jgi.p|Nanoce1779_2|101128, mRNA_7051 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|101128
Unique Name	mRNA_7051
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2129
Alignment location	scaffold_16:165729..168047 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	101214
Track	FilteredModels2
ProteinId	101128

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_16	supercontig	scaffold_16:165729..168047 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|101128	gene_7051	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|101128	mRNA_7051-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7051	CDS_7051	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_16:165729..168047+
coding sequence from alignment at scaffold_16:165729..168047+

mRNA sequence

>mRNA_7051 ID=mRNA_7051|Name=jgi.p|Nanoce1779_2|101128|organism=Nannochloropsis oceanica|type=mRNA|length=2129bp
CAGCCATCGTTGAAGCAACGTCATCTCCCCAGTAATCGGAACTTTTACGA
CCTACACCGAGGGGGCACACCACACTGACCCACAACACATGAGTTCGCCT
CTCTACCCTGATCAAAGTGTGTCAGATCAACATCTCAGCCGGCTGCGTCG
TTGGACTACGTCACAAGCCTTTTCCCTCTCGCTCACCCAATTCCACTATC
CCACACATCAACACAGGCGCAGCAAGCACACAAAGCGCGTTCCCTCCATG
CGGCGCCTAAATGGTACCGCAGTCGCCGTTGACAACAAGAATGACACAAT
GGTTGACAACGACGGGCCTCTTGTCCTCTGTGTCCAGTGTGACCGCCCTA
TCATGCGCAACTACACCTCAAGCACAGGCGCCCAGAGGAGCCCTCCTCTT
CATTCTCCTTCTCTTTGTCCTCCTCATTCTACTCATGCCCCCACCTCCAT
CAGCCACGCTTCTGCGAGGGACCAACAACGATCTCCCTCCACTCACCCCT
CCACTACAACGCCGTCCCTGCTCCCCTCCCTCCCTTCCTCCAACCCCTCA
TCCGCCTCCTTCGTCATGGTTACCCGTATGGCCGATATGAGTATGTCCTT
CCTCCACGTCCAAGAAGCAGCTGCTGCTGCCATCTCTTCCCCCTCCTCCT
TCACCTCCCGTCCTTCTTCCTTCCCTTCCTCCTCCTCCTCCTCCTCCTAC
TCCTCGCACACGGGTTTATCGGAGCACTTGCGACGTGCGGAGTTCATTTT
GCAGTATGGTGCAGGCCAGGTAGACGTAAACTCCCCTGCCTGCTCTCACT
GCATGGATGTCATGGAACAAGCGTTAGACAAGGAATTAGCCCACCTGGCC
GAAGAAGAAGCCCGCTACACCTCCGTCATCGCTCACCACAGCACCACCTG
CCCTCCCTCACTCCCACCCTCCTTGACCTCAACTCGTGCCGTTATGGAGG
ACGCGGTGCAAAGACTACACGAGAAATGTGAGGTGAGCAGGGGGGAGGAA
GAGGGGCTGCGAGAGGGCTTGGCAAGACTCATGAAGGAAGAGGCAGCAGT
CGCGAGGGAGGCGAGGGCGTTTTGGAGGGCCCTGTGCGCGCATGAGGAGG
GAGGGAGGGAGGGGGAGGAAGGGAGGGAGGACGTATGGAGGGACATTGCA
AAGATTCATGCGCGAGTGACGAGTTTAGAAGCACCTGAAAATGCTCTTCT
GAGGGTCTTGCTCGAGGGAGGGGGCAGGGGTGGAGGAAGGGAAGGAGGAG
GAAGAGGAGTGTGGGATGATATATTTGTAGAGCGTGGAGGAGGGAAGGAG
GGAGGAAGGGTGGGAGGGCTGGGGGGGGAGAATATTTATACGATCAATGG
GTTTCGACTGGCGAGAAGGGAAGTACCGCGTATTGACTTGTGGTGGTCAG
AGATTAATGCTGCTTGGGGTCAGGTTGTGCTGATAGTAAATGCAGTGGCT
CACGTGGTAGGGTTTCAGGAGGGAGGGAGGGAGGAAGAGGGGGAGGGAGG
GTGGGAGAGAGGGAAGGGGAGGTATCGGGCTGTGTACGTGGGAGCGGCGT
CACGGCTGGTGCAGGACCAGGGCAGGAAAAATCAGTTGGCGTTTCCTTTG
TTTGTGGTGGGAGGGGGAGGAAGGGGAGGAAGAAAGTTGAGAGGAGGGGG
AGGGGAGGGGAAGGAGGGAAAGCAGCAGCAGCAGCACTACGGTCGGTTGG
AGGAGGGGGTGAGGAGGTTATGTCTGCTGGTGTCGGAAGTGCAGAAGTTC
GTGCTTGCGGGGGATGAGGAGGGGAGGGAGCTGGTGATGGAGAAGGAGGA
AAGGTTGTACATGCTTGATTTGACCAAGACAGGACTGAGGGATGAAACGG
CGTGGAACACAGCTGTTCAACGGCTGGTCGCGGCGTTGGGGTGGTTGGTG
CGGGCGGCGTGTGTGGGACGGCGAGGATGAGGGGGGGAGGGAGGAAGGGA
AGGAGAATGAGTTGATGTACATGTACGTGTGTATAGGTGTGTATAAATAT
TATGCTTTTGTTTAGAACAAAGGATGGATAGGGAGGCGAAAGTGAAGACA
TCTCGACAGTGAGATGCACGGTCCATGTGAGGGTGTAACATCCCCACCAT
GAAGTCCGTCCGTACTGGTGTTGGTTTGT

