jgi.p|Nanoce1779_2|672067, mRNA_7047 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|672067
Unique NamemRNA_7047
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1595
Alignment locationscaffold_16:150713..152556 -

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Properties
Property NameValue
TranscriptId672153
TrackFilteredModels2
ProteinId672067
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:150713..152556 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672067gene_7047Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672067mRNA_7047-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7047CDS_7047Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7047 ID=mRNA_7047|Name=jgi.p|Nanoce1779_2|672067|organism=Nannochloropsis oceanica|type=mRNA|length=1595bp
CAATTAGCTTGTCGTTGCTTCATTTTTCGCTTTGCTTTCGCTCTTGCATT
CGTAATAAAGGGGGAAGGAAAGGGTAGGGGAGGCCAATGAGGGCGGCAAA
TTTGAGGGTGCGTTGCTTAACTGCTGTATTGCCGTCGCATCAAAGCCAGC
CGGTGTCGACAATAGAAATGTATGCTTCATATAGTTTTGTGTTGTTTGCA
TTCGCAAGACCTACTGTCCTGCTTAGTGTCCGTGGTGTGTGGCAGATGTT
ATGTTTTTTACTCCCTTCCCTTCATACCTCTTGCATACCAACATAACAAC
CACATCGCCGCACACTCAGGCAGGCATTACATAACCCATGGTTGCAACCG
CGTCGACAAGCACCAGCATGCGCCAGGAGCCGGCTCTCGTGAAAGACACT
CTCAAACGCCTTCAAAGCCTTCCGAACGTCCAACACGTCCTCATCCTCAC
CAAGAATGGCGTGGCCTTGCGGTCGACCCTTAGTCCGGCTGCGACCGTGG
AAAAAGCTGCTCTGATAACAACCCTCTGTGAGCAAGCAACGACGGTTGTG
CAGGCCTTGGGAGAAGGCGGGAGGGAGGGCGGGAGCGAAGGAGGCGGACT
GACTTTTTTGCGGCTGTGCAGCAAAGGCTACGAAGTAATCATAACTCCTG
ACAAGGATTATTCGTTGGTGGTGGTCCGCACACGGACGGGTTGAGATAAG
TTGGGAAAGAGACAGAAGGATGTTGACAGGCCAACATTGCACATGAGAAA
TAACATCACGAACGATGGTATGTAAGGAATGCACGTGTGGACGGACGCAT
TCTTTTTTCGTTCGAGTTAGCAATGGTTTGGACAGAGTGGTCCTGCTTTC
GGTCGCTATGGTCGTCGAGTGCCTTCAGCAGGCGCAACTGCAAGCCACTT
ATTCATTCCTTCGCTGGGCTTGATCTTCAGTCATGAAATCCCCACAGGTG
TCATAGAGACCGCAATCTCATGCACGTCACTTGACCATCAGAATCATAAG
GTTCAAAAATCAATTTTAATCGAGCCACAACACCACATTCAAGGCCCCTT
TCAAGACATAACCAGACCCCATAACAGCCAATATATCACTCTATCTTGAT
TTATTTATTTGTTTTACAATTTTTATTCTACTTTCTTGTTTTTTCCTTTC
CCCCCTCCCCTGAAAACCCACGCTCCGCTGCCTTATCTACCCTACAAAAT
CGCTCCATTCGTCGACGGACGGTTGCTTTTCGAACCTCGACGCAAGAAAG
GTAGGAGCGGAGGCCGTGTTGGAGTCTGTCGGGGGAGAGCCAGGCACAGC
GATTATGTGGGGATCTGCCGGCGGAGGAGGCAATAAGGGGGCTACGATCG
AGCCTTGTTCACCGACCTTTGAGGTCGTCCGCTCCCGCTTTCTCTCCTCT
GTGCTCCCCCTGCCGCTGCCGCTGCCCTCTCCTCGATAAGGTCTGTCAAT
CGCATGCATAAAATTTAGCTTGATTTTCTCCCCTTCCTTGAGTCGCAGAT
CCCCTAGCAATGGTGGTAGGGACTTTATCTCGCCCCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTTCTCCTCCTCCTGTCCCCTCCCCC
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protein sequence of jgi.p|Nanoce1779_2|672067

