jgi.p|Nanoce1779_2|636021, mRNA_705 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|636021
Unique NamemRNA_705
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length963
Alignment locationscaffold_2:234208..235170 +

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Properties
Property NameValue
TranscriptId636107
TrackFilteredModels2
ProteinId636021
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:234208..235170 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|636021gene_705Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|636021mRNA_705-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_705CDS_705Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_705 ID=mRNA_705|Name=jgi.p|Nanoce1779_2|636021|organism=Nannochloropsis oceanica|type=mRNA|length=963bp
ATGTCCTCCTCCAACCGACTCAAGGCTGCCGGGGGCGCTCCCTCCTCCAG
CTCTAGCCCTACCCCATCATCCCGCCTCCTTTCCTCCTCTTTACCATCAT
CGATCTCGCAAAAGAAAGCCTCACCAGTAACCTCTCGCCCTCCCTCCACG
CCCACCAAGAAGCTCCGTCCCCCCGTCCCCCTCCCCGAGCAAGACCAAAT
CTACGCCCGCTCTCTCCTTCCGCCAAAACATAAACCCACCACCCTTATCA
TCTCTGATGAAAAACGAGGCCTATGGGTCTTCGAGCAGCCCTTTGTATTG
GGTGTGGTGGATGTTAAAAACCGGATGAGTGTGTTGCGTCTCTCCAATGG
GGGTTTCGCGATTTATTCCCCCTTGGCCGCCACGCCTGAATGCATCGCAA
TGCTCCAAAATCTGATTAAAGACGAGAAACTATCGTTAAAATCAGCGTGG
TTCTTGGTGCCGAGCTCATTTCCTGAGCATCATGAGAGTCTGATCACCTG
GAGGGAGGTCTTTCCGGAAGCACGTGTGGTATCAGTTCACCCGAGAATTA
ATGTGATTGCCGAGCATCTGTTTGAGGGGTCGGGGGCGGGAGGTGCGGGG
GAGCAGTTACCGGTGGAGCTGCGGGAGGATTTAGGTGTGGGGGTCTTGCA
GACTCTATTGTTGAGGGAATTGATTGTGTGTCACAAGCCGAGTCGGACGT
TGCTTGTTTCGGATAGTGGCTTTTATATCAATGAGGAATATTCAACTAGT
CTGACAAAGGGGATGACCAAGTTACAGGGAATTTATGATAGGTTTGTGAC
CCCTCCCTTTTTCCGGCTGGGCACGGATAGGAAGGAGGGACGGGCATTGT
ATGGGAAGATTAAGGAGTGGGAATTTGATAAGATCGTGACATGTCATGCG
GAGCTTGTGCCGGAAGGGGAGGGGAAGGAGGCGTTCGTGGAGGGGTACAA
GCATCTAGCGTAA
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protein sequence of jgi.p|Nanoce1779_2|636021