protein sequence of jgi.p|Nanoce1779_2|101128

>mRNA_7051-protein ID=mRNA_7051-protein|Name=jgi.p|Nanoce1779_2|101128|organism=Nannochloropsis oceanica|type=polypeptide|length=614bp
MSSPLYPDQSVSDQHLSRLRRWTTSQAFSLSLTQFHYPTHQHRRSKHTKR
VPSMRRLNGTAVAVDNKNDTMVDNDGPLVLCVQCDRPIMRNYTSSTGAQR
SPPLHSPSLCPPHSTHAPTSISHASARDQQRSPSTHPSTTTPSLLPSLPS
SNPSSASFVMVTRMADMSMSFLHVQEAAAAAISSPSSFTSRPSSFPSSSS
SSSYSSHTGLSEHLRRAEFILQYGAGQVDVNSPACSHCMDVMEQALDKEL
AHLAEEEARYTSVIAHHSTTCPPSLPPSLTSTRAVMEDAVQRLHEKCEVS
RGEEEGLREGLARLMKEEAAVAREARAFWRALCAHEEGGREGEEGREDVW
RDIAKIHARVTSLEAPENALLRVLLEGGGRGGGREGGGRGVWDDIFVERG
GGKEGGRVGGLGGENIYTINGFRLARREVPRIDLWWSEINAAWGQVVLIV
NAVAHVVGFQEGGREEEGEGGWERGKGRYRAVYVGAASRLVQDQGRKNQL
AFPLFVVGGGGRGGRKLRGGGGEGKEGKQQQQHYGRLEEGVRRLCLLVSE
VQKFVLAGDEEGRELVMEKEERLYMLDLTKTGLRDETAWNTAVQRLVAAL
GWLVRAACVGRRG*

