jgi.p|Nanoce1779_2|595444, mRNA_7057 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595444
Unique NamemRNA_7057
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1086
Alignment locationscaffold_16:177221..178609 -

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Properties
Property NameValue
TranscriptId595530
TrackFilteredModels2
ProteinId595444
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:177221..178609 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595444gene_7057Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595444mRNA_7057-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7057CDS_7057Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7057 ID=mRNA_7057|Name=jgi.p|Nanoce1779_2|595444|organism=Nannochloropsis oceanica|type=mRNA|length=1086bp
AATAGTCACAGGCTCAAAGAACTTCTCCTCGCCCTGTCAACCAGCCCTCC
CCTCTCCTCTCATCTACCACCAATCAGTCAGCCATGTTCCTAACCCGCAG
CGAATACGACCGAGGGGTCAACACCTTCTCTCCCGAAGGCCGGTTGTTCC
AAGTTGAGTACGCTATTGAGGCCATCAAGCTAGGGTCTACAGCCGTGGGG
GTCTGCACCAAACATGGCGTCATCCTCGCTGTGGAAAAGCGCATTTCCTC
GCCCCTGCTGGAACCGACGAGCGTGGAGAAGATTATGGAGGTTGATTCCC
ATATTGGTGCTGCCATGTCGGGCTTGATGCCTGATGCCAGAACGTTGGTG
GACCATGCTCGGGTGGAGGCGCAGAATCATCGATTTAGTTACAACGAGCC
TATCCGGGTGGAGGCCCTGACACAAGGCATATGTGACCTGGCCCTCAACT
TCGCCGAAGATGGAGAAGAGAAGAAGATGAGCCGTCCCTTCGGTGTGGCG
CTCTTGCTGGCTGGGTATGATGACAAGGGGCCCCAACTGTTTTTTTCGGA
CCCCTCCGGAACGTTTACTCAGTTCAAGGCCAAGGCGATTGGTTCGGGTT
CGGAAGGCGCGCAAACGAATCTGCAAGAGAGCTACAGTGACTCCTTCACG
CTAGAGGAGGCGGAAAATCTGGCCTTGTCGACATTGAAGCAAGTGATGGA
GGAGAAGATTAGCGCCGACTACGTGGAGGTGGCGAGTGTAACGAAGGAGG
GATTCAAGAGCTACGGGAAGGACGCACTGGACGCCATTCTGGCTAGGATC
TAGGAGGGATGGAGGGAAGGTCGGGAGGAGGCAGTGGTGGAGAGGTAGTG
GGAAGAATCATGAAGCGGGTTAAAGAAGAAAAAGATGACGAAGGGCTTTG
GTGTCTGTCTTGCTTTTTGATGGAATGCATTTCTGTGCGGAAGGAGTGAG
GGGAGGGGAAAGGAGTCAAGTGCGTCGTTTGTTTTCGTCGAGGTTTTGGA
ATAATGTGGTGTGGTGTATGTGGTAAGTATTCAAAATAGTCTCTTGGCGT
CATTTCGTCTCGCCTCCTTTGTGGCGGTTGGTGAAG
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protein sequence of jgi.p|Nanoce1779_2|595444

>mRNA_7057-protein ID=mRNA_7057-protein|Name=jgi.p|Nanoce1779_2|595444|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAVGVCTKHGVILAV
EKRISSPLLEPTSVEKIMEVDSHIGAAMSGLMPDARTLVDHARVEAQNHR
FSYNEPIRVEALTQGICDLALNFAEDGEEKKMSRPFGVALLLAGYDDKGP
