jgi.p|Nanoce1779_2|631603, mRNA_7040 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|631603
Unique Name	mRNA_7040
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1162
Alignment location	scaffold_16:135428..137776 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	631689
Track	FilteredModels2
ProteinId	631603

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_16	supercontig	scaffold_16:135428..137776 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|631603	gene_7040	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|631603	mRNA_7040-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7040	CDS_7040	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_16:135428..137776+
coding sequence from alignment at scaffold_16:135428..137776+

mRNA sequence

>mRNA_7040 ID=mRNA_7040|Name=jgi.p|Nanoce1779_2|631603|organism=Nannochloropsis oceanica|type=mRNA|length=1162bp
ATGCCTTAATGTGCTCCATAAAGGTGTAGACAGGACGCTAGGGTGCGCGA
AGGCTCTGTGAGATGGACGGTGGGGACGACGACGAGAGATGATGCAAGCA
AGACACCAAAAAAAGGCTTCCTCCGCATCTCGTCCCCCTTCCAACCTCCT
AGCGCAAGTCCGTCGGCACTCCCTTGTCATCGCCGACACGGCCGATTATC
TGCAACTTGAATACCTGCCGGATGTATGGGAAGTGACGACGAACCCCTCC
ATTGTTTGGCAGGCGGCTCAGAAAGAGGAGTTCTTTCATCTGCTCGAAGA
AGCCTGTAATATGTACCTTCCCCTCCAGAAGGAAGGCATCCCTGACATGA
TCGAAGCTGTCCCCCCAAAGTTTGCCCGGGAGATCTTCAAACGCCTCCCC
CGGGCTCCCTCCTCTTCCTCCCCCTCCCGCTCTTCCTCCTCTCCTACCTC
CTTCATGCGTAAGGTCTACATTCAACTCGACCCCCGTTTTTCGTTCAACG
AAGATTTGGCAGTTAAAAAGGCTCTTCATTTAGTGTACTTGTGCGTGGAA
AAACATAATATTCCTCTTGAGAATGTAGTAATAAAAATACCCGGATCCTG
GGAAGGAATTCAGGCGGCCAGGAGGTTGGAGGAGGGAGGGGGGGAGGGAG
GGAGGGAGGGAGGGGTACGGTGTTTGGTGACGGCGGTGACGTCGATTGTC
CAGGCGAGGGCAGCGGCAGAGGCCGGGGTGAGCTACGTGGCTCCGTACGT
GGGAAGGGTGAGTGATTGGGAAGGGGAGGAGGCAGGAAGGGAGGTAGGGG
AGGAGGGAGGGATGGAGCGAGGGGTGGGTTTGGCCAGGGACATGCAGATG
TTGTTTCAGATGAGGGGGTGGGGGAAGACCAAAGTGATGGCAGCAAGTCT
GAGGGGACCCGAGCAGATCAAGGCCCTGATAGGGTGTGATATCCTGACCG
TGAGTCCCAAGGATCTACGTGCCTTAGAAAAAGTGTTTTTTGACTATTTG
GACGACCAGCATAGGCGGAGATAAAGCAAGGAGGAGAACACCGCTGTGCG
AGAGCACCACGAGGTGCATTAAACGTGCATGTTGTTTGTCGTGCGACAAG
AGGTGAGTTTGAGTAGGATGCATTCAAATTAACTACAAAATAAAAGTCAT
GACCGTCAAGAT