mRNA from alignment at scaffold_16:165729..168047+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7051 ID=mRNA_7051|Name=jgi.p|Nanoce1779_2|101128|organism=Nannochloropsis oceanica|type=mRNA|length=2319bp|location=Sequence derived from alignment at scaffold_16:165729..168047+ (Nannochloropsis oceanica)
CAGCCATCGTTGAAGCAACGTCATCTCCCCAGTAATCGGAACTTTTACGA
CCTACACCGAGGGGGCACACCACACTGACCCACAACACATGAGTTCGCCT
CTCTACCCTGATCAAAGTGTGTCAGATCAACATCTCAGCCGGCTGCGTCG
TTGGACTACGTCACAAGCCTTTTCCCTCTCGCTCACCCAATTCCACTATC
CCACACATCAACACAGGCGCAGCAAGCACACAAAGCGCGTTCCCTCCATG
CGGCGCCTAAATGGTACCGCAGTCGCCGTTGACAACAAGAATGACACAAT
GGTTGACAACGACGGGCCTCTTGTCCTCTGTGTCCAGTGTGACCGCCCTA
TCATGCGCAACTACACCTCAAGCACAGGCGCCCAGAGGAGCCCTCCTCTT
CATTCTCCTTCTCTTTGTCCTCCTCATTCTACTCATGCCCCCACCTCCAT
CAGCCACGCTTCTGCGAGGGACCAACAACGATCTCCCTCCACTCACCCCT
CCACTACAACGCCGTCCCTGCTCCCCTCCCTCCCTTCCTCCAACCCCTCA
TCCGCCTCCTTCGTCATGGTTACCCGTATGGCCGATATGAGTATGTCCTT
CCTCCACGTCCAAGAAGCAGCTGCTGCTGCCATCTCTTCCCCCTCCTCCT
TCACCTCCCGTCCTTCTTCCTTCCCTTCCTCCTCCTCCTCCTCCTCCTAC
TCCTCGCACACGGGTTTATCGGAGCACTTGCGACGTGCGGAGTTCATTTT
GCAGTATGGTGCAGGCCAGGTAGACGTAAACTCCCCTGCCTGCTCTCACT
GCATGGATGTCATGGAACAAGCGTTAGACAAGGTATGTGCATCCTCCGTC
CCTCCCTCCCTTTTCTTCTTCTTCCTCTTCTTCTCCTCCTCCTCTTATTC
TACCTCCTCTCCCATCATTTCCAGCCTTGTACTCTTGTTTTCTGATTCGT
CCGTTTTGCTCCTCCAATCAACCATCCTCCACCTTTCATCATTCCCCCTC
CCCCCCTCCCTCCCTCCTGCAGGAATTAGCCCACCTGGCCGAAGAAGAAG
CCCGCTACACCTCCGTCATCGCTCACCACAGCACCACCTGCCCTCCCTCA
CTCCCACCCTCCTTGACCTCAACTCGTGCCGTTATGGAGGACGCGGTGCA
AAGACTACACGAGAAATGTGAGGTGAGCAGGGGGGAGGAAGAGGGGCTGC
GAGAGGGCTTGGCAAGACTCATGAAGGAAGAGGCAGCAGTCGCGAGGGAG
GCGAGGGCGTTTTGGAGGGCCCTGTGCGCGCATGAGGAGGGAGGGAGGGA
GGGGGAGGAAGGGAGGGAGGACGTATGGAGGGACATTGCAAAGATTCATG
CGCGAGTGACGAGTTTAGAAGCACCTGAAAATGCTCTTCTGAGGGTCTTG
CTCGAGGGAGGGGGCAGGGGTGGAGGAAGGGAAGGAGGAGGAAGAGGAGT
GTGGGATGATATATTTGTAGAGCGTGGAGGAGGGAAGGAGGGAGGAAGGG
TGGGAGGGCTGGGGGGGGAGAATATTTATACGATCAATGGGTTTCGACTG
GCGAGAAGGGAAGTACCGCGTATTGACTTGTGGTGGTCAGAGATTAATGC
TGCTTGGGGTCAGGTTGTGCTGATAGTAAATGCAGTGGCTCACGTGGTAG
GGTTTCAGGAGGGAGGGAGGGAGGAAGAGGGGGAGGGAGGGTGGGAGAGA
GGGAAGGGGAGGTATCGGGCTGTGTACGTGGGAGCGGCGTCACGGCTGGT
GCAGGACCAGGGCAGGAAAAATCAGTTGGCGTTTCCTTTGTTTGTGGTGG
GAGGGGGAGGAAGGGGAGGAAGAAAGTTGAGAGGAGGGGGAGGGGAGGGG
AAGGAGGGAAAGCAGCAGCAGCAGCACTACGGTCGGTTGGAGGAGGGGGT
GAGGAGGTTATGTCTGCTGGTGTCGGAAGTGCAGAAGTTCGTGCTTGCGG
GGGATGAGGAGGGGAGGGAGCTGGTGATGGAGAAGGAGGAAAGGTTGTAC
ATGCTTGATTTGACCAAGACAGGACTGAGGGATGAAACGGCGTGGAACAC
AGCTGTTCAACGGCTGGTCGCGGCGTTGGGGTGGTTGGTGCGGGCGGCGT
GTGTGGGACGGCGAGGATGAGGGGGGGAGGGAGGAAGGGAAGGAGAATGA
GTTGATGTACATGTACGTGTGTATAGGTGTGTATAAATATTATGCTTTTG
TTTAGAACAAAGGATGGATAGGGAGGCGAAAGTGAAGACATCTCGACAGT
GAGATGCACGGTCCATGTGAGGGTGTAACATCCCCACCATGAAGTCCGTC
CGTACTGGTGTTGGTTTGT

