jgi.p|Nanoce1779_2|595399, mRNA_7043 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595399
Unique NamemRNA_7043
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length834
Alignment locationscaffold_16:141631..142464 +

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Properties
Property NameValue
TranscriptId595485
TrackFilteredModels2
ProteinId595399
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:141631..142464 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595399gene_7043Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595399mRNA_7043-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7043CDS_7043Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7043 ID=mRNA_7043|Name=jgi.p|Nanoce1779_2|595399|organism=Nannochloropsis oceanica|type=mRNA|length=834bp
CCCCCATACCCACTACCATAGAGACTCCTCCCATAGCCCATTCCCCCCAT
CCCTCCTCCATACATTGATGACCCGTACATCGACCCTCCTCCTCCATACC
CTGCTGCCCCGCCGTACAATGAAGAGGACGCACCGTACCGACCGTAGCCT
TGTGAAGAGGAGGGATAGCCATAGCTGCCGCTTGTCAGACCGGTGCTGCC
TTCCATGGCGTAGCGGGAGGAAGGGGAGGAAAGGGAGGAACTACCGTATC
CCCCTCCTCCATTGGTAGTGGTCGAGTAATCTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTTGTCGTTGTGAGGAGGAGGAGGAGGAGGAGGAGTG
AAGGTCATGTCCACCCTCGTGTCGTCCGTTTTCTTGCTGCTGCTGCTGCT
GCAGCATGCCTCCACCCCCTACACCAGGTCCAGCACCAGAACTAACGCCA
CTCCGCATGGATGGTCTTTGCTGCATTCCAGTGCCACTGCTACTACTTGT
CATTGCCCTCATCCCTCCGCCCGCACTACCAGCAGCACTAACACCGACAG
GAATCGAGTCAGTCGTCGATGCACTCATGACCCGCCTTGCCGATTGCTCC
CAGGGCTTGAGCGGTGATGCACGTGTGTAAGGGTTCGGTGTGGTGGCACT
GCTGCCACTGGGACCGTGAGGAGCGTGAAGAGGTTGCCCTCCGCGGGGGC
TGTGGGTAGGCACAGCTACCGAGGCGGCGGAGGAGGAATGGGTGGGCTGG
TGGAGGGTGGAAGGAAGAGGGGCCATCTCCCTGGGTATCTGCTCGTCTTC
CCCTCTGGTCTTAGCACAGGGGGAATGTGTCTGT
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protein sequence of jgi.p|Nanoce1779_2|595399

>mRNA_7043-protein ID=mRNA_7043-protein|Name=jgi.p|Nanoce1779_2|595399|organism=Nannochloropsis oceanica|type=polypeptide|length=87bp
MSTLVSSVFLLLLLLQHASTPYTRSSTRTNATPHGWSLLHSSATATTCHC
PHPSARTTSSTNTDRNRVSRRCTHDPPCRLLPGLER*
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mRNA from alignment at scaffold_16:141631..142464+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7043 ID=mRNA_7043|Name=jgi.p|Nanoce1779_2|595399|organism=Nannochloropsis oceanica|type=mRNA|length=834bp|location=Sequence derived from alignment at scaffold_16:141631..142464+ (Nannochloropsis oceanica)
CCCCCATACCCACTACCATAGAGACTCCTCCCATAGCCCATTCCCCCCAT
CCCTCCTCCATACATTGATGACCCGTACATCGACCCTCCTCCTCCATACC
CTGCTGCCCCGCCGTACAATGAAGAGGACGCACCGTACCGACCGTAGCCT
TGTGAAGAGGAGGGATAGCCATAGCTGCCGCTTGTCAGACCGGTGCTGCC
TTCCATGGCGTAGCGGGAGGAAGGGGAGGAAAGGGAGGAACTACCGTATC
CCCCTCCTCCATTGGTAGTGGTCGAGTAATCTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTTGTCGTTGTGAGGAGGAGGAGGAGGAGGAGGAGTG
AAGGTCATGTCCACCCTCGTGTCGTCCGTTTTCTTGCTGCTGCTGCTGCT
GCAGCATGCCTCCACCCCCTACACCAGGTCCAGCACCAGAACTAACGCCA
CTCCGCATGGATGGTCTTTGCTGCATTCCAGTGCCACTGCTACTACTTGT
CATTGCCCTCATCCCTCCGCCCGCACTACCAGCAGCACTAACACCGACAG
GAATCGAGTCAGTCGTCGATGCACTCATGACCCGCCTTGCCGATTGCTCC
CAGGGCTTGAGCGGTGATGCACGTGTGTAAGGGTTCGGTGTGGTGGCACT
GCTGCCACTGGGACCGTGAGGAGCGTGAAGAGGTTGCCCTCCGCGGGGGC
TGTGGGTAGGCACAGCTACCGAGGCGGCGGAGGAGGAATGGGTGGGCTGG
TGGAGGGTGGAAGGAAGAGGGGCCATCTCCCTGGGTATCTGCTCGTCTTC
CCCTCTGGTCTTAGCACAGGGGGAATGTGTCTGT
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Coding sequence (CDS) from alignment at scaffold_16:141631..142464+

>mRNA_7043 ID=mRNA_7043|Name=jgi.p|Nanoce1779_2|595399|organism=Nannochloropsis oceanica|type=CDS|length=261bp|location=Sequence derived from alignment at scaffold_16:141631..142464+ (Nannochloropsis oceanica)
ATGTCCACCCTCGTGTCGTCCGTTTTCTTGCTGCTGCTGCTGCTGCAGCA
TGCCTCCACCCCCTACACCAGGTCCAGCACCAGAACTAACGCCACTCCGC
ATGGATGGTCTTTGCTGCATTCCAGTGCCACTGCTACTACTTGTCATTGC
CCTCATCCCTCCGCCCGCACTACCAGCAGCACTAACACCGACAGGAATCG
AGTCAGTCGTCGATGCACTCATGACCCGCCTTGCCGATTGCTCCCAGGGC
TTGAGCGGTGA
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Synonyms
Publications