protein sequence of jgi.p|Nanoce1779_2|631603

>mRNA_7040-protein ID=mRNA_7040-protein|Name=jgi.p|Nanoce1779_2|631603|organism=Nannochloropsis oceanica|type=polypeptide|length=312bp
MMQARHQKKASSASRPPSNLLAQVRRHSLVIADTADYLQLEYLPDVWEVT
TNPSIVWQAAQKEEFFHLLEEACNMYLPLQKEGIPDMIEAVPPKFAREIF
KRLPRAPSSSSPSRSSSSPTSFMRKVYIQLDPRFSFNEDLAVKKALHLVY
LCVEKHNIPLENVVIKIPGSWEGIQAARRLEEGGGEGGREGGVRCLVTAV
TSIVQARAAAEAGVSYVAPYVGRVSDWEGEEAGREVGEEGGMERGVGLAR
DMQMLFQMRGWGKTKVMAASLRGPEQIKALIGCDILTVSPKDLRALEKVF
FDYLDDQHRRR*

mRNA from alignment at scaffold_16:135428..137776+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7040 ID=mRNA_7040|Name=jgi.p|Nanoce1779_2|631603|organism=Nannochloropsis oceanica|type=mRNA|length=2349bp|location=Sequence derived from alignment at scaffold_16:135428..137776+ (Nannochloropsis oceanica)
ATGCCTTAATGTGCTCCATAAAGGTGTAGACAGGACGCTAGGGTGCGCGA
AGGCTCTGTGAGATGGACGGTGGGGACGACGACGAGAGATGATGCAAGCA
AGACACCAAAAAAAGGTAGAACCTTCGTGCCGCAGACTTCGAGAATACCC
AGATCAGACAATACAATAACTAGGGATTGTTTGGAGAAGATCGGAGTGTT
TTACGTCTATTGGTGGCATGAATAACGTCCCACCAACGCAGAGGCTTGCG
CCGTGTCCGTTCAGCCCCTCGCTCGCCGTTATGGATTTCGTCAGCGAGCA
TCTCAAAGTGTGATGGCCGTTTTGACGGATCTGCTCTAGGGGCTTTGTGT
GACCCTAACAGAGGAGGCAGCAATCAGCAAAGATATCTCATTCCCTTTCC
ATGTTCCAACCTCCCCACCGGTCACTCTCAAAACACACGCACAGCCACCT
CGCCATCAGTACCCAGCAGCGGTAACAGCAGCAGCGGCAGCAACAGCCGC
ATGGCAACAAGTCCACGCCTCAAATCTTGGTTTTCCCTCCTTCTTCTCTT
CTCCACTCTCCACTCTTCCTGCTCTTGGCACCCTGCTGCTTCCCTCCCTA
GCTATGCCTACCACTTCTCTCGCCCCTCATCCCTGTGCATGCAGGCTTCC
TCCGCATCTCGTCCCCCTTCCAACCTCCTAGCGCAAGTCCGTCGGCACTC
CCTTGTCATCGCCGACACGGCCGATTATCTGCAACTTGAATACCTGCCGG
ATGTATGGGAAGTGACGACGAACCCCTCCATTGTTTGGCAGGCGGCTCAG
