|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 595451 |
| Track | FilteredModels2 |
| ProteinId | 595365 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_16 | supercontig | scaffold_16:122705..125162 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_7035 ID=mRNA_7035|Name=jgi.p|Nanoce1779_2|595365|organism=Nannochloropsis oceanica|type=mRNA|length=1810bp
GCTCTATTTGCTCGCGTTTTCTTTCGGGGGCACCTTCACAAAAGATGGAC
GAGATCTGTGTTTTATTTGTGGGGCAATGGTTCCCAGCCGAGTCGTCCGA
CACCAAGGCTATGAAGCCGCCCCGCAAAGAGCCACACAAGCAATGGTGTA
GCCTCAATCAGCATACCACGTTTAAGCCACTTCAAAAGCAGGGGTCTTGG
TTTTGGATTAAATGATTTAATAATTGAACTCAGACAGGGAATTGTAACCT
CCCCGTAAGCCGCCCGATGGTGGGTGGGTTCTTGTTGTTCCATTGCTTGT
TGCTTGCCTGTATTGGTCCACCTCAACTCGCTCGCATGCCCCACACACCA
ATGTATACATAGCGTGAATGCATGCACACTCGTCTCTCCTGCTCATGCAT
ACAACTTACAATCCTACCCAAACAGCCGCCGCTCGCCACAGGAGGCAGTG
AATCAATGCCGGTGGCAAGCCGCTGCTTCCTGCCTCTCCTCCTCCTTCTC
CCCTCCCTCGTCCACCCTTTCCTCCTCCCCACCGCCAACACCATCAGCAA
CCCTTCCCGTGCCTCTCCTCTCCGCATGGTTGCCGCCACGATAGGCACAA
AGGACATGGAGACTGTCAATGTCAACCTGGGAGATCGCTCCTATCCCATC
TACATTGGCCCCGGCCTGCTCAGGCAGCCTGAGCTCCTCACCCAGCACGT
GGCGGGGAAACGTTGCATGGTCATCACCAACGATCTCGTCGGCCCTCTCT
ATCTTAAAGCGACTGAAGCAATCCTAGCCACGGCCCCGTCGATCCAACAA
GGTGACACCTGCATCTTACCTGATGGCGAGGCTTACAAAGACATGCCTAC
CCTCATCACAATCATGGATGCTGCCCTCTCAAAGAAACTCGATCGGAAGA
GCACGTTCGTTGCGTTGGGAGGAGGGGTAATCGGAGACATGGTGGGCTTT
GCCGCGGCTATTTATCAAAGAGGGGTAAATTTCATTCAGGTTCCCACCAC
ATTGATGGCCATGGTAGACTCGGCGGTGGGAGGCAAAACAGCCGTGAACC
ACGCCCTAGGCAAGAACATGATCGGTGCATTCTATCAGCCACAGTGCGTC
ATCATCGATACCGATACACTCAACTCCCTTCCGGACCGAGAGCTGGCTTC
GGGCATTGCCGAGATCGTGAAATATGGTCTAATTCGGGACCCCGAACTCT
TCGTCTGGCTGGAGGCGAACATGGAAAAACTCGTTGCCCGCGAACCGGCC
GCCTTGGCGCATGCCATCAAAAGATCATGTGAAAACAAAGCGGCCATCGT
GGCGCTCGATGAGCGGGAGGGCGATGTGGGGATAAGGGCAACGCTGAACT
TGGGCCATACGTTTGGGCATGCCGTTGAAACGGGTTTCGGCTACGGAAAA
TGGCTCCATGGTGAGGCCGTAAGCGTTGGGATGGTGATGGCGGTGGATAT
GTCTGTTAGACTGGGTTGGGTGGATCAGGCGTTGTACGGTCGAACAGTCA
