jgi.p|Nanoce1779_2|631596, mRNA_7033 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|631596
Unique Name	mRNA_7033
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1752
Alignment location	scaffold_16:118476..120321 -

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Properties


Property Name	Value
TranscriptId	631682
Track	FilteredModels2
ProteinId	631596

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_16	supercontig	scaffold_16:118476..120321 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|631596	gene_7033	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|631596	mRNA_7033-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7033	CDS_7033	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_16:118476..120321-
coding sequence from alignment at scaffold_16:118476..120321-

mRNA sequence

>mRNA_7033 ID=mRNA_7033|Name=jgi.p|Nanoce1779_2|631596|organism=Nannochloropsis oceanica|type=mRNA|length=1752bp
TGGTGGCCGCCTGACAAGAGGAGGCGCGGAGAGATGCGCGCCAGTGTATC
TGTGGTTGGGTCTGGGGCGAGTGTTGTCGGTCAGAAAAGGATGAGTAGGG
AACGTGCGGCAGCGCTATCCTGCTGTTTCTATCCTTGCAGGCTCTTTGAC
TAATATGACGCATGTGCATAACTACAGGAACACGGCCAACAAGAGTGCGA
GCACAAGGAAGCCAACATGCTCGAATCCGTTGCGCTGCTGGGACACACGT
CCTTTGAAGGCCAGATAAGCGCCGTTCAGACACACCATGATTTTGTGGCT
GTTGCATCATCTCGTCTCGAAGGCAGCACGTGGGACGGCGCGGTTACCCT
ATTACGTGCCATGGCCTTCGCTTCCTCCCCAGTCGTTACCCTCGAGCTCT
CACGCCTCGCAGTGCATGGCACGTCGTACGGTATTCCAGCCTTGACATGG
TGCGGCGCTCCTGCCTTCTCTCCCTCCTTAGCCACTCAACAACTTCCTCT
CCTGGCCGCCGCTCAAGATAATGGTGACGTTCTTCTCTTGGCCCTCAAGT
ATGAAGGGGTCAATGCCACCCTCCTTCCTACCACTACCCTCGCCGACCAT
GACGACCTCGTCTCAGCCCTAGCAGCATCACCGGAGGGGGATCTCCTCGC
AACGGGCGGGTGGGATTGCACGGTGAAGGTTTGGGCGTTGAGTGGGAGTA
CTGTGAGACCTTTAATGAACTGGCAGGGACATAGCGATCAGGTGACGGCC
TTGGCGTGGCGGGGCGGAGCGGGAGGGAGGGAGGGAGGGAGGGCAGGGGG
GTACCAGGTGGCATCGGCAGGGAAGGATGGATGCGTGAAGCTGTGGGATG
TGAGGATGGAAGGATGTAAGCGAGAGTGCTTGCGGTTGGTCGATGCCCAG
GCACAGATGCCATTAGCTCTGGCATGGGCCACGTCTACCTGTCCTTCCTC
GTCCTCTTCTTTGCTTCCTCCTTCGGCGTTGGAGGGATCTAATGCTATGC
ATATCGATGAAACCCCGATTGAAAAGAAAGTTGAGAATGAGAATGATGTG
CTCCTGTCAGTGGCGTTTGACAACGGAAGTGTCAGTTTGTTGGACCTGCG
AATGCTACGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAGGA
TTGTCAGCTCTTCAGCTGTCAAGGCACACAAAACGAGGGTAAATGCTTTG
GCATTTTCACCTTGTGCTTCTTCTTCCTCTCCACCTCTACTTGCATCTGG
AGGAGACGATGGCCAGGTGGTGCTGACGCCACTTGGATTCGAAGAAGATG
GAAAAGGACGAAGAGCCACGTTAGCATCAAAAGGTGGCAAACAAGAAGGA
TCGGGCATTCCCATCGCTGCTCACATACAGCACACGGATTACGTGCGTGG
GCTGGGCTGGTTGGCGACAGCAGGAGCGGGAGGGCAAGGGGAAGGAACAG
TTGCAGCAGCTGCAGCGTCGCCACTGTCATCGCTGCCACGACCAGGAGTG
TTATTGAGTGGAGGGTGGGATGGTCGGCTCAAAGGGTGGGCGTGGGGACA
GGAGGGACAGATGACATGATAATTAATTATCGAAAGAAGGGAGGGGATAT
TAATGAAACCATTGATGGCGTTGGAGATCTGTGGCCGCAAACGTCAACAT
ATTATATTGTGGAGGGAAAGGGATGTATTTTGCAACGGATCACTTTGCTT
CATTGCCTGGCTTGAATCGATCCTTATTTTTTCTAAATTGCTCATTATGT
CG