AAAGAGGAGTTCTTTCATCTGCTCGAAGAAGCCTGTAATGTACGTGCGCG
ACGCGTTCATCTGGATTATTCTATCCTGCAGTTTGTGTGTGCGTATCTGC
GCTTGCATGCTACTAGGCAAGAGAGGGATGAAGGTGAAAGCCACAATCCG
AACGATTCCATTCCCTTCCTTCCTCCCTTCCTCCCTTCCTCCCTTCCTCC
CTCCTCTCCCACAGATGTACCTTCCCCTCCAGAAGGAAGGCATCCCTGAC
ATGATCGAAGCTGTCCCCCCAAAGTTTGCCCGGGAGATCTTCAAACGCCT
CCCCCGGGCTCCCTCCTCTTCCTCCCCCTCCCGCTCTTCCTCCTCTCCTA
CCTCCTTCATGCGTAAGGTCTACATTCAACTCGACCCCCGTTTTTCGTTC
AACGAAGATTTGGCAGTTAAAAAGGCTCTTCATTTAGTGTACTTGTGCGT
GGAAAAACATAATATTCCTCTTGAGAATGTAGTAATAAAAATACCCGGAT
CCTGGGAAGGAATTCAGGCGGCCAGGAGGTTGGAGGAGGGAGGGGGGGAG
GGAGGGAGGGAGGGAGGGGTACGGTGTTTGGTGACGGCGGTGACGTCGAT
TGTCCAGGCGAGGGCAGCGGCAGAGGCCGGGGTGAGCTACGTGGCTCCGT
ACGTGGGAAGGGTGAGTGATTGGGAAGGGGAGGAGGCAGGAAGGGAGGTA
GGGGAGGAGGGAGGGATGGAGCGAGGGGTGGGTTTGGCCAGGGACATGCA
GATGTTGTTTCAGATGAGGGGGTGGGGGAAGACCAAAGTGATGGCAGCAA
GTCTGAGGGGACCCGAGCAGATCAAGGCCCTGATAGGGTGTGATATCCTG
ACCGTGAGTCCCAAGGTAATGATCGCGCTGGAATGCTTAGAGCCTGTGGA
GGAGGAGATAGGGAAGGAGGGAGGGAAGGAGGTATCTTCTTCCTTTCTCC
CCGAGGTACCGACGTGGGAAGATCTAACGCCTCGATCACGACGTCTATTG
GGAGGGAAGGAAGGGAAGGAAGGATGGGCGAAATGGACGGAGGAGGAGTT
CCGGGTAGCGTTGCAGAGGGATGCATGTGGGACCGCAGTGTTCGCGAAGA
GCATGAAGCTTTTTGTGGAGGTGCGTTGTACGTTGCTTGCTTTCCTTACA
TGCAGGGAGCGGAGGAATAGAAGGGAGGGGAGAAAACAAAAAAGCGGGGG
AGGATGGCAGGGGGGTTTCGTGTGAGTTTTTTGCATTCTCCCCATTGGCC
GACTCGCACACCGGGGCTGCAGAGGGAGAGAGGAAGGGTGTATGCATATG
CTGACTGCTCTTCTTCTCCCTTCTCCTCCTCCAATCTACCCACCACAGGA
TCTACGTGCCTTAGAAAAAGTGTTTTTTGACTATTTGGACGACCAGCATA
GGCGGAGATAAAGCAAGGAGGAGAACACCGCTGTGCGAGAGCACCACGAG
GTGCATTAAACGTGCATGTTGTTTGTCGTGCGACAAGAGGTGAGTTTGAG
TAGGATGCATTCAAATTAACTACAAAATAAAAGTCATGACCGTCAAGAT