Coding sequence (CDS) from alignment at scaffold_16:165729..168047+

>mRNA_7051 ID=mRNA_7051|Name=jgi.p|Nanoce1779_2|101128|organism=Nannochloropsis oceanica|type=CDS|length=3684bp|location=Sequence derived from alignment at scaffold_16:165729..168047+ (Nannochloropsis oceanica)
ATGAGTTCGCCTCTCTACCCTGATCAAAGTGTGTCAGATCAACATCTCAG
CCGGCTGCGTCGTTGGACTACGTCACAAGCCTTTTCCCTCTCGCTCACCC
AATTCCACTATCCCACACATCAACACAGGCGCAGCAAGCACACAAAGCGC
GTTCCCTCCATGCGGCGCCTAAATGGTACCGCAGTCGCCGTTGACAACAA
GAATGACACAATGGTTGACAACGACGGGCCTCTTGTCCTCTGTGTCCAGT
GTGACCGCCCTATCATGCGCAACTACACCTCAAGCACAGGCGCCCAGAGG
AGCCCTCCTCTTCATTCTCCTTCTCTTTGTCCTCCTCATTCTACTCATGC
CCCCACCTCCATCAGCCACGCTTCTGCGAGGGACCAACAACGATCTCCCT
CCACTCACCCCTCCACTACAACGCCGTCCCTGCTCCCCTCCCTCCCTTCC
TCCAACCCCTCATCCGCCTCCTTCGTCATGGTTACCCGTATGGCCGATAT
GAGTATGTCCTTCCTCCACGTCCAAGAAGCAGCTGCTGCTGCCATCTCTT
CCCCCTCCTCCTTCACCTCCCGTCCTTCTTCCTTCCCTTCCTCCTCCTCC
TCCTCCTCCTACTCCTCGCACACGGGTTTATCGGAGCACTTGCGACGTGC
GGAGTTCATTTTGCAGTATGGTGCAGGCCAGGTAGACGTAAACTCCCCTG
CCTGCTCTCACTGCATGGATGTCATGGAACAAGCGTTAGACAAGGAATTA
GCCCACCTGGCCGAAGAAGAAGCCCGCTACACCTCCGTCATCGCTCACCA
CAGCACCACCTGCCCTCCCTCACTCCCACCCTCCTTGACCTCAACTCGTG
CCGTTATGGAGGACGCGGTGCAAAGACTACACGAGAAATGTGAGGTGAGC
AGGGGGGAGGAAGAGGGGCTGCGAGAGGGCTTGGCAAGACTCATGAAGGA
AGAGGCAGCAGTCGCGAGGGAGGCGAGGGCGTTTTGGAGGGCCCTGTGCG
CGCATGAGGAGGGAGGGAGGGAGGGGGAGGAAGGGAGGGAGGACGTATGG
AGGGACATTGCAAAGATTCATGCGCGAGTGACGAGTTTAGAAGCACCTGA
AAATGCTCTTCTGAGGGTCTTGCTCGAGGGAGGGGGCAGGGGTGGAGGAA
GGGAAGGAGGAGGAAGAGGAGTGTGGGATGATATATTTGTAGAGCGTGGA
GGAGGGAAGGAGGGAGGAAGGGTGGGAGGGCTGGGGGGGGAGAATATTTA
TACGATCAATGGGTTTCGACTGGCGAGAAGGGAAGTACCGCGTATTGACT
TGTGGTGGTCAGAGATTAATGCTGCTTGGGGTCAGGTTGTGCTGATAGTA
AATGCAGTGGCTCACGTGGTAGGGTTTCAGGAGGGAGGGAGGGAGGAAGA
GGGGGAGGGAGGGTGGGAGAGAGGGAAGGGGAGGTATCGGGCTGTGTACG
TGGGAGCGGCGTCACGGCTGGTGCAGGACCAGGGCAGGAAAAATCAGTTG
GCGTTTCCTTTGTTTGTGGTGGGAGGGGGAGGAAGGGGAGGAAGAAAGTT
GAGAGGAGGGGGAGGGGAGGGGAAGGAGGGAAAGCAGCAGCAGCAGCACT
ACGGTCGGTTGGAGGAGGGGGTGAGGAGGTTATGTCTGCTGGTGTCGGAA
GTGCAGAAGTTCGTGCTTGCGGGGGATGAGGAGGGGAGGGAGCTGGTGAT