protein sequence of jgi.p|Nanoce1779_2|631596

>mRNA_7033-protein ID=mRNA_7033-protein|Name=jgi.p|Nanoce1779_2|631596|organism=Nannochloropsis oceanica|type=polypeptide|length=451bp
MLESVALLGHTSFEGQISAVQTHHDFVAVASSRLEGSTWDGAVTLLRAMA
FASSPVVTLELSRLAVHGTSYGIPALTWCGAPAFSPSLATQQLPLLAAAQ
DNGDVLLLALKYEGVNATLLPTTTLADHDDLVSALAASPEGDLLATGGWD
CTVKVWALSGSTVRPLMNWQGHSDQVTALAWRGGAGGREGGRAGGYQVAS
AGKDGCVKLWDVRMEGCKRECLRLVDAQAQMPLALAWATSTCPSSSSSLL
PPSALEGSNAMHIDETPIEKKVENENDVLLSVAFDNGSVSLLDLRMLRGG
GGGGGGGGGGRIVSSSAVKAHKTRVNALAFSPCASSSSPPLLASGGDDGQ
VVLTPLGFEEDGKGRRATLASKGGKQEGSGIPIAAHIQHTDYVRGLGWLA
TAGAGGQGEGTVAAAAASPLSSLPRPGVLLSGGWDGRLKGWAWGQEGQMT
*

