jgi.p|Nanoce1779_2|100958, mRNA_7046 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|100958
Unique Name	mRNA_7046
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1550
Alignment location	scaffold_16:149578..151253 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	101044
Track	FilteredModels2
ProteinId	100958

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_16	supercontig	scaffold_16:149578..151253 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|100958	gene_7046	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|100958	mRNA_7046-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7046	CDS_7046	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_16:149578..151253+
coding sequence from alignment at scaffold_16:149578..151253+

mRNA sequence

>mRNA_7046 ID=mRNA_7046|Name=jgi.p|Nanoce1779_2|100958|organism=Nannochloropsis oceanica|type=mRNA|length=1550bp
GGGGAGGGTGAGGAGGTCAGGAAAAAGCAATCATGATTATTTTTCGATGC
AGACGACCCACACAAACCACAGTATGTTACTAGTGCCAGAGCTCCTTCAA
ATACCTCTCACGATAATTATCGTCGCAACGTGGCTGGCTACACGTAGGAC
ACACAGGGCAGGCCACACAAAATCAATGCATCGATCGCCAGCACATCAGT
CCGACGATATAGTCTGCTTCTCCGCGCTTGCGATTCCGTCAAAAAATACA
TTTTCATTCCGCCCTAAGTGTGAATTCGAGAAGATCTCAAGGACAGCTAC
ATCTGCATCTTTCCCACCCGCCTTCTTCCTCGGGCCTGCATTCTGACCGA
GTGAAATCAAGTCCCCGCTCCATCAAGCCCCACCCTTCCCCAATCTCACC
CTCCCTCCCTCCTCTCCGAACCCCTCAGGGCCAAGCCATGGCAGACGGCG
TCAGCACCACCCCTTCTCCTCCGGCCCCTCCTCCTCCTCCTCGCCCTTCT
CCTCCTCGTCCTTCTTCTTCTTCTACTCCTTCTCTCCCTCTTCCTTCCTC
TTCACCTCCATCTACCATCTCCAGCACAACCATCATCGCCCCTTCCTCTT
CCCCCCCAAGCGACCCCGAACCACCCCTGCCCATCGTGGAACAACTACGC
CTGCATCTCCGCGAAGTCTTTGTCTATGCCGTTCCCCGCCTGGTCACCGC
CAAAGGCTATCGGGCCGAGGACCTGAACCTGCCCAACCCTCTCTTGACGG
GGTACCTAAAAGCATTTCAACGAGGAGACGCCGAGCTATTTCTCCGTATC
TATCAACCGGATCACGTCCTGTTTGCAGAATGCCCCATTACACTCCTCAC
CAATAAAAAAATAAAGAATCCGCTGGACAGTTTCTTCATTCCCGTCGTGG
ACTCCTCCAGGTATTTCGTCATCAAAGTTGTGGATAAAAACAGGCACGTT
TTTATCGCGATTGGCTTTAGGGAAAGGAGTGATGCCTTTGACCTCAAGGC
ATTGTTGGAGGACATGGTCTCGTATAATGCGCGAATGGAACTCGCGAACT
GTCGGACAAGGGAGATGGACGAGAGAATAAAGTCCCTACCACCATTGCTA
GGGGATCTGCGACTCAAGGAAGGGGAGAAAATCAAGCTAAATTTTATGCA
TGCGATTGACAGACCTTATCGAGGAGAGGGCAGCGGCAGCGGCAGGGGGA
GCACAGAGGAGAGAAAGCGGGAGCGGACGACCTCAAAGGTCGGTGAACAA
GGCTCGATCGTAGCCCCCTTATTGCCTCCTCCGCCGGCAGATCCCCACAT
AATCGCTGTGCCTGGCTCTCCCCCGACAGACTCCAACACGGCCTCCGCTC
CTACCTTTCTTGCGTCGAGGTTCGAAAAGCAACCGTCCGTCGACGAATGG
AGCGATTTTGTAGGGTAGATAAGGCAGCGGAGCGTGGGTTTTCAGGGGAG
GGGGGAAAGGAAAAAACAAGAAAGTAGAATAAAAATTGTAAAACAAATAA
ATAAATCAAGATAGAGTGATATATTGGCTGTTATGGGGTCTGGTTATGTC

protein sequence of jgi.p|Nanoce1779_2|100958

>mRNA_7046-protein ID=mRNA_7046-protein|Name=jgi.p|Nanoce1779_2|100958|organism=Nannochloropsis oceanica|type=polypeptide|length=327bp
MADGVSTTPSPPAPPPPPRPSPPRPSSSSTPSLPLPSSSPPSTISSTTII
APSSSPPSDPEPPLPIVEQLRLHLREVFVYAVPRLVTAKGYRAEDLNLPN
PLLTGYLKAFQRGDAELFLRIYQPDHVLFAECPITLLTNKKIKNPLDSFF
IPVVDSSRYFVIKVVDKNRHVFIAIGFRERSDAFDLKALLEDMVSYNARM
ELANCRTREMDERIKSLPPLLGDLRLKEGEKIKLNFMHAIDRPYRGEGSG
SGRGSTEERKRERTTSKVGEQGSIVAPLLPPPPADPHIIAVPGSPPTDSN
TASAPTFLASRFEKQPSVDEWSDFVG*