AGCTGTTGGAACGCGCGAACTTGCCTGTTGCGCTCCCAGAAGGGAGTGGG
ATGACGCTGGAGAAGTTCGAGGAGACGATGAGTATTGATAAGAAAGTGAG
TGATGGGGTGTTGAGGCTGATTTTGTTGAAGGGTGCCTTGGGTCAGTGTG
TTTTTACTAAGGACTATGATGCGAAGGTGTTAAGAGAAACAATTCAGGCG
TACTGTCGGTGAGGTGGAGATGAAAAGGAAAATAGATGAAAGAAAAAGAT
AACTGGACGGAAGGAGTAGGATCTTGATAGAAGATAAGAAAAAACAGAGT
TCGTGGCTGT back to topprotein sequence of jgi.p|Nanoce1779_2|595365 >mRNA_7035-protein ID=mRNA_7035-protein|Name=jgi.p|Nanoce1779_2|595365|organism=Nannochloropsis oceanica|type=polypeptide|length=447bp
MHTRLSCSCIQLTILPKQPPLATGGSESMPVASRCFLPLLLLLPSLVHPF
LLPTANTISNPSRASPLRMVAATIGTKDMETVNVNLGDRSYPIYIGPGLL
RQPELLTQHVAGKRCMVITNDLVGPLYLKATEAILATAPSIQQGDTCILP
DGEAYKDMPTLITIMDAALSKKLDRKSTFVALGGGVIGDMVGFAAAIYQR
GVNFIQVPTTLMAMVDSAVGGKTAVNHALGKNMIGAFYQPQCVIIDTDTL
NSLPDRELASGIAEIVKYGLIRDPELFVWLEANMEKLVAREPAALAHAIK
RSCENKAAIVALDEREGDVGIRATLNLGHTFGHAVETGFGYGKWLHGEAV
SVGMVMAVDMSVRLGWVDQALYGRTVKLLERANLPVALPEGSGMTLEKFE
ETMSIDKKVSDGVLRLILLKGALGQCVFTKDYDAKVLRETIQAYCR* back to topmRNA from alignment at scaffold_16:122705..125162+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_7035 ID=mRNA_7035|Name=jgi.p|Nanoce1779_2|595365|organism=Nannochloropsis oceanica|type=mRNA|length=2458bp|location=Sequence derived from alignment at scaffold_16:122705..125162+ (Nannochloropsis oceanica)
GCTCTATTTGCTCGCGTTTTCTTTCGGGGGCACCTTCACAAAAGATGGAC
GAGATCTGTGTTTTATTTGTGGGGCAATGGTTCCCAGCCGAGTCGTCCGA
CACCAAGGCTATGAAGCCGCCCCGCAAAGAGCCACACAAGCAATGGTGTA
GCCTCAATCAGCATACCACGTTTAAGCCACTTCAAAAGCAGGGGTCTTGG
TTTTGGATTAAATGATTTAATAATTGAACTCAGACAGGGAATTGTAACCT
CCCCGTAAGCCGCCCGATGGTGGGTGGGTTCTTGTTGTTCCATTGCTTGT
TGCTTGCCTGTATTGGTCCACCTCAACTCGCTCGCATGCCCCACACACCA
ATGTATACATAGCGTGAATGCATGCACACTCGTCTCTCCTGCTCATGCAT
ACAACTTACAATCCTACCCAAACAGCCGCCGCTCGCCACAGGAGGCAGTG
AATCAATGCCGGTGGCAAGCCGCTGCTTCCTGCCTCTCCTCCTCCTTCTC
CCCTCCCTCGTCCACCCTTTCCTCCTCCCCACCGCCAACACCATCAGCAA
CCCTTCCCGTGCCTCTCCTCTCCGCATGGTTGCCGCCACGATAGGCACAA
