jgi.p|Nanoce1779_2|573850, mRNA_704 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573850
Unique NamemRNA_704
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1550
Alignment locationscaffold_2:231828..233377 -

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Properties
Property NameValue
TranscriptId573936
TrackFilteredModels2
ProteinId573850
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:231828..233377 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573850gene_704Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573850mRNA_704-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_704CDS_704Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_704 ID=mRNA_704|Name=jgi.p|Nanoce1779_2|573850|organism=Nannochloropsis oceanica|type=mRNA|length=1550bp
ACAGGAAGGACGATTTCCACAACGGTGAGCCCTCGCCGCACTGTGCGTGG
CCAAGGTGGTGGCTCGCGCGGTGACTGGTTCTCTTCCTTTAGTTTCGTTT
CCTCTCCCTCGACGACTTCAAGGGGTGACATGTCGTCCAACGTGGAAATG
ACCCATGGGGACATGGAGACGGGCAGCGCGGGTGGCTTGGAACGGGATTT
TGAGAAAGAAAGGCTTCTAGCTTCTTTGACACCGCCCCCAGCGACGGGAA
GTGGCGCACATAGCGGAGACACATCCAAGAGTCATGGCAAGGCAGGGATG
GTGTTGGGGGGGAGCAGCAGTAGCACCGGCACGGAGGACAGCATGAGGGG
CAAGGCCATCCGTATGGTTGCCTGTTTTGTGGGGCTCCAAGCCTCGTACA
TAACTTGGGGACTGGTGCAAGAACGAATCGTCACTAAGGCATATGGCGAG
GGGGACGACGCGGAATTCTTCCCTTCGTCCGCCTTTTTGGTGTTCGGCAA
CAGGTTCCTCGCCCTATTCCTGGCCGCCGCCATTGTCTACTGGCCCTGGT
TCGGTCAAGAGGAAGGGACAGGGGCATCATCCGCGTCGGTGAGTGGATCG
TGCGCCTCACGGGGGTTGAAGGCGCCGTTGTTACAGTATGCCCCCGCGTC
GCTGAGTAACATTTTGAGCAGTTGGGCTCAGTATGAAGCGTTGAAGTACA
TATCCTTTCCCACGCAAGTGCTGTCCAAATCGAGTAAGATTATTCCGGTC
ATGCTGGTGGGGAGGCTATTGCACCGGAAGTCGTACCCGTGGAGGGAGTA
CGCGGAGGCGGCGTTTATCACGTTGGGAGTGACAATTTTTTCTCTGAATG
AGAAAGCTCCGAAGGCAGGGCACGAGGGAGGATCCGATTCAATCCTAGGG
TACTTCCTTTTGGCCCTATACTTGACATGTGACTCCTTCACGAGTCAATG
GCAGGATAAGGTGTTCAAGAAGTTCCATGTCTCGCAGTTCCAGATGATGC
TGGGTATCAATTTGTGCTCAATTGTTTTTACTGGTGCCTCTTTGCTGCAG
ACCGGCCAGGGGGGGACGTCGTGGGCCTTCATTCTTCGACATCCCGACGC
GGCGCAACATGTTTTCCTCCTCTCCCTTTCATCGGCCACGGGTCAATTGT
TTATTTTCTACACGATCAAACAGTTTGGGGCGATTATATTCACCATCATG
ATGACGATTCGGCAGATGCTGAGTATGATCTTGTCCTGCCTCATTTTTGC
GCACCCCATGGCCTGGCCGAGTTTTGTGGGGGCGATGATTTGCTTCACCA
CCATCGGTGTACGTATTCATCGAAACATTCAGCGGGGGAAGCCGCGGAAA
GGTAGTGCAGCGGGAAGTGGGGGGTCGTGAAGTGGAGGAACATGTAGGCA
