jgi.p|Nanoce1779_2|595416, mRNA_7048 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595416
Unique NamemRNA_7048
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length810
Alignment locationscaffold_16:152565..154242 -

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Properties
Property NameValue
TranscriptId595502
TrackFilteredModels2
ProteinId595416
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:152565..154242 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595416gene_7048Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595416mRNA_7048-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7048CDS_7048Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7048 ID=mRNA_7048|Name=jgi.p|Nanoce1779_2|595416|organism=Nannochloropsis oceanica|type=mRNA|length=810bp
CAGCACTCGACATGATGACGGTCAAGGTTTGCTTCTCGAGCTTGCTGCTC
TTGGGTCTCCTCTCCTCTGCCTTGGCATTTGTGCCGCGTCAACTCGTGCG
CACGCCCCGGCAGCAACAGCGCGTGCAGGGCCGCATGCAAATGGCCTTGC
CTCAGAATGCCTTGGCATCCCTCGGCCTCCTCCTCACTGCCTCGACGGGC
CTCTACTCTCCCCCCTCGCATGCGTCCTCCCTCCCTTCCTTCTCATTGAA
CAACCAGGCGTTCACGAGCGCTACCCTGAGTAAGGAGGTAGAGGTTCGTC
AAGGCATGTATGGCGAGTACACCGTGGAGAAGACCGGGCAGCAGTTTGAG
AACGCCGAAGGGACATTTAAGACGAAGGAGGAGACCGGGGAGAACAAGAA
CAAATACGTTGCTATCCTGGCCGTGCTTTTGATCGGAAGTTGCGTCATTC
CCATGGCTCAATATTTCTGGTACGTCAAGGACGACTAAACTAGTAAGAAG
AAGCAGCATTATGTTTTGAGTGCTGAAGGAAAGGAACCATTGAGGGGTGC
GTCTGGCGTGTCTCGTCAATTTAAGTTTATGTGATAGCATTTCGGGTACG
TACTTGGCATACGAGAAGAAGGGGATAAAGCTGGTGTGTCGTGTGCGCGG
CGTGGAAAGGAGTAGCTGCATGTGTGTATATGAGGGAGAATGTGGGCACA
TATGAGGGGCAGAAGAGCGCGTGACGATTGCATCTGAAGGGGAAAGCTTT
CAAGGACAACAAGAGTAAAAAGAAAGGGATGAGCGAAAAGAAGCAGAGAT
AATCGTTGTC
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protein sequence of jgi.p|Nanoce1779_2|595416

>mRNA_7048-protein ID=mRNA_7048-protein|Name=jgi.p|Nanoce1779_2|595416|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
MMTVKVCFSSLLLLGLLSSALAFVPRQLVRTPRQQQRVQGRMQMALPQNA
LASLGLLLTASTGLYSPPSHASSLPSFSLNNQAFTSATLSKEVEVRQGMY
GEYTVEKTGQQFENAEGTFKTKEETGENKNKYVAILAVLLIGSCVIPMAQ
YFWYVKDD*
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mRNA from alignment at scaffold_16:152565..154242-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7048 ID=mRNA_7048|Name=jgi.p|Nanoce1779_2|595416|organism=Nannochloropsis oceanica|type=mRNA|length=1678bp|location=Sequence derived from alignment at scaffold_16:152565..154242- (Nannochloropsis oceanica)