AGGACATGGAGACTGTCAATGTCAACCTGGGAGATCGCTCCTATCCCATC
TACATTGGCCCCGGCCTGCTCAGGCAGCCTGAGCTCCTCACCCAGCACGT
GGCGGGGAAACGTTGCATGGTCATCACCAACGATGTGCGTCTCAATCCCT
CTTTTCTATTGTTCCAGACATGTACATACTGTCCTCCCTCCTCTCTTCTC
TTTTTCCTTGTGTGTGACTTTCTAACTTGTCGTGGCCACTGACAGATCTT
GTGTGTCTGATCCCTCCCTCCCTCCCCCCCCTCCCTCCCCACATCCCTTC
TTTCATTCTTCCGTTCTCTCATAGCTCGTCGGCCCTCTCTATCTTAAAGC
GACTGAAGCAATCCTAGCCACGGCCCCGTCGATCCAACAAGGTGACACCT
GCATCTTACCTGATGGCGAGGCTTACAAAGACATGCCTACCCTCATCACA
ATCATGGATGCTGCCCTCTCAAAGAAACTCGATCGGAAGAGCACGTTCGT
TGCGTTGGGAGGAGGGGTAATCGGAGACATGGTGGGCTTTGCCGCGGCTA
TTTATCAAAGAGGGGTAAATTTCATTCAGGTTCCCACCACATTGATGGCC
ATGGTAGACTCGGCGGTGGGAGGCAAAACAGGTGAGGAGGGAGGGAGGGA
AAGAGGGAGGGGTGGAAGGCAAGACGGATGTATGTATGTTTTTGGCCGAT
ATGAGTCAAGAGGGGAGGGAGAGAAAGCGGGATTCATGTAATGCACTATT
TTGACTCACGTTCCAGGTCACGAGTCCAGCTCTCTATCAGCGCCATTATA
GTACTGTCCTTACGCGAAGTGAAGGAAATCTCATAGGTCCCTCCCTCTCT
CTCTCCCTCTCAAGCCGTGAACCACGCCCTAGGCAAGAACATGATCGGTG
CATTCTATCAGCCACAGTGCGTCATCATCGATACCGATACACTCAACTCC
CTTCCGGACCGAGAGCTGGCTTCGGGCATTGCCGAGATCGTGAAATATGG
TCTAATTCGGTACGCCCTTCGCTTTCTCCCGCCGTCGTTCCCTCCCTCCT
TTTTTCTTACCCCTGTCTACGTGCATCTCGCCCTCCCTGTATGTGTTTTG
ATGAGTGGGCGAACAATCTCGCATACACCATTTCAAGCAAGGCTATGAAT
AAAAACCGAAACCCAAAAACAAAGACAAATCAGTGAACTAATCTTACTCT
CTCTCGCCGCACTTTATACATTCTTTATAAAAAGGGACCCCGAACTCTTC
GTCTGGCTGGAGGCGAACATGGAAAAACTCGTTGCCCGCGAACCGGCCGC
CTTGGCGCATGCCATCAAAAGATCATGTGAAAACAAAGCGGCCATCGTGG
CGCTCGATGAGCGGGAGGGCGATGTGGGGATAAGGGCAACGCTGAACTTG
GGCCATACGTTTGGGCATGCCGTTGAAACGGGTTTCGGCTACGGAAAATG
GCTCCATGGTGAGGCCGTAAGCGTTGGGATGGTGATGGCGGTGGATATGT
CTGTTAGACTGGGTTGGGTGGATCAGGCGTTGTACGGTCGAACAGTCAAG
CTGTTGGAACGCGCGAACTTGCCTGTTGCGCTCCCAGAAGGGAGTGGGAT
GACGCTGGAGAAGTTCGAGGAGACGATGAGTATTGATAAGAAAGTGAGTG
ATGGGGTGTTGAGGCTGATTTTGTTGAAGGGTGCCTTGGGTCAGTGTGTT
TTTACTAAGGACTATGATGCGAAGGTGTTAAGAGAAACAATTCAGGCGTA
CTGTCGGTGAGGTGGAGATGAAAAGGAAAATAGATGAAAGAAAAAGATAA
CTGGACGGAAGGAGTAGGATCTTGATAGAAGATAAGAAAAAACAGAGTTC