GGAGAAGGAGGAAAGGTTGTACATGCTTGATTTGACCAAGACAGGACTGA
GGGATGAAACGGCGTGGAACACAGCTGTTCAACGGCTGGTCGCGGCGTTG
GGGTGGTTGGTGCGGGCGGCGTGTGTGGGACGGCGAGGATGAATGAGTTC
GCCTCTCTACCCTGATCAAAGTGTGTCAGATCAACATCTCAGCCGGCTGC
GTCGTTGGACTACGTCACAAGCCTTTTCCCTCTCGCTCACCCAATTCCAC
TATCCCACACATCAACACAGGCGCAGCAAGCACACAAAGCGCGTTCCCTC
CATGCGGCGCCTAAATGGTACCGCAGTCGCCGTTGACAACAAGAATGACA
CAATGGTTGACAACGACGGGCCTCTTGTCCTCTGTGTCCAGTGTGACCGC
CCTATCATGCGCAACTACACCTCAAGCACAGGCGCCCAGAGGAGCCCTCC
TCTTCATTCTCCTTCTCTTTGTCCTCCTCATTCTACTCATGCCCCCACCT
CCATCAGCCACGCTTCTGCGAGGGACCAACAACGATCTCCCTCCACTCAC
CCCTCCACTACAACGCCGTCCCTGCTCCCCTCCCTCCCTTCCTCCAACCC
CTCATCCGCCTCCTTCGTCATGGTTACCCGTATGGCCGATATGAGTATGT
CCTTCCTCCACGTCCAAGAAGCAGCTGCTGCTGCCATCTCTTCCCCCTCC
TCCTTCACCTCCCGTCCTTCTTCCTTCCCTTCCTCCTCCTCCTCCTCCTC
CTACTCCTCGCACACGGGTTTATCGGAGCACTTGCGACGTGCGGAGTTCA
TTTTGCAGTATGGTGCAGGCCAGGTAGACGTAAACTCCCCTGCCTGCTCT
CACTGCATGGATGTCATGGAACAAGCGTTAGACAAGGAATTAGCCCACCT
GGCCGAAGAAGAAGCCCGCTACACCTCCGTCATCGCTCACCACAGCACCA
CCTGCCCTCCCTCACTCCCACCCTCCTTGACCTCAACTCGTGCCGTTATG
GAGGACGCGGTGCAAAGACTACACGAGAAATGTGAGGTGAGCAGGGGGGA
GGAAGAGGGGCTGCGAGAGGGCTTGGCAAGACTCATGAAGGAAGAGGCAG
CAGTCGCGAGGGAGGCGAGGGCGTTTTGGAGGGCCCTGTGCGCGCATGAG
GAGGGAGGGAGGGAGGGGGAGGAAGGGAGGGAGGACGTATGGAGGGACAT
TGCAAAGATTCATGCGCGAGTGACGAGTTTAGAAGCACCTGAAAATGCTC
TTCTGAGGGTCTTGCTCGAGGGAGGGGGCAGGGGTGGAGGAAGGGAAGGA
GGAGGAAGAGGAGTGTGGGATGATATATTTGTAGAGCGTGGAGGAGGGAA
GGAGGGAGGAAGGGTGGGAGGGCTGGGGGGGGAGAATATTTATACGATCA
ATGGGTTTCGACTGGCGAGAAGGGAAGTACCGCGTATTGACTTGTGGTGG
TCAGAGATTAATGCTGCTTGGGGTCAGGTTGTGCTGATAGTAAATGCAGT
GGCTCACGTGGTAGGGTTTCAGGAGGGAGGGAGGGAGGAAGAGGGGGAGG
GAGGGTGGGAGAGAGGGAAGGGGAGGTATCGGGCTGTGTACGTGGGAGCG
GCGTCACGGCTGGTGCAGGACCAGGGCAGGAAAAATCAGTTGGCGTTTCC
TTTGTTTGTGGTGGGAGGGGGAGGAAGGGGAGGAAGAAAGTTGAGAGGAG
GGGGAGGGGAGGGGAAGGAGGGAAAGCAGCAGCAGCAGCACTACGGTCGG
TTGGAGGAGGGGGTGAGGAGGTTATGTCTGCTGGTGTCGGAAGTGCAGAA
GTTCGTGCTTGCGGGGGATGAGGAGGGGAGGGAGCTGGTGATGGAGAAGG
AGGAAAGGTTGTACATGCTTGATTTGACCAAGACAGGACTGAGGGATGAA
ACGGCGTGGAACACAGCTGTTCAACGGCTGGTCGCGGCGTTGGGGTGGTT
GGTGCGGGCGGCGTGTGTGGGACGGCGAGGATGA

Synonyms

Publications