mRNA from alignment at scaffold_16:149578..151253+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7046 ID=mRNA_7046|Name=jgi.p|Nanoce1779_2|100958|organism=Nannochloropsis oceanica|type=mRNA|length=1676bp|location=Sequence derived from alignment at scaffold_16:149578..151253+ (Nannochloropsis oceanica)
GGGGAGGGTGAGGAGGTCAGGAAAAAGCAATCATGATTATTTTTCGATGC
AGACGACCCACACAAACCACAGTATGTTACTAGTGCCAGAGCTCCTTCAA
ATACCTCTCACGATAATTATCGTCGCAACGTGGCTGGCTACACGTAGGAC
ACACAGGGCAGGCCACACAAAATCAATGCATCGATCGCCAGCACATCAGT
CCGACGATATAGTCTGCTTCTCCGCGCTTGCGATTCCGTCAAAAAATACA
TTTTCATTCCGCCCTAAGTGTGAATTCGAGAAGATCTCAAGGACAGCTAC
ATCTGCATCTTTCCCACCCGCCTTCTTCCTCGGGCCTGCATTCTGACCGA
GTGAAATCAAGTCCCCGCTCCATCAAGCCCCACCCTTCCCCAATCTCACC
CTCCCTCCCTCCTCTCCGAACCCCTCAGGGCCAAGCCATGGCAGACGGCG
TCAGCACCACCCCTTCTCCTCCGGCCCCTCCTCCTCCTCCTCGCCCTTCT
CCTCCTCGTCCTTCTTCTTCTTCTACTCCTTCTCTCCCTCTTCCTTCCTC
TTCACCTCCATCTACCATCTCCAGCACAACCATCATCGCCCCTTCCTCTT
CCCCCCCAAGCGACCCCGAACCACCCCTGCCCATCGTGGAACAACTACGC
CTGCATCTCCGCGAAGTCTTTGTCTATGCCGTTCCCCGCCTGGTCACCGC
CAAAGGCTATCGGGCCGAGGACCTGAACCTGCCCAACCCTCTCTTGACGG
GGTACCTAAAAGCATTTCAACGAGGAGACGCCGAGCTATTTCTCCGTATC
TATCAACCGGATCACGTCCTGTTTGCAGAATGCCCCATTACACTCCTCAC
CAATAAAAAAATAAAGAATCCGCTGGACAGTTTCTTCATTCCCGTCGTGG
ACTCCTCCAGGTATTTCGTCATCAAAGTTGTGGATAAAAACAGGCACGTT
TTTATCGCGATTGGCTTTAGGGAAAGGAGTGATGCCTTTGACCTCAAGGC
ATTGTTGGAGGACATGGTCTCGTATAATGCGCGAATGGAACTCGCGAACT
GTCGGACAAGGGAGATGGACGAGAGAGTGAGGAAGGGGCGGGTGAGGGAG
GATAAGGGAGAAGGGGGGGGAGAGGGCGGGGGAGGGGGGGAGGGGACAGG
AGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGCG
AGATAAAGTCCCTACCACCATTGCTAGGGGATCTGCGACTCAAGGAAGGG
GAGAAAATCAAGCTAAATTTTATGCATGCGATTGACAGACCTTATCGAGG
AGAGGGCAGCGGCAGCGGCAGGGGGAGCACAGAGGAGAGAAAGCGGGAGC
GGACGACCTCAAAGGTCGGTGAACAAGGCTCGATCGTAGCCCCCTTATTG
CCTCCTCCGCCGGCAGATCCCCACATAATCGCTGTGCCTGGCTCTCCCCC
GACAGACTCCAACACGGCCTCCGCTCCTACCTTTCTTGCGTCGAGGTTCG
AAAAGCAACCGTCCGTCGACGAATGGAGCGATTTTGTAGGGTAGATAAGG
CAGCGGAGCGTGGGTTTTCAGGGGAGGGGGGAAAGGAAAAAACAAGAAAG
TAGAATAAAAATTGTAAAACAAATAAATAAATCAAGATAGAGTGATATAT
TGGCTGTTATGGGGTCTGGTTATGTC