GTAGAGGACAGGAAAAGTCTTTGTGATTTTAATACGCGAGATACTGTGAT
CAATGGACAACGGGATGTCGGAAAAGTACAGGGAATAGATGGTTCGAATA
TGAAAATAAAATGGGAAAGGAACAACAAAGAATATGTATCCGTAGCTAAC
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protein sequence of jgi.p|Nanoce1779_2|573850

>mRNA_704-protein ID=mRNA_704-protein|Name=jgi.p|Nanoce1779_2|573850|organism=Nannochloropsis oceanica|type=polypeptide|length=417bp
MSSNVEMTHGDMETGSAGGLERDFEKERLLASLTPPPATGSGAHSGDTSK
SHGKAGMVLGGSSSSTGTEDSMRGKAIRMVACFVGLQASYITWGLVQERI
VTKAYGEGDDAEFFPSSAFLVFGNRFLALFLAAAIVYWPWFGQEEGTGAS
SASVSGSCASRGLKAPLLQYAPASLSNILSSWAQYEALKYISFPTQVLSK
SSKIIPVMLVGRLLHRKSYPWREYAEAAFITLGVTIFSLNEKAPKAGHEG
GSDSILGYFLLALYLTCDSFTSQWQDKVFKKFHVSQFQMMLGINLCSIVF
TGASLLQTGQGGTSWAFILRHPDAAQHVFLLSLSSATGQLFIFYTIKQFG
AIIFTIMMTIRQMLSMILSCLIFAHPMAWPSFVGAMICFTTIGVRIHRNI
QRGKPRKGSAAGSGGS*
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mRNA from alignment at scaffold_2:231828..233377-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_704 ID=mRNA_704|Name=jgi.p|Nanoce1779_2|573850|organism=Nannochloropsis oceanica|type=mRNA|length=1550bp|location=Sequence derived from alignment at scaffold_2:231828..233377- (Nannochloropsis oceanica)
ACAGGAAGGACGATTTCCACAACGGTGAGCCCTCGCCGCACTGTGCGTGG
CCAAGGTGGTGGCTCGCGCGGTGACTGGTTCTCTTCCTTTAGTTTCGTTT
CCTCTCCCTCGACGACTTCAAGGGGTGACATGTCGTCCAACGTGGAAATG
ACCCATGGGGACATGGAGACGGGCAGCGCGGGTGGCTTGGAACGGGATTT
TGAGAAAGAAAGGCTTCTAGCTTCTTTGACACCGCCCCCAGCGACGGGAA
GTGGCGCACATAGCGGAGACACATCCAAGAGTCATGGCAAGGCAGGGATG
GTGTTGGGGGGGAGCAGCAGTAGCACCGGCACGGAGGACAGCATGAGGGG
CAAGGCCATCCGTATGGTTGCCTGTTTTGTGGGGCTCCAAGCCTCGTACA
TAACTTGGGGACTGGTGCAAGAACGAATCGTCACTAAGGCATATGGCGAG
GGGGACGACGCGGAATTCTTCCCTTCGTCCGCCTTTTTGGTGTTCGGCAA
CAGGTTCCTCGCCCTATTCCTGGCCGCCGCCATTGTCTACTGGCCCTGGT
TCGGTCAAGAGGAAGGGACAGGGGCATCATCCGCGTCGGTGAGTGGATCG
TGCGCCTCACGGGGGTTGAAGGCGCCGTTGTTACAGTATGCCCCCGCGTC
GCTGAGTAACATTTTGAGCAGTTGGGCTCAGTATGAAGCGTTGAAGTACA
TATCCTTTCCCACGCAAGTGCTGTCCAAATCGAGTAAGATTATTCCGGTC
ATGCTGGTGGGGAGGCTATTGCACCGGAAGTCGTACCCGTGGAGGGAGTA
CGCGGAGGCGGCGTTTATCACGTTGGGAGTGACAATTTTTTCTCTGAATG
AGAAAGCTCCGAAGGCAGGGCACGAGGGAGGATCCGATTCAATCCTAGGG
TACTTCCTTTTGGCCCTATACTTGACATGTGACTCCTTCACGAGTCAATG
GCAGGATAAGGTGTTCAAGAAGTTCCATGTCTCGCAGTTCCAGATGATGC