QLFFSDPSGTFTQFKAKAIGSGSEGAQTNLQESYSDSFTLEEAENLALST
LKQVMEEKISADYVEVASVTKEGFKSYGKDALDAILARI*
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mRNA from alignment at scaffold_16:177221..178609-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7057 ID=mRNA_7057|Name=jgi.p|Nanoce1779_2|595444|organism=Nannochloropsis oceanica|type=mRNA|length=1389bp|location=Sequence derived from alignment at scaffold_16:177221..178609- (Nannochloropsis oceanica)
AATAGTCACAGGCTCAAAGAACTTCTCCTCGCCCTGTCAACCAGCCCTCC
CCTCTCCTCTCATCTACCACCAATCAGTCAGCCATGTTCCTAACCCGCAG
CGAATACGACCGAGGGGTCAACACCTTCTCTCCCGAAGGCCGGTTGTTCC
AAGTTGAGTACGCTATTGAGGCCATCAAGCTAGGGTCTACAGCCGTGGGG
GTCTGCACCAAACATGGCGTCATCCTCGCTGTGGAAAAGCGCATTTCCTC
GCCCCTGCTGGAACCGACGAGCGTGGAGAAGATTATGGAGGTTGATTCCC
ATATTGGTGCTGCCATGTCGGGCTTGATGCCTGATGCCAGAACGTTGGTG
GACCATGCTCGGGTGGAGGCGCAGAATCATCGATTTAGGTACTGTGAAGG
GAGAAAAGGGTGGGGAGGAGAGAAAACGTGCGCAAGGACTTGATGCGGGA
AAGTCTCGTTGACGATGACGATGTTGAAATATGCCACTGGTTGAGGTGGT
TGGTTTTCGGTCGCTCGCGCTCCCCTTTGACCCGATCCCTCCCTCCCTTC
CTTCCTCCCTCCTCCCGCCTCTCCCGATAGTTACAACGAGCCTATCCGGG
TGGAGGCCCTGACACAAGGCATATGTGACCTGGCCCTCAACTTCGCCGAA
GATGGAGAAGAGAAGAAGATGAGCCGTCCCTTCGGTGTGGCGCTCTTGCT
GGCTGGGTATGATGACAAGGGGCCCCAACTGTTTTTTTCGGACCCCTCCG
GAACGTTTACTCAGTTCAAGGCCAAGGTATGCCTTTCTCGCCATCCCCCC
TTCCTTCCCTCCTTCCCTCATCCCTTTTTCCTGCCTTTGATACGTGTGAA
ATTTCATCCTCCCCCTACCCCTTTCTCACCTTCGTAGGCGATTGGTTCGG
GTTCGGAAGGCGCGCAAACGAATCTGCAAGAGAGCTACAGTGACTCCTTC
ACGCTAGAGGAGGCGGAAAATCTGGCCTTGTCGACATTGAAGCAAGTGAT
GGAGGAGAAGATTAGCGCCGACTACGTGGAGGTGGCGAGTGTAACGAAGG
AGGGATTCAAGAGCTACGGGAAGGACGCACTGGACGCCATTCTGGCTAGG
ATCTAGGAGGGATGGAGGGAAGGTCGGGAGGAGGCAGTGGTGGAGAGGTA
GTGGGAAGAATCATGAAGCGGGTTAAAGAAGAAAAAGATGACGAAGGGCT
TTGGTGTCTGTCTTGCTTTTTGATGGAATGCATTTCTGTGCGGAAGGAGT
GAGGGGAGGGGAAAGGAGTCAAGTGCGTCGTTTGTTTTCGTCGAGGTTTT
GGAATAATGTGGTGTGGTGTATGTGGTAAGTATTCAAAATAGTCTCTTGG
CGTCATTTCGTCTCGCCTCCTTTGTGGCGGTTGGTGAAG
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Coding sequence (CDS) from alignment at scaffold_16:177221..178609-

>mRNA_7057 ID=mRNA_7057|Name=jgi.p|Nanoce1779_2|595444|organism=Nannochloropsis oceanica|type=CDS|length=2160bp|location=Sequence derived from alignment at scaffold_16:177221..178609- (Nannochloropsis oceanica)
GCGATTGGTTCGGGTTCGGAAGGCGCGCAAACGAATCTGCAAGAGAGCTA
