jgi.p|Nanoce1779_2|595420, mRNA_7049 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|595420
Unique Name	mRNA_7049
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1637
Alignment location	scaffold_16:154716..156352 +

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Properties


Property Name	Value
TranscriptId	595506
Track	FilteredModels2
ProteinId	595420

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_16	supercontig	scaffold_16:154716..156352 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595420	gene_7049	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595420	mRNA_7049-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7049	CDS_7049	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_16:154716..156352+
coding sequence from alignment at scaffold_16:154716..156352+

mRNA sequence

>mRNA_7049 ID=mRNA_7049|Name=jgi.p|Nanoce1779_2|595420|organism=Nannochloropsis oceanica|type=mRNA|length=1637bp
ACAGCAATGAGTCCCATTTTCCCTCTTGGGAGACACGATAACAGGATAAT
AAGAGGAAGATCACAGGCAACCAGCGAGGCCACGACGACGACGACGGCGA
CATGAACTGCTGGAGCCAAGAGTTTTGGGGTTGCCGTTGTTATCAGACGT
TGCGTTTGCATGGCCCGCTCTTGCCGACGCCCAGACCCTGTCCACAGGAG
CAGCATTGCCACTGTCTTCTTGGATTTGTGTTGATCCGGTCAATCTTTGT
GTGTGGAAAGCTTGGCTGTTCTTATCGCTCCTCTCCGGTCCCAAAGAAGC
ACATAGGAATGACGGGAAGCAGGATGCAGTCAGCTCGCCCTCTGCCCCCC
CCCCCTTACACACCACCCAAGTCTTTAATTCCTTTTCCCCCCACTGCCCC
AGCTCACAGGAATCCTCTACAAAGTGAGCCGAACCTCATACGAGCTTGTG
AGAAAAAGGACAAAAAGGCGCTCAACAAAGCATTCATCAAATGCCGTCCA
CAACCAGCACCACCATTTCAACCAGAAATGGACCTTCCACCACTATCGAC
ACAACTCCAGCCTCCTCCGTCTCCTTCTCGTCCTCGTCCTCCTCCTCCGT
CCCTACCTCCGCCACCAACACCAGCCCAACCAAACATCCTGCTGCTGCGG
GCGCCACGCCCTCGCCCTCCCCTCCCAAGAGCAAACTACCCTTCAACCCC
TACCGTCACTCCCCCACTCCCTCCTCGTCCTCTATGACACCCTCCTCTTC
CCCCTCAAGGCATGATCGCCAAAAGACGAAAAGTAGCCGCAGCCCCTACC
GTCCACCCTCCCACCCTCCCTCCTCTTGCTCCTCTTTCCCCAACCCTTCC
CCTTTTCTCCCCGTCCCCTCCCCTCCACATTATCACCAGCTCCGCGCCAA
AGATGAGGAAACCGGGATTGAGGACGAGCGGGAGGGCAAGGACGACGTAG
AGGAGGACCACGAGTATTTCCGGTTGGGAAAATTTGTATATTCATTTACC
CTCCTTCTCTTTGGAACTCTGTCGATTTGTTTGTTGATCACGGGAGCTTT
AATGTTCGGAGATTTCATAGGGAAATGCCTTATGGGAGGCGGGGCGGGTT
TGGTGCTGGTGATGGCGTGTATGCTCATGTGCAGTGGGGGGGGGGAGGGT
GGAATGGAGGAGGAGGAGGAGGGAGTGAGTGAGTCGACACGATTGTTGTT
AGAAAAGGAAAAGTATAAGACGAGAGTGGGAGAGAGGGGGAGGGCGGGAA
GGAGGGATAGAAAAAACGGAGGAGGAGGGCGAGAGAAGATGTAGTGACGG
ACCCCCTTTCAGAAGAAAAAGTAATAGAAGAAGAAGGAGAAGAAGAAGGA
GGAGGGGGAGGAGGAAAGGAAGGGAAACATAACAGTGAAAGCCAGCAAAG
ACAACAACATAGAGTGTGAATTGAAATGTAATCAGTAGATAATAAATAAA
TAATATAAAAACTGGCTGGTAAGCCCGCTTTTTTGCGGGCAATGAGATGA
GTGATGTAAGATAGGTTTTGGAGTGGCAAGGTAGAGGGGAGGGCTAGAAC
ATTCTCTAGAAGAGTTCAGCACGAGTGAAAAATGGAGGAAAGACAGAAAT
CTTATGTTCAAGAAAGAAAGAATATTAGGTGACGACC

