|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 595518 |
| Track | FilteredModels2 |
| ProteinId | 595432 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_16 | supercontig | scaffold_16:168038..169478 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_7053 ID=mRNA_7053|Name=jgi.p|Nanoce1779_2|595432|organism=Nannochloropsis oceanica|type=mRNA|length=1441bp
AGCAAATCCCGAGCGCAAGCCGTGCTGACACGAATGGAGCGCGAAGTTCG
CCGGGCGGCAAAAGCAGCAGCAACAGCAACAGCAGCAGCTGAGGACGGCA
ATTTCAGCTACGCGGGGACACGAGAAGCGCTTCTTCTGGACATGCGCGAG
TACCATGTTTTGCTTCGCGCAATTTGTCGGAAAGGTCATCTGGCCTTTGC
GCACGAGATACTCAAGCACATGGCCCGCGTGGACCTCCCTCCTGATGTGA
CGGCGTACAATTACCTTATTTTGGGATACGCTGCCCAAGGGAATGCCGCA
GCGACCAATGCGCTGGTGAACGAGATGCGCCGACGAGGAGTTGAGCCGAA
CGTGTTTACCTTTATCAACCTTGTCCGTGCTTGTGCCGTGGCTGGTTGTC
CGGAACGTGCGCTTTCCATTGTGGATCCAGCGTTTTCCTGGGATTTCTAC
TCGGCTGCGATTACGATTTACCATCAGTACGGGTGTTATCCCGAAGCGGA
TTCGCTGTATCGCACCGCCGTGGTCCACGGGAAAGTCCCGGTCGATTTTT
CGCTGTTCCGTGATGAGAACTTGCTGGATTTGCACGGATTATCGGCGCCG
GTGGCGAGTGCCGCGGTGCGTTATGCCTTAGGGGAAGTGAGGGAAGAATG
GATGAGATGTGGACCGAGTGCTGTGAAGGACTTGGTGCTCATCAGTGGGT
TGGGGAAGGGGAGTCTGGTTCGTTTTAGTCCGACCCTACGACCGTTAGTT
CAAGATATGCTAGTGGAGCAATACTACCCCCCTATCGATAGTGTGACACA
GCCAGGGAATGCGGGTAGAGTGGTGGTGGCGAGAGGGAGCTTGTTGTCGT
GGCTTGAAGGGAAGGAGGCCGAGAGGAAGGGAAGGGAGGTAGGGAGGGAT
GGAAGAGAAGAAGGAAGATAGTGTACGTTAAAGTTTCCCATCAATAAGTA
GTCGGAGGAGGAGGATTAGAGAGAGGGAAAGGAAGGGGACAAGTGGAAGT
GGAAAAAAACAAAAGAAATTGAAATCGTGAAGAGGCGTACGCATGCGGCA
TCGGCGTGTCTATGTAGAGATAAACAGATAGAGAACTTGGTTTTTGGGGA
GCCTGCGTAGGCTTGGATAGGCAGACAGGCGGGGCAAACCAGATATAGCA
GCAGTAGCAGCAACAGCGACAGCAGTAGTGATAAACAAGTGGCGGAAGGG
TAGATTATAGCCTGTCTGACAGATGCAGGAAGCTGCGATGACTGAACGCG
TGACGACGGGACGCGCGGGAGAGGGGACAGAAGACAGAATCAAGCCTCTC
AAAGGTTAAGAGCGAGAGAGGAGGCGCACAGGCGCACCAATCAACAAATA
TTGCCGACAAAACGAAACGAAACAAAACGAAAGAAAACAAAACAAAATGA
GAAAAAAAAAACAAGCACGGTAAAACGAAATACAAACCAAC back to topprotein sequence of jgi.p|Nanoce1779_2|595432 >mRNA_7053-protein ID=mRNA_7053-protein|Name=jgi.p|Nanoce1779_2|595432|organism=Nannochloropsis oceanica|type=polypeptide|length=296bp
MEREVRRAAKAAATATAAAEDGNFSYAGTREALLLDMREYHVLLRAICRK
GHLAFAHEILKHMARVDLPPDVTAYNYLILGYAAQGNAAATNALVNEMRR
RGVEPNVFTFINLVRACAVAGCPERALSIVDPAFSWDFYSAAITIYHQYG
CYPEADSLYRTAVVHGKVPVDFSLFRDENLLDLHGLSAPVASAAVRYALG
EVREEWMRCGPSAVKDLVLISGLGKGSLVRFSPTLRPLVQDMLVEQYYPP
IDSVTQPGNAGRVVVARGSLLSWLEGKEAERKGREVGRDGREEGR* back to topmRNA from alignment at scaffold_16:168038..169478- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_7053 ID=mRNA_7053|Name=jgi.p|Nanoce1779_2|595432|organism=Nannochloropsis oceanica|type=mRNA|length=1441bp|location=Sequence derived from alignment at scaffold_16:168038..169478- (Nannochloropsis oceanica)