GTGGCTGT back to topCoding sequence (CDS) from alignment at scaffold_16:122705..125162+ >mRNA_7035 ID=mRNA_7035|Name=jgi.p|Nanoce1779_2|595365|organism=Nannochloropsis oceanica|type=CDS|length=5364bp|location=Sequence derived from alignment at scaffold_16:122705..125162+ (Nannochloropsis oceanica)
ATGCACACTCGTCTCTCCTGCTCATGCATACAACTTACAATCCTACCCAA
ACAGCCGCCGCTCGCCACAGGAGGCAGTGAATCAATGCCGGTGGCAAGCC
GCTGCTTCCTGCCTCTCCTCCTCCTTCTCCCCTCCCTCGTCCACCCTTTC
CTCCTCCCCACCGCCAACACCATCAGCAACCCTTCCCGTGCCTCTCCTCT
CCGCATGGTTGCCGCCACGATAGGCACAAAGGACATGGAGACTGTCAATG
TCAACCTGGGAGATCGCTCCTATCCCATCTACATTGGCCCCGGCCTGCTC
AGGCAGCCTGAGCTCCTCACCCAGCACGTGGCGGGGAAACGTTGCATGGT
CATCACCAACGATCTCGTCGGCCCTCTCTATCTTAAAGCGACTGAAGCAA
TCCTAGCCACGGCCCCGTCGATCCAACAAGGTGACACCTGCATCTTACCT
GATGGCGAGGCTTACAAAGACATGCCTACCCTCATCACAATCATGGATGC
TGCCCTCTCAAAGAAACTCGATCGGAAGAGCACGTTCGTTGCGTTGGGAG
GAGGGGTAATCGGAGACATGGTGGGCTTTGCCGCGGCTATTTATCAAAGA
GGGGTAAATTTCATTCAGGTTCCCACCACATTGATGGCCATGGTAGACTC
GGCGGTGGGAGGCAAAACAGCCGTGAACCACGCCCTAGGCAAGAACATGA
TCGGTGCATTCTATCAGCCACAGTGCGTCATCATCGATACCGATACACTC
AACTCCCTTCCGGACCGAGAGCTGGCTTCGGGCATTGCCGAGATCGTGAA
ATATGGTCTAATTCGGGACCCCGAACTCTTCGTCTGGCTGGAGGCGAACA
TGGAAAAACTCGTTGCCCGCGAACCGGCCGCCTTGGCGCATGCCATCAAA
AGATCATGTGAAAACAAAGCGGCCATCGTGGCGCTCGATGAGCGGGAGGG
CGATGTGGGGATAAGGGCAACGCTGAACTTGGGCCATACGTTTGGGCATG
CCGTTGAAACGGGTTTCGGCTACGGAAAATGGCTCCATGGTGAGGCCGTA
AGCGTTGGGATGGTGATGGCGGTGGATATGTCTGTTAGACTGGGTTGGGT
GGATCAGGCGTTGTACGGTCGAACAGTCAAGCTGTTGGAACGCGCGAACT
TGCCTGTTGCGCTCCCAGAAGGGAGTGGGATGACGCTGGAGAAGTTCGAG
GAGACGATGAGTATTGATAAGAAAGTGAGTGATGGGGTGTTGAGGCTGAT
TTTGTTGAAGGGTGCCTTGGGTCAGTGTGTTTTTACTAAGGACTATGATG
CGAAGGTGTTAAGAGAAACAATTCAGGCGTACTGTCGGTGAATGCACACT
CGTCTCTCCTGCTCATGCATACAACTTACAATCCTACCCAAACAGCCGCC
GCTCGCCACAGGAGGCAGTGAATCAATGCCGGTGGCAAGCCGCTGCTTCC
TGCCTCTCCTCCTCCTTCTCCCCTCCCTCGTCCACCCTTTCCTCCTCCCC
ACCGCCAACACCATCAGCAACCCTTCCCGTGCCTCTCCTCTCCGCATGGT
TGCCGCCACGATAGGCACAAAGGACATGGAGACTGTCAATGTCAACCTGG
GAGATCGCTCCTATCCCATCTACATTGGCCCCGGCCTGCTCAGGCAGCCT