protein sequence of jgi.p|Nanoce1779_2|595420

>mRNA_7049-protein ID=mRNA_7049-protein|Name=jgi.p|Nanoce1779_2|595420|organism=Nannochloropsis oceanica|type=polypeptide|length=268bp
MPSTTSTTISTRNGPSTTIDTTPASSVSFSSSSSSSVPTSATNTSPTKHP
AAAGATPSPSPPKSKLPFNPYRHSPTPSSSSMTPSSSPSRHDRQKTKSSR
SPYRPPSHPPSSCSSFPNPSPFLPVPSPPHYHQLRAKDEETGIEDEREGK
DDVEEDHEYFRLGKFVYSFTLLLFGTLSICLLITGALMFGDFIGKCLMGG
GAGLVLVMACMLMCSGGGEGGMEEEEEGVSESTRLLLEKEKYKTRVGERG
RAGRRDRKNGGGGREKM*

mRNA from alignment at scaffold_16:154716..156352+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7049 ID=mRNA_7049|Name=jgi.p|Nanoce1779_2|595420|organism=Nannochloropsis oceanica|type=mRNA|length=1637bp|location=Sequence derived from alignment at scaffold_16:154716..156352+ (Nannochloropsis oceanica)
ACAGCAATGAGTCCCATTTTCCCTCTTGGGAGACACGATAACAGGATAAT
AAGAGGAAGATCACAGGCAACCAGCGAGGCCACGACGACGACGACGGCGA
CATGAACTGCTGGAGCCAAGAGTTTTGGGGTTGCCGTTGTTATCAGACGT
TGCGTTTGCATGGCCCGCTCTTGCCGACGCCCAGACCCTGTCCACAGGAG
CAGCATTGCCACTGTCTTCTTGGATTTGTGTTGATCCGGTCAATCTTTGT
GTGTGGAAAGCTTGGCTGTTCTTATCGCTCCTCTCCGGTCCCAAAGAAGC
ACATAGGAATGACGGGAAGCAGGATGCAGTCAGCTCGCCCTCTGCCCCCC
CCCCCTTACACACCACCCAAGTCTTTAATTCCTTTTCCCCCCACTGCCCC
AGCTCACAGGAATCCTCTACAAAGTGAGCCGAACCTCATACGAGCTTGTG
AGAAAAAGGACAAAAAGGCGCTCAACAAAGCATTCATCAAATGCCGTCCA
CAACCAGCACCACCATTTCAACCAGAAATGGACCTTCCACCACTATCGAC
ACAACTCCAGCCTCCTCCGTCTCCTTCTCGTCCTCGTCCTCCTCCTCCGT
CCCTACCTCCGCCACCAACACCAGCCCAACCAAACATCCTGCTGCTGCGG
GCGCCACGCCCTCGCCCTCCCCTCCCAAGAGCAAACTACCCTTCAACCCC
TACCGTCACTCCCCCACTCCCTCCTCGTCCTCTATGACACCCTCCTCTTC
CCCCTCAAGGCATGATCGCCAAAAGACGAAAAGTAGCCGCAGCCCCTACC
GTCCACCCTCCCACCCTCCCTCCTCTTGCTCCTCTTTCCCCAACCCTTCC
CCTTTTCTCCCCGTCCCCTCCCCTCCACATTATCACCAGCTCCGCGCCAA
AGATGAGGAAACCGGGATTGAGGACGAGCGGGAGGGCAAGGACGACGTAG
AGGAGGACCACGAGTATTTCCGGTTGGGAAAATTTGTATATTCATTTACC
CTCCTTCTCTTTGGAACTCTGTCGATTTGTTTGTTGATCACGGGAGCTTT
AATGTTCGGAGATTTCATAGGGAAATGCCTTATGGGAGGCGGGGCGGGTT
TGGTGCTGGTGATGGCGTGTATGCTCATGTGCAGTGGGGGGGGGGAGGGT
GGAATGGAGGAGGAGGAGGAGGGAGTGAGTGAGTCGACACGATTGTTGTT
AGAAAAGGAAAAGTATAAGACGAGAGTGGGAGAGAGGGGGAGGGCGGGAA
GGAGGGATAGAAAAAACGGAGGAGGAGGGCGAGAGAAGATGTAGTGACGG
ACCCCCTTTCAGAAGAAAAAGTAATAGAAGAAGAAGGAGAAGAAGAAGGA
GGAGGGGGAGGAGGAAAGGAAGGGAAACATAACAGTGAAAGCCAGCAAAG
ACAACAACATAGAGTGTGAATTGAAATGTAATCAGTAGATAATAAATAAA
TAATATAAAAACTGGCTGGTAAGCCCGCTTTTTTGCGGGCAATGAGATGA
GTGATGTAAGATAGGTTTTGGAGTGGCAAGGTAGAGGGGAGGGCTAGAAC
ATTCTCTAGAAGAGTTCAGCACGAGTGAAAAATGGAGGAAAGACAGAAAT
CTTATGTTCAAGAAAGAAAGAATATTAGGTGACGACC