CAGCACTCGACATGATGACGGTCAAGGTTTGCTTCTCGAGCTTGCTGCTC
TTGGGTCTCCTCTCCTCTGCCTTGGCATTTGTGCCGCGTCAACTCGGTAC
GTGGTTGGCTCATTCTGAGGGGCGAAAGAAAGAAGAAAGGACTTGTGCCC
GAGGTGATTGATGCCTTGATGCAAGGCGTCAGTAGAGGGCTGTGGTTAGA
GTGCCAAGCGGGTCGGCATTTGCGCTCTAGAAGCTGGCTTCGGTATTGTG
GACTGGCAGGGAGAGAGAGGGGATGAATAATCCGGCCAGATATGGGACGG
ATCGGAGGGATAATGGCTGCAAGAGTTTGAAGACACGCGCGCACTAGCCT
ACGAGGATTGATATTTTCATTTCCTTCCACCCAATTCATACACAGTGCGC
ACGCCCCGGCAGCAACAGCGCGTGCAGGGCCGCATGCAAATGGCCTTGCC
TCAGAATGCCTTGGGTAAGTGACGTGTTTGTAAGGGAAAGAAGAGCAAGG
AGGGAGGGAGATAAAGAGGGCATGCCAGTCTCTCTCTGTTTGATCTTTGC
GTTTGCTTTTTCCCCTCCTTGCCTGCTTGTATGGAGGTACATGTGAACAG
CATCATCAGATTTATGTTTTCTTTCTTTACCATCCATTTCTCCCTCACAG
CATCCCTCGGCCTCCTCCTCACTGCCTCGACGGGCCTCTACTCTCCCCCC
TCGCATGCGTCCTCCCTCCCTTCCTTCTCATTGAACAACCAGGCGTTCAC
GAGCGCTACCCTGAGTAAGGAGGTAGAGGTTCGTCAAGGCATGTATGGCG
AGTACACCGTGGAGAAGACCGGGCAGCAGGTAGGGAGGGAGGGAGGGAGG
GAGGGAGAGAGGGAGGGAGAGAGGGAATGGAGGAGGGAAGAATTGAAGGG
GTATTCTTATTTTCTGTTTACTTCTGCATGTACACTACTCTCTCGTACGC
CCTCTGATTGATCAATTATATGCTCACGTTACTGTCTACACACACGTAGT
TTGAGAACGCCGAAGGGACATTTAAGACGAAGGAGGAGACCGGGGAGAAC
AAGAACAAATACGTTGCTATCCTGGCCGTGCTTTTGATCGTAAGTATGCC
TACGAAAGGACGGAAGGAGGAGGACGCAGGGACTAAGGAAGGGTAAAATA
GAAGCGAGACGGTGTGTGTGGGATTAGTCGTGTCGCTAATTCAGTGTACA
CGTAGTGTAACGGCTGCCTCTTTTCTCTCATCCCAGCAAGATTATACCTG
CACCACTCAAGTTCTCCTCCCTACCAACTCATCACCTTTCCATCCACTAC
AGGGAAGTTGCGTCATTCCCATGGCTCAATATTTCTGGTACGTCAAGGAC
GACTAAACTAGTAAGAAGAAGCAGCATTATGTTTTGAGTGCTGAAGGAAA
GGAACCATTGAGGGGTGCGTCTGGCGTGTCTCGTCAATTTAAGTTTATGT
GATAGCATTTCGGGTACGTACTTGGCATACGAGAAGAAGGGGATAAAGCT
GGTGTGTCGTGTGCGCGGCGTGGAAAGGAGTAGCTGCATGTGTGTATATG
AGGGAGAATGTGGGCACATATGAGGGGCAGAAGAGCGCGTGACGATTGCA
TCTGAAGGGGAAAGCTTTCAAGGACAACAAGAGTAAAAAGAAAGGGATGA
GCGAAAAGAAGCAGAGATAATCGTTGTC
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Coding sequence (CDS) from alignment at scaffold_16:152565..154242-

>mRNA_7048 ID=mRNA_7048|Name=jgi.p|Nanoce1779_2|595416|organism=Nannochloropsis oceanica|type=CDS|length=2385bp|location=Sequence derived from alignment at scaffold_16:152565..154242- (Nannochloropsis oceanica)
GGAAGTTGCGTCATTCCCATGGCTCAATATTTCTGGTACGTCAAGGACGA
CTAATTTGAGAACGCCGAAGGGACATTTAAGACGAAGGAGGAGACCGGGG
AGAACAAGAACAAATACGTTGCTATCCTGGCCGTGCTTTTGATCCATCCC
TCGGCCTCCTCCTCACTGCCTCGACGGGCCTCTACTCTCCCCCCTCGCAT