>mRNA_705-protein ID=mRNA_705-protein|Name=jgi.p|Nanoce1779_2|636021|organism=Nannochloropsis oceanica|type=polypeptide|length=321bp
MSSSNRLKAAGGAPSSSSSPTPSSRLLSSSLPSSISQKKASPVTSRPPST
PTKKLRPPVPLPEQDQIYARSLLPPKHKPTTLIISDEKRGLWVFEQPFVL
GVVDVKNRMSVLRLSNGGFAIYSPLAATPECIAMLQNLIKDEKLSLKSAW
FLVPSSFPEHHESLITWREVFPEARVVSVHPRINVIAEHLFEGSGAGGAG
EQLPVELREDLGVGVLQTLLLRELIVCHKPSRTLLVSDSGFYINEEYSTS
LTKGMTKLQGIYDRFVTPPFFRLGTDRKEGRALYGKIKEWEFDKIVTCHA
ELVPEGEGKEAFVEGYKHLA*
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mRNA from alignment at scaffold_2:234208..235170+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_705 ID=mRNA_705|Name=jgi.p|Nanoce1779_2|636021|organism=Nannochloropsis oceanica|type=mRNA|length=963bp|location=Sequence derived from alignment at scaffold_2:234208..235170+ (Nannochloropsis oceanica)
ATGTCCTCCTCCAACCGACTCAAGGCTGCCGGGGGCGCTCCCTCCTCCAG
CTCTAGCCCTACCCCATCATCCCGCCTCCTTTCCTCCTCTTTACCATCAT
CGATCTCGCAAAAGAAAGCCTCACCAGTAACCTCTCGCCCTCCCTCCACG
CCCACCAAGAAGCTCCGTCCCCCCGTCCCCCTCCCCGAGCAAGACCAAAT
CTACGCCCGCTCTCTCCTTCCGCCAAAACATAAACCCACCACCCTTATCA
TCTCTGATGAAAAACGAGGCCTATGGGTCTTCGAGCAGCCCTTTGTATTG
GGTGTGGTGGATGTTAAAAACCGGATGAGTGTGTTGCGTCTCTCCAATGG
GGGTTTCGCGATTTATTCCCCCTTGGCCGCCACGCCTGAATGCATCGCAA
TGCTCCAAAATCTGATTAAAGACGAGAAACTATCGTTAAAATCAGCGTGG
TTCTTGGTGCCGAGCTCATTTCCTGAGCATCATGAGAGTCTGATCACCTG
GAGGGAGGTCTTTCCGGAAGCACGTGTGGTATCAGTTCACCCGAGAATTA
ATGTGATTGCCGAGCATCTGTTTGAGGGGTCGGGGGCGGGAGGTGCGGGG
GAGCAGTTACCGGTGGAGCTGCGGGAGGATTTAGGTGTGGGGGTCTTGCA
GACTCTATTGTTGAGGGAATTGATTGTGTGTCACAAGCCGAGTCGGACGT
TGCTTGTTTCGGATAGTGGCTTTTATATCAATGAGGAATATTCAACTAGT
CTGACAAAGGGGATGACCAAGTTACAGGGAATTTATGATAGGTTTGTGAC
CCCTCCCTTTTTCCGGCTGGGCACGGATAGGAAGGAGGGACGGGCATTGT
ATGGGAAGATTAAGGAGTGGGAATTTGATAAGATCGTGACATGTCATGCG
GAGCTTGTGCCGGAAGGGGAGGGGAAGGAGGCGTTCGTGGAGGGGTACAA
GCATCTAGCGTAA
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Coding sequence (CDS) from alignment at scaffold_2:234208..235170+

>mRNA_705 ID=mRNA_705|Name=jgi.p|Nanoce1779_2|636021|organism=Nannochloropsis oceanica|type=CDS|length=963bp|location=Sequence derived from alignment at scaffold_2:234208..235170+ (Nannochloropsis oceanica)
ATGTCCTCCTCCAACCGACTCAAGGCTGCCGGGGGCGCTCCCTCCTCCAG
CTCTAGCCCTACCCCATCATCCCGCCTCCTTTCCTCCTCTTTACCATCAT
CGATCTCGCAAAAGAAAGCCTCACCAGTAACCTCTCGCCCTCCCTCCACG
CCCACCAAGAAGCTCCGTCCCCCCGTCCCCCTCCCCGAGCAAGACCAAAT
CTACGCCCGCTCTCTCCTTCCGCCAAAACATAAACCCACCACCCTTATCA
TCTCTGATGAAAAACGAGGCCTATGGGTCTTCGAGCAGCCCTTTGTATTG
GGTGTGGTGGATGTTAAAAACCGGATGAGTGTGTTGCGTCTCTCCAATGG
GGGTTTCGCGATTTATTCCCCCTTGGCCGCCACGCCTGAATGCATCGCAA
TGCTCCAAAATCTGATTAAAGACGAGAAACTATCGTTAAAATCAGCGTGG
TTCTTGGTGCCGAGCTCATTTCCTGAGCATCATGAGAGTCTGATCACCTG
GAGGGAGGTCTTTCCGGAAGCACGTGTGGTATCAGTTCACCCGAGAATTA
ATGTGATTGCCGAGCATCTGTTTGAGGGGTCGGGGGCGGGAGGTGCGGGG
GAGCAGTTACCGGTGGAGCTGCGGGAGGATTTAGGTGTGGGGGTCTTGCA
GACTCTATTGTTGAGGGAATTGATTGTGTGTCACAAGCCGAGTCGGACGT
TGCTTGTTTCGGATAGTGGCTTTTATATCAATGAGGAATATTCAACTAGT
CTGACAAAGGGGATGACCAAGTTACAGGGAATTTATGATAGGTTTGTGAC
CCCTCCCTTTTTCCGGCTGGGCACGGATAGGAAGGAGGGACGGGCATTGT
ATGGGAAGATTAAGGAGTGGGAATTTGATAAGATCGTGACATGTCATGCG
GAGCTTGTGCCGGAAGGGGAGGGGAAGGAGGCGTTCGTGGAGGGGTACAA
GCATCTAGCGTAA
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Synonyms
Publications