TGGGTATCAATTTGTGCTCAATTGTTTTTACTGGTGCCTCTTTGCTGCAG
ACCGGCCAGGGGGGGACGTCGTGGGCCTTCATTCTTCGACATCCCGACGC
GGCGCAACATGTTTTCCTCCTCTCCCTTTCATCGGCCACGGGTCAATTGT
TTATTTTCTACACGATCAAACAGTTTGGGGCGATTATATTCACCATCATG
ATGACGATTCGGCAGATGCTGAGTATGATCTTGTCCTGCCTCATTTTTGC
GCACCCCATGGCCTGGCCGAGTTTTGTGGGGGCGATGATTTGCTTCACCA
CCATCGGTGTACGTATTCATCGAAACATTCAGCGGGGGAAGCCGCGGAAA
GGTAGTGCAGCGGGAAGTGGGGGGTCGTGAAGTGGAGGAACATGTAGGCA
GTAGAGGACAGGAAAAGTCTTTGTGATTTTAATACGCGAGATACTGTGAT
CAATGGACAACGGGATGTCGGAAAAGTACAGGGAATAGATGGTTCGAATA
TGAAAATAAAATGGGAAAGGAACAACAAAGAATATGTATCCGTAGCTAAC
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Coding sequence (CDS) from alignment at scaffold_2:231828..233377-

>mRNA_704 ID=mRNA_704|Name=jgi.p|Nanoce1779_2|573850|organism=Nannochloropsis oceanica|type=CDS|length=1251bp|location=Sequence derived from alignment at scaffold_2:231828..233377- (Nannochloropsis oceanica)
ATGTCGTCCAACGTGGAAATGACCCATGGGGACATGGAGACGGGCAGCGC
GGGTGGCTTGGAACGGGATTTTGAGAAAGAAAGGCTTCTAGCTTCTTTGA
CACCGCCCCCAGCGACGGGAAGTGGCGCACATAGCGGAGACACATCCAAG
AGTCATGGCAAGGCAGGGATGGTGTTGGGGGGGAGCAGCAGTAGCACCGG
CACGGAGGACAGCATGAGGGGCAAGGCCATCCGTATGGTTGCCTGTTTTG
TGGGGCTCCAAGCCTCGTACATAACTTGGGGACTGGTGCAAGAACGAATC
GTCACTAAGGCATATGGCGAGGGGGACGACGCGGAATTCTTCCCTTCGTC
CGCCTTTTTGGTGTTCGGCAACAGGTTCCTCGCCCTATTCCTGGCCGCCG
CCATTGTCTACTGGCCCTGGTTCGGTCAAGAGGAAGGGACAGGGGCATCA
TCCGCGTCGGTGAGTGGATCGTGCGCCTCACGGGGGTTGAAGGCGCCGTT
GTTACAGTATGCCCCCGCGTCGCTGAGTAACATTTTGAGCAGTTGGGCTC
AGTATGAAGCGTTGAAGTACATATCCTTTCCCACGCAAGTGCTGTCCAAA
TCGAGTAAGATTATTCCGGTCATGCTGGTGGGGAGGCTATTGCACCGGAA
GTCGTACCCGTGGAGGGAGTACGCGGAGGCGGCGTTTATCACGTTGGGAG
TGACAATTTTTTCTCTGAATGAGAAAGCTCCGAAGGCAGGGCACGAGGGA
GGATCCGATTCAATCCTAGGGTACTTCCTTTTGGCCCTATACTTGACATG
TGACTCCTTCACGAGTCAATGGCAGGATAAGGTGTTCAAGAAGTTCCATG
TCTCGCAGTTCCAGATGATGCTGGGTATCAATTTGTGCTCAATTGTTTTT
ACTGGTGCCTCTTTGCTGCAGACCGGCCAGGGGGGGACGTCGTGGGCCTT
CATTCTTCGACATCCCGACGCGGCGCAACATGTTTTCCTCCTCTCCCTTT
CATCGGCCACGGGTCAATTGTTTATTTTCTACACGATCAAACAGTTTGGG
GCGATTATATTCACCATCATGATGACGATTCGGCAGATGCTGAGTATGAT
CTTGTCCTGCCTCATTTTTGCGCACCCCATGGCCTGGCCGAGTTTTGTGG
GGGCGATGATTTGCTTCACCACCATCGGTGTACGTATTCATCGAAACATT
CAGCGGGGGAAGCCGCGGAAAGGTAGTGCAGCGGGAAGTGGGGGGTCGTG
A
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Synonyms
Publications