAAGTACGGCGTGTTGAGCTCAGCAGGCCTGG
AAGCTATCAGCCCACGCCATTCACCGGCATCCGCATATCTGTATGCAAAT
TTGGGAAAGGCCTTGTTGTATATCCACGAACCAGCACAGGCATTAACCTA
CCTATGCAAGGCGATGCAGAAGTTGGAGGCGTCGCACGGGCAAGATCACC
ACTACATGCGTGAGGTCGAAAGGTTGCTAATAGATGCGCAACACACAACT
GGAAGAAAGAAGTAG
back to top
Synonyms
Publications