Coding sequence (CDS) from alignment at scaffold_16:135428..137776+

>mRNA_7040 ID=mRNA_7040|Name=jgi.p|Nanoce1779_2|631603|organism=Nannochloropsis oceanica|type=CDS|length=3744bp|location=Sequence derived from alignment at scaffold_16:135428..137776+ (Nannochloropsis oceanica)
ATGATGCAAGCAAGACACCAAAAAAAGGCTTCCTCCGCATCTCGTCCCCC
TTCCAACCTCCTAGCGCAAGTCCGTCGGCACTCCCTTGTCATCGCCGACA
CGGCCGATTATCTGCAACTTGAATACCTGCCGGATGTATGGGAAGTGACG
ACGAACCCCTCCATTGTTTGGCAGGCGGCTCAGAAAGAGGAGTTCTTTCA
TCTGCTCGAAGAAGCCTGTAATATGTACCTTCCCCTCCAGAAGGAAGGCA
TCCCTGACATGATCGAAGCTGTCCCCCCAAAGTTTGCCCGGGAGATCTTC
AAACGCCTCCCCCGGGCTCCCTCCTCTTCCTCCCCCTCCCGCTCTTCCTC
CTCTCCTACCTCCTTCATGCGTAAGGTCTACATTCAACTCGACCCCCGTT
TTTCGTTCAACGAAGATTTGGCAGTTAAAAAGGCTCTTCATTTAGTGTAC
TTGTGCGTGGAAAAACATAATATTCCTCTTGAGAATGTAGTAATAAAAAT
ACCCGGATCCTGGGAAGGAATTCAGGCGGCCAGGAGGTTGGAGGAGGGAG
GGGGGGAGGGAGGGAGGGAGGGAGGGGTACGGTGTTTGGTGACGGCGGTG
ACGTCGATTGTCCAGGCGAGGGCAGCGGCAGAGGCCGGGGTGAGCTACGT
GGCTCCGTACGTGGGAAGGGTGAGTGATTGGGAAGGGGAGGAGGCAGGAA
GGGAGGTAGGGGAGGAGGGAGGGATGGAGCGAGGGGTGGGTTTGGCCAGG
GACATGCAGATGTTGTTTCAGATGAGGGGGTGGGGGAAGACCAAAGTGAT
GGCAGCAAGTCTGAGGGGACCCGAGCAGATCAAGGCCCTGATAGGGTGTG
ATATCCTGACCGTGAGTCCCAAGGATCTACGTGCCTTAGAAAAAGTGTTT
TTTGACTATTTGGACGACCAGCATAGGCGGAGATAAATGATGCAAGCAAG
ACACCAAAAAAAGGCTTCCTCCGCATCTCGTCCCCCTTCCAACCTCCTAG
CGCAAGTCCGTCGGCACTCCCTTGTCATCGCCGACACGGCCGATTATCTG
CAACTTGAATACCTGCCGGATGTATGGGAAGTGACGACGAACCCCTCCAT
TGTTTGGCAGGCGGCTCAGAAAGAGGAGTTCTTTCATCTGCTCGAAGAAG
CCTGTAATATGTACCTTCCCCTCCAGAAGGAAGGCATCCCTGACATGATC
GAAGCTGTCCCCCCAAAGTTTGCCCGGGAGATCTTCAAACGCCTCCCCCG
GGCTCCCTCCTCTTCCTCCCCCTCCCGCTCTTCCTCCTCTCCTACCTCCT
TCATGCGTAAGGTCTACATTCAACTCGACCCCCGTTTTTCGTTCAACGAA
GATTTGGCAGTTAAAAAGGCTCTTCATTTAGTGTACTTGTGCGTGGAAAA
ACATAATATTCCTCTTGAGAATGTAGTAATAAAAATACCCGGATCCTGGG
AAGGAATTCAGGCGGCCAGGAGGTTGGAGGAGGGAGGGGGGGAGGGAGGG
AGGGAGGGAGGGGTACGGTGTTTGGTGACGGCGGTGACGTCGATTGTCCA
GGCGAGGGCAGCGGCAGAGGCCGGGGTGAGCTACGTGGCTCCGTACGTGG
GAAGGGTGAGTGATTGGGAAGGGGAGGAGGCAGGAAGGGAGGTAGGGGAG
GAGGGAGGGATGGAGCGAGGGGTGGGTTTGGCCAGGGACATGCAGATGTT
GTTTCAGATGAGGGGGTGGGGGAAGACCAAAGTGATGGCAGCAAGTCTGA