AGCAAATCCCGAGCGCAAGCCGTGCTGACACGAATGGAGCGCGAAGTTCG
CCGGGCGGCAAAAGCAGCAGCAACAGCAACAGCAGCAGCTGAGGACGGCA
ATTTCAGCTACGCGGGGACACGAGAAGCGCTTCTTCTGGACATGCGCGAG
TACCATGTTTTGCTTCGCGCAATTTGTCGGAAAGGTCATCTGGCCTTTGC
GCACGAGATACTCAAGCACATGGCCCGCGTGGACCTCCCTCCTGATGTGA
CGGCGTACAATTACCTTATTTTGGGATACGCTGCCCAAGGGAATGCCGCA
GCGACCAATGCGCTGGTGAACGAGATGCGCCGACGAGGAGTTGAGCCGAA
CGTGTTTACCTTTATCAACCTTGTCCGTGCTTGTGCCGTGGCTGGTTGTC
CGGAACGTGCGCTTTCCATTGTGGATCCAGCGTTTTCCTGGGATTTCTAC
TCGGCTGCGATTACGATTTACCATCAGTACGGGTGTTATCCCGAAGCGGA
TTCGCTGTATCGCACCGCCGTGGTCCACGGGAAAGTCCCGGTCGATTTTT
CGCTGTTCCGTGATGAGAACTTGCTGGATTTGCACGGATTATCGGCGCCG
GTGGCGAGTGCCGCGGTGCGTTATGCCTTAGGGGAAGTGAGGGAAGAATG
GATGAGATGTGGACCGAGTGCTGTGAAGGACTTGGTGCTCATCAGTGGGT
TGGGGAAGGGGAGTCTGGTTCGTTTTAGTCCGACCCTACGACCGTTAGTT
CAAGATATGCTAGTGGAGCAATACTACCCCCCTATCGATAGTGTGACACA
GCCAGGGAATGCGGGTAGAGTGGTGGTGGCGAGAGGGAGCTTGTTGTCGT
GGCTTGAAGGGAAGGAGGCCGAGAGGAAGGGAAGGGAGGTAGGGAGGGAT
GGAAGAGAAGAAGGAAGATAGTGTACGTTAAAGTTTCCCATCAATAAGTA
GTCGGAGGAGGAGGATTAGAGAGAGGGAAAGGAAGGGGACAAGTGGAAGT
GGAAAAAAACAAAAGAAATTGAAATCGTGAAGAGGCGTACGCATGCGGCA
TCGGCGTGTCTATGTAGAGATAAACAGATAGAGAACTTGGTTTTTGGGGA
GCCTGCGTAGGCTTGGATAGGCAGACAGGCGGGGCAAACCAGATATAGCA
GCAGTAGCAGCAACAGCGACAGCAGTAGTGATAAACAAGTGGCGGAAGGG
TAGATTATAGCCTGTCTGACAGATGCAGGAAGCTGCGATGACTGAACGCG
TGACGACGGGACGCGCGGGAGAGGGGACAGAAGACAGAATCAAGCCTCTC
AAAGGTTAAGAGCGAGAGAGGAGGCGCACAGGCGCACCAATCAACAAATA
TTGCCGACAAAACGAAACGAAACAAAACGAAAGAAAACAAAACAAAATGA
GAAAAAAAAAACAAGCACGGTAAAACGAAATACAAACCAAC back to topCoding sequence (CDS) from alignment at scaffold_16:168038..169478- >mRNA_7053 ID=mRNA_7053|Name=jgi.p|Nanoce1779_2|595432|organism=Nannochloropsis oceanica|type=CDS|length=888bp|location=Sequence derived from alignment at scaffold_16:168038..169478- (Nannochloropsis oceanica)
ATGGAGCGCGAAGTTCGCCGGGCGGCAAAAGCAGCAGCAACAGCAACAGC
AGCAGCTGAGGACGGCAATTTCAGCTACGCGGGGACACGAGAAGCGCTTC
TTCTGGACATGCGCGAGTACCATGTTTTGCTTCGCGCAATTTGTCGGAAA
GGTCATCTGGCCTTTGCGCACGAGATACTCAAGCACATGGCCCGCGTGGA
CCTCCCTCCTGATGTGACGGCGTACAATTACCTTATTTTGGGATACGCTG
CCCAAGGGAATGCCGCAGCGACCAATGCGCTGGTGAACGAGATGCGCCGA
CGAGGAGTTGAGCCGAACGTGTTTACCTTTATCAACCTTGTCCGTGCTTG
TGCCGTGGCTGGTTGTCCGGAACGTGCGCTTTCCATTGTGGATCCAGCGT
TTTCCTGGGATTTCTACTCGGCTGCGATTACGATTTACCATCAGTACGGG
TGTTATCCCGAAGCGGATTCGCTGTATCGCACCGCCGTGGTCCACGGGAA
AGTCCCGGTCGATTTTTCGCTGTTCCGTGATGAGAACTTGCTGGATTTGC
ACGGATTATCGGCGCCGGTGGCGAGTGCCGCGGTGCGTTATGCCTTAGGG
GAAGTGAGGGAAGAATGGATGAGATGTGGACCGAGTGCTGTGAAGGACTT
GGTGCTCATCAGTGGGTTGGGGAAGGGGAGTCTGGTTCGTTTTAGTCCGA
CCCTACGACCGTTAGTTCAAGATATGCTAGTGGAGCAATACTACCCCCCT
ATCGATAGTGTGACACAGCCAGGGAATGCGGGTAGAGTGGTGGTGGCGAG
AGGGAGCTTGTTGTCGTGGCTTGAAGGGAAGGAGGCCGAGAGGAAGGGAA
GGGAGGTAGGGAGGGATGGAAGAGAAGAAGGAAGATAG back to top
|