CAGTGACTCCTTCACGCTAGAGGAGGCGGAAAATCTGGCCTTGTCGACAT
TGAAGCAAGTGATGGAGGAGAAGATTAGCGCCGACTACGTGGAGGTGGCG
AGTGTAACGAAGGAGGGATTCAAGAGCTACGGGAAGGACGCACTGGACGC
CATTCTGGCTAGGATCTAGTTACAACGAGCCTATCCGGGTGGAGGCCCTG
ACACAAGGCATATGTGACCTGGCCCTCAACTTCGCCGAAGATGGAGAAGA
GAAGAAGATGAGCCGTCCCTTCGGTGTGGCGCTCTTGCTGGCTGGGTATG
ATGACAAGGGGCCCCAACTGTTTTTTTCGGACCCCTCCGGAACGTTTACT
CAGTTCAAGGCCAAGATGTTCCTAACCCGCAGCGAATACGACCGAGGGGT
CAACACCTTCTCTCCCGAAGGCCGGTTGTTCCAAGTTGAGTACGCTATTG
AGGCCATCAAGCTAGGGTCTACAGCCGTGGGGGTCTGCACCAAACATGGC
GTCATCCTCGCTGTGGAAAAGCGCATTTCCTCGCCCCTGCTGGAACCGAC
GAGCGTGGAGAAGATTATGGAGGTTGATTCCCATATTGGTGCTGCCATGT
CGGGCTTGATGCCTGATGCCAGAACGTTGGTGGACCATGCTCGGGTGGAG
GCGCAGAATCATCGATTTAGGCGATTGGTTCGGGTTCGGAAGGCGCGCAA
ACGAATCTGCAAGAGAGCTACAGTGACTCCTTCACGCTAGAGGAGGCGGA
AAATCTGGCCTTGTCGACATTGAAGCAAGTGATGGAGGAGAAGATTAGCG
CCGACTACGTGGAGGTGGCGAGTGTAACGAAGGAGGGATTCAAGAGCTAC
GGGAAGGACGCACTGGACGCCATTCTGGCTAGGATCTAGTTACAACGAGC
CTATCCGGGTGGAGGCCCTGACACAAGGCATATGTGACCTGGCCCTCAAC
TTCGCCGAAGATGGAGAAGAGAAGAAGATGAGCCGTCCCTTCGGTGTGGC
GCTCTTGCTGGCTGGGTATGATGACAAGGGGCCCCAACTGTTTTTTTCGG
ACCCCTCCGGAACGTTTACTCAGTTCAAGGCCAAGATGTTCCTAACCCGC
AGCGAATACGACCGAGGGGTCAACACCTTCTCTCCCGAAGGCCGGTTGTT
CCAAGTTGAGTACGCTATTGAGGCCATCAAGCTAGGGTCTACAGCCGTGG
GGGTCTGCACCAAACATGGCGTCATCCTCGCTGTGGAAAAGCGCATTTCC
TCGCCCCTGCTGGAACCGACGAGCGTGGAGAAGATTATGGAGGTTGATTC
CCATATTGGTGCTGCCATGTCGGGCTTGATGCCTGATGCCAGAACGTTGG
TGGACCATGCTCGGGTGGAGGCGCAGAATCATCGATTTAGGCGATTGGTT
CGGGTTCGGAAGGCGCGCAAACGAATCTGCAAGAGAGCTACAGTGACTCC
TTCACGCTAGAGGAGGCGGAAAATCTGGCCTTGTCGACATTGAAGCAAGT
GATGGAGGAGAAGATTAGCGCCGACTACGTGGAGGTGGCGAGTGTAACGA
AGGAGGGATTCAAGAGCTACGGGAAGGACGCACTGGACGCCATTCTGGCT
AGGATCTAGTTACAACGAGCCTATCCGGGTGGAGGCCCTGACACAAGGCA
TATGTGACCTGGCCCTCAACTTCGCCGAAGATGGAGAAGAGAAGAAGATG
AGCCGTCCCTTCGGTGTGGCGCTCTTGCTGGCTGGGTATGATGACAAGGG
GCCCCAACTGTTTTTTTCGGACCCCTCCGGAACGTTTACTCAGTTCAAGG
CCAAGATGTTCCTAACCCGCAGCGAATACGACCGAGGGGTCAACACCTTC
TCTCCCGAAGGCCGGTTGTTCCAAGTTGAGTACGCTATTGAGGCCATCAA
GCTAGGGTCTACAGCCGTGGGGGTCTGCACCAAACATGGCGTCATCCTCG
CTGTGGAAAAGCGCATTTCCTCGCCCCTGCTGGAACCGACGAGCGTGGAG
AAGATTATGGAGGTTGATTCCCATATTGGTGCTGCCATGTCGGGCTTGAT
GCCTGATGCCAGAACGTTGGTGGACCATGCTCGGGTGGAGGCGCAGAATC
ATCGATTTAG
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Synonyms
Publications