GAGCTCCTCACCCAGCACGTGGCGGGGAAACGTTGCATGGTCATCACCAA
CGATCTCGTCGGCCCTCTCTATCTTAAAGCGACTGAAGCAATCCTAGCCA
CGGCCCCGTCGATCCAACAAGGTGACACCTGCATCTTACCTGATGGCGAG
GCTTACAAAGACATGCCTACCCTCATCACAATCATGGATGCTGCCCTCTC
AAAGAAACTCGATCGGAAGAGCACGTTCGTTGCGTTGGGAGGAGGGGTAA
TCGGAGACATGGTGGGCTTTGCCGCGGCTATTTATCAAAGAGGGGTAAAT
TTCATTCAGGTTCCCACCACATTGATGGCCATGGTAGACTCGGCGGTGGG
AGGCAAAACAGCCGTGAACCACGCCCTAGGCAAGAACATGATCGGTGCAT
TCTATCAGCCACAGTGCGTCATCATCGATACCGATACACTCAACTCCCTT
CCGGACCGAGAGCTGGCTTCGGGCATTGCCGAGATCGTGAAATATGGTCT
AATTCGGGACCCCGAACTCTTCGTCTGGCTGGAGGCGAACATGGAAAAAC
TCGTTGCCCGCGAACCGGCCGCCTTGGCGCATGCCATCAAAAGATCATGT
GAAAACAAAGCGGCCATCGTGGCGCTCGATGAGCGGGAGGGCGATGTGGG
GATAAGGGCAACGCTGAACTTGGGCCATACGTTTGGGCATGCCGTTGAAA
CGGGTTTCGGCTACGGAAAATGGCTCCATGGTGAGGCCGTAAGCGTTGGG
ATGGTGATGGCGGTGGATATGTCTGTTAGACTGGGTTGGGTGGATCAGGC
GTTGTACGGTCGAACAGTCAAGCTGTTGGAACGCGCGAACTTGCCTGTTG
CGCTCCCAGAAGGGAGTGGGATGACGCTGGAGAAGTTCGAGGAGACGATG
AGTATTGATAAGAAAGTGAGTGATGGGGTGTTGAGGCTGATTTTGTTGAA
GGGTGCCTTGGGTCAGTGTGTTTTTACTAAGGACTATGATGCGAAGGTGT
TAAGAGAAACAATTCAGGCGTACTGTCGGTGAATGCACACTCGTCTCTCC
TGCTCATGCATACAACTTACAATCCTACCCAAACAGCCGCCGCTCGCCAC
AGGAGGCAGTGAATCAATGCCGGTGGCAAGCCGCTGCTTCCTGCCTCTCC
TCCTCCTTCTCCCCTCCCTCGTCCACCCTTTCCTCCTCCCCACCGCCAAC
ACCATCAGCAACCCTTCCCGTGCCTCTCCTCTCCGCATGGTTGCCGCCAC
GATAGGCACAAAGGACATGGAGACTGTCAATGTCAACCTGGGAGATCGCT
CCTATCCCATCTACATTGGCCCCGGCCTGCTCAGGCAGCCTGAGCTCCTC
ACCCAGCACGTGGCGGGGAAACGTTGCATGGTCATCACCAACGATCTCGT
CGGCCCTCTCTATCTTAAAGCGACTGAAGCAATCCTAGCCACGGCCCCGT
CGATCCAACAAGGTGACACCTGCATCTTACCTGATGGCGAGGCTTACAAA
GACATGCCTACCCTCATCACAATCATGGATGCTGCCCTCTCAAAGAAACT
CGATCGGAAGAGCACGTTCGTTGCGTTGGGAGGAGGGGTAATCGGAGACA
TGGTGGGCTTTGCCGCGGCTATTTATCAAAGAGGGGTAAATTTCATTCAG
GTTCCCACCACATTGATGGCCATGGTAGACTCGGCGGTGGGAGGCAAAAC
AGCCGTGAACCACGCCCTAGGCAAGAACATGATCGGTGCATTCTATCAGC
CACAGTGCGTCATCATCGATACCGATACACTCAACTCCCTTCCGGACCGA
GAGCTGGCTTCGGGCATTGCCGAGATCGTGAAATATGGTCTAATTCGGGA