GCGTCCTCCCTCCCTTCCTTCTCATTGAACAACCAGGCGTTCACGAGCGC
TACCCTGAGTAAGGAGGTAGAGGTTCGTCAAGGCATGTATGGCGAGTACA
CCGTGGAGAAGACCGGGCAGCAGTGCGCACGCCCCGGCAGCAACAGCGCG
TGCAGGGCCGCATGCAAATGGCCTTGCCTCAGAATGCCTTGGATGATGAC
GGTCAAGGTTTGCTTCTCGAGCTTGCTGCTCTTGGGTCTCCTCTCCTCTG
CCTTGGCATTTGTGCCGCGTCAACTCGGGAAGTTGCGTCATTCCCATGGC
TCAATATTTCTGGTACGTCAAGGACGACTAATTTGAGAACGCCGAAGGGA
CATTTAAGACGAAGGAGGAGACCGGGGAGAACAAGAACAAATACGTTGCT
ATCCTGGCCGTGCTTTTGATCCATCCCTCGGCCTCCTCCTCACTGCCTCG
ACGGGCCTCTACTCTCCCCCCTCGCATGCGTCCTCCCTCCCTTCCTTCTC
ATTGAACAACCAGGCGTTCACGAGCGCTACCCTGAGTAAGGAGGTAGAGG
TTCGTCAAGGCATGTATGGCGAGTACACCGTGGAGAAGACCGGGCAGCAG
TGCGCACGCCCCGGCAGCAACAGCGCGTGCAGGGCCGCATGCAAATGGCC
TTGCCTCAGAATGCCTTGGATGATGACGGTCAAGGTTTGCTTCTCGAGCT
TGCTGCTCTTGGGTCTCCTCTCCTCTGCCTTGGCATTTGTGCCGCGTCAA
CTCGGGAAGTTGCGTCATTCCCATGGCTCAATATTTCTGGTACGTCAAGG
ACGACTAATTTGAGAACGCCGAAGGGACATTTAAGACGAAGGAGGAGACC
GGGGAGAACAAGAACAAATACGTTGCTATCCTGGCCGTGCTTTTGATCCA
TCCCTCGGCCTCCTCCTCACTGCCTCGACGGGCCTCTACTCTCCCCCCTC
GCATGCGTCCTCCCTCCCTTCCTTCTCATTGAACAACCAGGCGTTCACGA
GCGCTACCCTGAGTAAGGAGGTAGAGGTTCGTCAAGGCATGTATGGCGAG
TACACCGTGGAGAAGACCGGGCAGCAGTGCGCACGCCCCGGCAGCAACAG
CGCGTGCAGGGCCGCATGCAAATGGCCTTGCCTCAGAATGCCTTGGATGA
TGACGGTCAAGGTTTGCTTCTCGAGCTTGCTGCTCTTGGGTCTCCTCTCC
TCTGCCTTGGCATTTGTGCCGCGTCAACTCGGGAAGTTGCGTCATTCCCA
TGGCTCAATATTTCTGGTACGTCAAGGACGACTAATTTGAGAACGCCGAA
GGGACATTTAAGACGAAGGAGGAGACCGGGGAGAACAAGAACAAATACGT
TGCTATCCTGGCCGTGCTTTTGATCCATCCCTCGGCCTCCTCCTCACTGC
CTCGACGGGCCTCTACTCTCCCCCCTCGCATGCGTCCTCCCTCCCTTCCT
TCTCATTGAACAACCAGGCGTTCACGAGCGCTACCCTGAGTAAGGAGGTA
GAGGTTCGTCAAGGCATGTATGGCGAGTACACCGTGGAGAAGACCGGGCA
GCAGTGCGCACGCCCCGGCAGCAACAGCGCGTGCAGGGCCGCATGCAAAT
GGCCTTGCCTCAGAATGCCTTGGATGATGACGGTCAAGGTTTGCTTCTCG
AGCTTGCTGCTCTTGGGTCTCCTCTCCTCTGCCTTGGCATTTGTGCCGCG
TCAACTCGGGAAGTTGCGTCATTCCCATGGCTCAATATTTCTGGTACGTC
AAGGACGACTAATTTGAGAACGCCGAAGGGACATTTAAGACGAAGGAGGA
GACCGGGGAGAACAAGAACAAATACGTTGCTATCCTGGCCGTGCTTTTGA
TCCATCCCTCGGCCTCCTCCTCACTGCCTCGACGGGCCTCTACTCTCCCC
CCTCGCATGCGTCCTCCCTCCCTTCCTTCTCATTGAACAACCAGGCGTTC
ACGAGCGCTACCCTGAGTAAGGAGGTAGAGGTTCGTCAAGGCATGTATGG
CGAGTACACCGTGGAGAAGACCGGGCAGCAGTGCGCACGCCCCGGCAGCA
ACAGCGCGTGCAGGGCCGCATGCAAATGGCCTTGCCTCAGAATGCCTTGG
ATGATGACGGTCAAGGTTTGCTTCTCGAGCTTGCTGCTCTTGGGTCTCCT
CTCCTCTGCCTTGGCATTTGTGCCGCGTCAACTCG
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Synonyms
Publications