Coding sequence (CDS) from alignment at scaffold_16:149578..151253+

>mRNA_7046 ID=mRNA_7046|Name=jgi.p|Nanoce1779_2|100958|organism=Nannochloropsis oceanica|type=CDS|length=1962bp|location=Sequence derived from alignment at scaffold_16:149578..151253+ (Nannochloropsis oceanica)
ATGGCAGACGGCGTCAGCACCACCCCTTCTCCTCCGGCCCCTCCTCCTCC
TCCTCGCCCTTCTCCTCCTCGTCCTTCTTCTTCTTCTACTCCTTCTCTCC
CTCTTCCTTCCTCTTCACCTCCATCTACCATCTCCAGCACAACCATCATC
GCCCCTTCCTCTTCCCCCCCAAGCGACCCCGAACCACCCCTGCCCATCGT
GGAACAACTACGCCTGCATCTCCGCGAAGTCTTTGTCTATGCCGTTCCCC
GCCTGGTCACCGCCAAAGGCTATCGGGCCGAGGACCTGAACCTGCCCAAC
CCTCTCTTGACGGGGTACCTAAAAGCATTTCAACGAGGAGACGCCGAGCT
ATTTCTCCGTATCTATCAACCGGATCACGTCCTGTTTGCAGAATGCCCCA
TTACACTCCTCACCAATAAAAAAATAAAGAATCCGCTGGACAGTTTCTTC
ATTCCCGTCGTGGACTCCTCCAGGTATTTCGTCATCAAAGTTGTGGATAA
AAACAGGCACGTTTTTATCGCGATTGGCTTTAGGGAAAGGAGTGATGCCT
TTGACCTCAAGGCATTGTTGGAGGACATGGTCTCGTATAATGCGCGAATG
GAACTCGCGAACTGTCGGACAAGGGAGATGGACGAGAGAATAAAGTCCCT
ACCACCATTGCTAGGGGATCTGCGACTCAAGGAAGGGGAGAAAATCAAGC
TAAATTTTATGCATGCGATTGACAGACCTTATCGAGGAGAGGGCAGCGGC
AGCGGCAGGGGGAGCACAGAGGAGAGAAAGCGGGAGCGGACGACCTCAAA
GGTCGGTGAACAAGGCTCGATCGTAGCCCCCTTATTGCCTCCTCCGCCGG
CAGATCCCCACATAATCGCTGTGCCTGGCTCTCCCCCGACAGACTCCAAC
ACGGCCTCCGCTCCTACCTTTCTTGCGTCGAGGTTCGAAAAGCAACCGTC
CGTCGACGAATGGAGCGATTTTGTAGGGTAGATGGCAGACGGCGTCAGCA
CCACCCCTTCTCCTCCGGCCCCTCCTCCTCCTCCTCGCCCTTCTCCTCCT
CGTCCTTCTTCTTCTTCTACTCCTTCTCTCCCTCTTCCTTCCTCTTCACC
TCCATCTACCATCTCCAGCACAACCATCATCGCCCCTTCCTCTTCCCCCC
CAAGCGACCCCGAACCACCCCTGCCCATCGTGGAACAACTACGCCTGCAT
CTCCGCGAAGTCTTTGTCTATGCCGTTCCCCGCCTGGTCACCGCCAAAGG
CTATCGGGCCGAGGACCTGAACCTGCCCAACCCTCTCTTGACGGGGTACC
TAAAAGCATTTCAACGAGGAGACGCCGAGCTATTTCTCCGTATCTATCAA
CCGGATCACGTCCTGTTTGCAGAATGCCCCATTACACTCCTCACCAATAA
AAAAATAAAGAATCCGCTGGACAGTTTCTTCATTCCCGTCGTGGACTCCT
CCAGGTATTTCGTCATCAAAGTTGTGGATAAAAACAGGCACGTTTTTATC
GCGATTGGCTTTAGGGAAAGGAGTGATGCCTTTGACCTCAAGGCATTGTT
GGAGGACATGGTCTCGTATAATGCGCGAATGGAACTCGCGAACTGTCGGA
CAAGGGAGATGGACGAGAGAATAAAGTCCCTACCACCATTGCTAGGGGAT
CTGCGACTCAAGGAAGGGGAGAAAATCAAGCTAAATTTTATGCATGCGAT
TGACAGACCTTATCGAGGAGAGGGCAGCGGCAGCGGCAGGGGGAGCACAG
AGGAGAGAAAGCGGGAGCGGACGACCTCAAAGGTCGGTGAACAAGGCTCG
ATCGTAGCCCCCTTATTGCCTCCTCCGCCGGCAGATCCCCACATAATCGC
TGTGCCTGGCTCTCCCCCGACAGACTCCAACACGGCCTCCGCTCCTACCT
TTCTTGCGTCGAGGTTCGAAAAGCAACCGTCCGTCGACGAATGGAGCGAT
TTTGTAGGGTAG

Synonyms

Publications