CCCCGAACTCTTCGTCTGGCTGGAGGCGAACATGGAAAAACTCGTTGCCC
GCGAACCGGCCGCCTTGGCGCATGCCATCAAAAGATCATGTGAAAACAAA
GCGGCCATCGTGGCGCTCGATGAGCGGGAGGGCGATGTGGGGATAAGGGC
AACGCTGAACTTGGGCCATACGTTTGGGCATGCCGTTGAAACGGGTTTCG
GCTACGGAAAATGGCTCCATGGTGAGGCCGTAAGCGTTGGGATGGTGATG
GCGGTGGATATGTCTGTTAGACTGGGTTGGGTGGATCAGGCGTTGTACGG
TCGAACAGTCAAGCTGTTGGAACGCGCGAACTTGCCTGTTGCGCTCCCAG
AAGGGAGTGGGATGACGCTGGAGAAGTTCGAGGAGACGATGAGTATTGAT
AAGAAAGTGAGTGATGGGGTGTTGAGGCTGATTTTGTTGAAGGGTGCCTT
GGGTCAGTGTGTTTTTACTAAGGACTATGATGCGAAGGTGTTAAGAGAAA
CAATTCAGGCGTACTGTCGGTGAATGCACACTCGTCTCTCCTGCTCATGC
ATACAACTTACAATCCTACCCAAACAGCCGCCGCTCGCCACAGGAGGCAG
TGAATCAATGCCGGTGGCAAGCCGCTGCTTCCTGCCTCTCCTCCTCCTTC
TCCCCTCCCTCGTCCACCCTTTCCTCCTCCCCACCGCCAACACCATCAGC
AACCCTTCCCGTGCCTCTCCTCTCCGCATGGTTGCCGCCACGATAGGCAC
AAAGGACATGGAGACTGTCAATGTCAACCTGGGAGATCGCTCCTATCCCA
TCTACATTGGCCCCGGCCTGCTCAGGCAGCCTGAGCTCCTCACCCAGCAC
GTGGCGGGGAAACGTTGCATGGTCATCACCAACGATCTCGTCGGCCCTCT
CTATCTTAAAGCGACTGAAGCAATCCTAGCCACGGCCCCGTCGATCCAAC
AAGGTGACACCTGCATCTTACCTGATGGCGAGGCTTACAAAGACATGCCT
ACCCTCATCACAATCATGGATGCTGCCCTCTCAAAGAAACTCGATCGGAA
GAGCACGTTCGTTGCGTTGGGAGGAGGGGTAATCGGAGACATGGTGGGCT
TTGCCGCGGCTATTTATCAAAGAGGGGTAAATTTCATTCAGGTTCCCACC
ACATTGATGGCCATGGTAGACTCGGCGGTGGGAGGCAAAACAGCCGTGAA
CCACGCCCTAGGCAAGAACATGATCGGTGCATTCTATCAGCCACAGTGCG
TCATCATCGATACCGATACACTCAACTCCCTTCCGGACCGAGAGCTGGCT
TCGGGCATTGCCGAGATCGTGAAATATGGTCTAATTCGGGACCCCGAACT
CTTCGTCTGGCTGGAGGCGAACATGGAAAAACTCGTTGCCCGCGAACCGG
CCGCCTTGGCGCATGCCATCAAAAGATCATGTGAAAACAAAGCGGCCATC
GTGGCGCTCGATGAGCGGGAGGGCGATGTGGGGATAAGGGCAACGCTGAA
CTTGGGCCATACGTTTGGGCATGCCGTTGAAACGGGTTTCGGCTACGGAA
AATGGCTCCATGGTGAGGCCGTAAGCGTTGGGATGGTGATGGCGGTGGAT
ATGTCTGTTAGACTGGGTTGGGTGGATCAGGCGTTGTACGGTCGAACAGT
CAAGCTGTTGGAACGCGCGAACTTGCCTGTTGCGCTCCCAGAAGGGAGTG
GGATGACGCTGGAGAAGTTCGAGGAGACGATGAGTATTGATAAGAAAGTG
AGTGATGGGGTGTTGAGGCTGATTTTGTTGAAGGGTGCCTTGGGTCAGTG
TGTTTTTACTAAGGACTATGATGCGAAGGTGTTAAGAGAAACAATTCAGG
CGTACTGTCGGTGA back to top
|