GGGGACCCGAGCAGATCAAGGCCCTGATAGGGTGTGATATCCTGACCGTG
AGTCCCAAGGATCTACGTGCCTTAGAAAAAGTGTTTTTTGACTATTTGGA
CGACCAGCATAGGCGGAGATAAATGATGCAAGCAAGACACCAAAAAAAGG
CTTCCTCCGCATCTCGTCCCCCTTCCAACCTCCTAGCGCAAGTCCGTCGG
CACTCCCTTGTCATCGCCGACACGGCCGATTATCTGCAACTTGAATACCT
GCCGGATGTATGGGAAGTGACGACGAACCCCTCCATTGTTTGGCAGGCGG
CTCAGAAAGAGGAGTTCTTTCATCTGCTCGAAGAAGCCTGTAATATGTAC
CTTCCCCTCCAGAAGGAAGGCATCCCTGACATGATCGAAGCTGTCCCCCC
AAAGTTTGCCCGGGAGATCTTCAAACGCCTCCCCCGGGCTCCCTCCTCTT
CCTCCCCCTCCCGCTCTTCCTCCTCTCCTACCTCCTTCATGCGTAAGGTC
TACATTCAACTCGACCCCCGTTTTTCGTTCAACGAAGATTTGGCAGTTAA
AAAGGCTCTTCATTTAGTGTACTTGTGCGTGGAAAAACATAATATTCCTC
TTGAGAATGTAGTAATAAAAATACCCGGATCCTGGGAAGGAATTCAGGCG
GCCAGGAGGTTGGAGGAGGGAGGGGGGGAGGGAGGGAGGGAGGGAGGGGT
ACGGTGTTTGGTGACGGCGGTGACGTCGATTGTCCAGGCGAGGGCAGCGG
CAGAGGCCGGGGTGAGCTACGTGGCTCCGTACGTGGGAAGGGTGAGTGAT
TGGGAAGGGGAGGAGGCAGGAAGGGAGGTAGGGGAGGAGGGAGGGATGGA
GCGAGGGGTGGGTTTGGCCAGGGACATGCAGATGTTGTTTCAGATGAGGG
GGTGGGGGAAGACCAAAGTGATGGCAGCAAGTCTGAGGGGACCCGAGCAG
ATCAAGGCCCTGATAGGGTGTGATATCCTGACCGTGAGTCCCAAGGATCT
ACGTGCCTTAGAAAAAGTGTTTTTTGACTATTTGGACGACCAGCATAGGC
GGAGATAAATGATGCAAGCAAGACACCAAAAAAAGGCTTCCTCCGCATCT
CGTCCCCCTTCCAACCTCCTAGCGCAAGTCCGTCGGCACTCCCTTGTCAT
CGCCGACACGGCCGATTATCTGCAACTTGAATACCTGCCGGATGTATGGG
AAGTGACGACGAACCCCTCCATTGTTTGGCAGGCGGCTCAGAAAGAGGAG
TTCTTTCATCTGCTCGAAGAAGCCTGTAATATGTACCTTCCCCTCCAGAA
GGAAGGCATCCCTGACATGATCGAAGCTGTCCCCCCAAAGTTTGCCCGGG
AGATCTTCAAACGCCTCCCCCGGGCTCCCTCCTCTTCCTCCCCCTCCCGC
TCTTCCTCCTCTCCTACCTCCTTCATGCGTAAGGTCTACATTCAACTCGA
CCCCCGTTTTTCGTTCAACGAAGATTTGGCAGTTAAAAAGGCTCTTCATT
TAGTGTACTTGTGCGTGGAAAAACATAATATTCCTCTTGAGAATGTAGTA
ATAAAAATACCCGGATCCTGGGAAGGAATTCAGGCGGCCAGGAGGTTGGA
GGAGGGAGGGGGGGAGGGAGGGAGGGAGGGAGGGGTACGGTGTTTGGTGA
CGGCGGTGACGTCGATTGTCCAGGCGAGGGCAGCGGCAGAGGCCGGGGTG
AGCTACGTGGCTCCGTACGTGGGAAGGGTGAGTGATTGGGAAGGGGAGGA
GGCAGGAAGGGAGGTAGGGGAGGAGGGAGGGATGGAGCGAGGGGTGGGTT
TGGCCAGGGACATGCAGATGTTGTTTCAGATGAGGGGGTGGGGGAAGACC
AAAGTGATGGCAGCAAGTCTGAGGGGACCCGAGCAGATCAAGGCCCTGAT
AGGGTGTGATATCCTGACCGTGAGTCCCAAGGATCTACGTGCCTTAGAAA
AAGTGTTTTTTGACTATTTGGACGACCAGCATAGGCGGAGATAA

Synonyms

Publications