>mRNA_7047-protein ID=mRNA_7047-protein|Name=jgi.p|Nanoce1779_2|672067|organism=Nannochloropsis oceanica|type=polypeptide|length=119bp
MVATASTSTSMRQEPALVKDTLKRLQSLPNVQHVLILTKNGVALRSTLSP
AATVEKAALITTLCEQATTVVQALGEGGREGGSEGGGLTFLRLCSKGYEV
IITPDKDYSLVVVRTRTG*
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mRNA from alignment at scaffold_16:150713..152556-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7047 ID=mRNA_7047|Name=jgi.p|Nanoce1779_2|672067|organism=Nannochloropsis oceanica|type=mRNA|length=1844bp|location=Sequence derived from alignment at scaffold_16:150713..152556- (Nannochloropsis oceanica)
CAATTAGCTTGTCGTTGCTTCATTTTTCGCTTTGCTTTCGCTCTTGCATT
CGTAATAAAGGGGGAAGGAAAGGGTAGGGGAGGCCAATGAGGGCGGCAAA
TTTGAGGGTGCGTTGCTTAACTGCTGTATTGCCGTCGCATCAAAGCCAGC
CGGTGTCGACAATAGAAATGTATGCTTCATATAGTTTTGTGTTGTTTGCA
TTCGCAAGACCTACTGTCCTGCTTAGTGTCCGTGGTGTGTGGCAGATGTT
ATGTTTTTTACTCCCTTCCCTTCATACCTCTTGCATACCAACATAACAAC
CACATCGCCGCACACTCAGGCAGGCATTACATAACCCATGGTTGCAACCG
CGTCGACAAGCACCAGCATGCGCCAGGAGCCGGCTCTCGTGAAAGACACT
CTCAAACGCCTTCAAAGCCTTCCGAACGTCCAACACGTCCTCATCCTCAC
CAAGAATGGCGTGGCCTTGCGGTCGACCCTTAGTCCGGTACGTGTACCGC
ACCATCGCCACGATCCTTGTATCTCTCTCTTTGGTCTGATGCTCTGATAG
AGAACGATGTGTCGATTGCGGGCGGGTGGATCATGACTGGAGGACCTTGC
ATGCCTGCTCCGCCGGTAGAGAAGTGCCTGGTCTTTTCTTTTTCCTATCT
CCATGTTGCTGTCACGTCTGTAAGGATTTTTCTTTACTCATTCCATCATT
CTTCCTGTGCTATCCACCATTTTTCCTTCAAAATAGGCTGCGACCGTGGA
AAAAGCTGCTCTGATAACAACCCTCTGTGAGCAAGCAACGACGGTTGTGC
AGGCCTTGGGAGAAGGCGGGAGGGAGGGCGGGAGCGAAGGAGGCGGACTG
ACTTTTTTGCGGCTGTGCAGCAAAGGCTACGAAGTAATCATAACTCCTGA
CAAGGATTATTCGTTGGTGGTGGTCCGCACACGGACGGGTTGAGATAAGT
TGGGAAAGAGACAGAAGGATGTTGACAGGCCAACATTGCACATGAGAAAT
AACATCACGAACGATGGTATGTAAGGAATGCACGTGTGGACGGACGCATT
CTTTTTTCGTTCGAGTTAGCAATGGTTTGGACAGAGTGGTCCTGCTTTCG
GTCGCTATGGTCGTCGAGTGCCTTCAGCAGGCGCAACTGCAAGCCACTTA
TTCATTCCTTCGCTGGGCTTGATCTTCAGTCATGAAATCCCCACAGGTGT
CATAGAGACCGCAATCTCATGCACGTCACTTGACCATCAGAATCATAAGG
TTCAAAAATCAATTTTAATCGAGCCACAACACCACATTCAAGGCCCCTTT
CAAGACATAACCAGACCCCATAACAGCCAATATATCACTCTATCTTGATT
TATTTATTTGTTTTACAATTTTTATTCTACTTTCTTGTTTTTTCCTTTCC
CCCCTCCCCTGAAAACCCACGCTCCGCTGCCTTATCTACCCTACAAAATC
GCTCCATTCGTCGACGGACGGTTGCTTTTCGAACCTCGACGCAAGAAAGG
TAGGAGCGGAGGCCGTGTTGGAGTCTGTCGGGGGAGAGCCAGGCACAGCG
ATTATGTGGGGATCTGCCGGCGGAGGAGGCAATAAGGGGGCTACGATCGA
GCCTTGTTCACCGACCTTTGAGGTCGTCCGCTCCCGCTTTCTCTCCTCTG
TGCTCCCCCTGCCGCTGCCGCTGCCCTCTCCTCGATAAGGTCTGTCAATC
GCATGCATAAAATTTAGCTTGATTTTCTCCCCTTCCTTGAGTCGCAGATC
CCCTAGCAATGGTGGTAGGGACTTTATCTCGCCCCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTTCTCCTCCTCCTGTCCCCTCCCCC
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Coding sequence (CDS) from alignment at scaffold_16:150713..152556-

>mRNA_7047 ID=mRNA_7047|Name=jgi.p|Nanoce1779_2|672067|organism=Nannochloropsis oceanica|type=CDS|length=714bp|location=Sequence derived from alignment at scaffold_16:150713..152556- (Nannochloropsis oceanica)
GCTGCGACCGTGGAAAAAGCTGCTCTGATAACAACCCTCTGTGAGCAAGC
AACGACGGTTGTGCAGGCCTTGGGAGAAGGCGGGAGGGAGGGCGGGAGCG
AAGGAGGCGGACTGACTTTTTTGCGGCTGTGCAGCAAAGGCTACGAAGTA
ATCATAACTCCTGACAAGGATTATTCGTTGGTGGTGGTCCGCACACGGAC
GGGTTGAATGGTTGCAACCGCGTCGACAAGCACCAGCATGCGCCAGGAGC
CGGCTCTCGTGAAAGACACTCTCAAACGCCTTCAAAGCCTTCCGAACGTC
CAACACGTCCTCATCCTCACCAAGAATGGCGTGGCCTTGCGGTCGACCCT
TAGTCCGGCTGCGACCGTGGAAAAAGCTGCTCTGATAACAACCCTCTGTG
AGCAAGCAACGACGGTTGTGCAGGCCTTGGGAGAAGGCGGGAGGGAGGGC
GGGAGCGAAGGAGGCGGACTGACTTTTTTGCGGCTGTGCAGCAAAGGCTA
CGAAGTAATCATAACTCCTGACAAGGATTATTCGTTGGTGGTGGTCCGCA
CACGGACGGGTTGAATGGTTGCAACCGCGTCGACAAGCACCAGCATGCGC
CAGGAGCCGGCTCTCGTGAAAGACACTCTCAAACGCCTTCAAAGCCTTCC
GAACGTCCAACACGTCCTCATCCTCACCAAGAATGGCGTGGCCTTGCGGT
CGACCCTTAGTCCG
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Synonyms
Publications