Coding sequence (CDS) from alignment at scaffold_16:154716..156352+

>mRNA_7049 ID=mRNA_7049|Name=jgi.p|Nanoce1779_2|595420|organism=Nannochloropsis oceanica|type=CDS|length=804bp|location=Sequence derived from alignment at scaffold_16:154716..156352+ (Nannochloropsis oceanica)
ATGCCGTCCACAACCAGCACCACCATTTCAACCAGAAATGGACCTTCCAC
CACTATCGACACAACTCCAGCCTCCTCCGTCTCCTTCTCGTCCTCGTCCT
CCTCCTCCGTCCCTACCTCCGCCACCAACACCAGCCCAACCAAACATCCT
GCTGCTGCGGGCGCCACGCCCTCGCCCTCCCCTCCCAAGAGCAAACTACC
CTTCAACCCCTACCGTCACTCCCCCACTCCCTCCTCGTCCTCTATGACAC
CCTCCTCTTCCCCCTCAAGGCATGATCGCCAAAAGACGAAAAGTAGCCGC
AGCCCCTACCGTCCACCCTCCCACCCTCCCTCCTCTTGCTCCTCTTTCCC
CAACCCTTCCCCTTTTCTCCCCGTCCCCTCCCCTCCACATTATCACCAGC
TCCGCGCCAAAGATGAGGAAACCGGGATTGAGGACGAGCGGGAGGGCAAG
GACGACGTAGAGGAGGACCACGAGTATTTCCGGTTGGGAAAATTTGTATA
TTCATTTACCCTCCTTCTCTTTGGAACTCTGTCGATTTGTTTGTTGATCA
CGGGAGCTTTAATGTTCGGAGATTTCATAGGGAAATGCCTTATGGGAGGC
GGGGCGGGTTTGGTGCTGGTGATGGCGTGTATGCTCATGTGCAGTGGGGG
GGGGGAGGGTGGAATGGAGGAGGAGGAGGAGGGAGTGAGTGAGTCGACAC
GATTGTTGTTAGAAAAGGAAAAGTATAAGACGAGAGTGGGAGAGAGGGGG
AGGGCGGGAAGGAGGGATAGAAAAAACGGAGGAGGAGGGCGAGAGAAGAT
GTAG

Synonyms

Publications