mRNA from alignment at scaffold_16:118476..120321-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7033 ID=mRNA_7033|Name=jgi.p|Nanoce1779_2|631596|organism=Nannochloropsis oceanica|type=mRNA|length=1846bp|location=Sequence derived from alignment at scaffold_16:118476..120321- (Nannochloropsis oceanica)
TGGTGGCCGCCTGACAAGAGGAGGCGCGGAGAGATGCGCGCCAGTGTATC
TGTGGTTGGGTCTGGGGCGAGTGTTGTCGGTCAGAAAAGGATGAGTAGGG
AACGTGCGGCAGCGCTATCCTGCTGTTTCTATCCTTGCAGGCTCTTTGAC
TAATATGACGCATGTGCATAACTACAGGAACACGGCCAACAAGAGTGCGA
GCACAAGGAAGCCAACATGCTCGAATCCGTTGCGCTGCTGGGACACACGT
CCTTTGAAGGCCAGGTACGTGTGATGGAAGATGGGAAGGAAGGAGGAAAG
GAAGGAGGGGAGGAGGTTAGATCCCTCATATCGCGCTCCTAAACCGTCCC
ATGAACAGATAAGCGCCGTTCAGACACACCATGATTTTGTGGCTGTTGCA
TCATCTCGTCTCGAAGGCAGCACGTGGGACGGCGCGGTTACCCTATTACG
TGCCATGGCCTTCGCTTCCTCCCCAGTCGTTACCCTCGAGCTCTCACGCC
TCGCAGTGCATGGCACGTCGTACGGTATTCCAGCCTTGACATGGTGCGGC
GCTCCTGCCTTCTCTCCCTCCTTAGCCACTCAACAACTTCCTCTCCTGGC
CGCCGCTCAAGATAATGGTGACGTTCTTCTCTTGGCCCTCAAGTATGAAG
GGGTCAATGCCACCCTCCTTCCTACCACTACCCTCGCCGACCATGACGAC
CTCGTCTCAGCCCTAGCAGCATCACCGGAGGGGGATCTCCTCGCAACGGG
CGGGTGGGATTGCACGGTGAAGGTTTGGGCGTTGAGTGGGAGTACTGTGA
GACCTTTAATGAACTGGCAGGGACATAGCGATCAGGTGACGGCCTTGGCG
TGGCGGGGCGGAGCGGGAGGGAGGGAGGGAGGGAGGGCAGGGGGGTACCA
GGTGGCATCGGCAGGGAAGGATGGATGCGTGAAGCTGTGGGATGTGAGGA
TGGAAGGATGTAAGCGAGAGTGCTTGCGGTTGGTCGATGCCCAGGCACAG
ATGCCATTAGCTCTGGCATGGGCCACGTCTACCTGTCCTTCCTCGTCCTC
TTCTTTGCTTCCTCCTTCGGCGTTGGAGGGATCTAATGCTATGCATATCG
ATGAAACCCCGATTGAAAAGAAAGTTGAGAATGAGAATGATGTGCTCCTG
TCAGTGGCGTTTGACAACGGAAGTGTCAGTTTGTTGGACCTGCGAATGCT
ACGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAGGATTGTCA
GCTCTTCAGCTGTCAAGGCACACAAAACGAGGGTAAATGCTTTGGCATTT
TCACCTTGTGCTTCTTCTTCCTCTCCACCTCTACTTGCATCTGGAGGAGA
CGATGGCCAGGTGGTGCTGACGCCACTTGGATTCGAAGAAGATGGAAAAG
GACGAAGAGCCACGTTAGCATCAAAAGGTGGCAAACAAGAAGGATCGGGC
ATTCCCATCGCTGCTCACATACAGCACACGGATTACGTGCGTGGGCTGGG
CTGGTTGGCGACAGCAGGAGCGGGAGGGCAAGGGGAAGGAACAGTTGCAG
CAGCTGCAGCGTCGCCACTGTCATCGCTGCCACGACCAGGAGTGTTATTG
AGTGGAGGGTGGGATGGTCGGCTCAAAGGGTGGGCGTGGGGACAGGAGGG
ACAGATGACATGATAATTAATTATCGAAAGAAGGGAGGGGATATTAATGA
AACCATTGATGGCGTTGGAGATCTGTGGCCGCAAACGTCAACATATTATA
TTGTGGAGGGAAAGGGATGTATTTTGCAACGGATCACTTTGCTTCATTGC
CTGGCTTGAATCGATCCTTATTTTTTCTAAATTGCTCATTATGTCG

Coding sequence (CDS) from alignment at scaffold_16:118476..120321-

>mRNA_7033 ID=mRNA_7033|Name=jgi.p|Nanoce1779_2|631596|organism=Nannochloropsis oceanica|type=CDS|length=2706bp|location=Sequence derived from alignment at scaffold_16:118476..120321- (Nannochloropsis oceanica)
ATAAGCGCCGTTCAGACACACCATGATTTTGTGGCTGTTGCATCATCTCG
TCTCGAAGGCAGCACGTGGGACGGCGCGGTTACCCTATTACGTGCCATGG
CCTTCGCTTCCTCCCCAGTCGTTACCCTCGAGCTCTCACGCCTCGCAGTG
CATGGCACGTCGTACGGTATTCCAGCCTTGACATGGTGCGGCGCTCCTGC
CTTCTCTCCCTCCTTAGCCACTCAACAACTTCCTCTCCTGGCCGCCGCTC
AAGATAATGGTGACGTTCTTCTCTTGGCCCTCAAGTATGAAGGGGTCAAT
GCCACCCTCCTTCCTACCACTACCCTCGCCGACCATGACGACCTCGTCTC
AGCCCTAGCAGCATCACCGGAGGGGGATCTCCTCGCAACGGGCGGGTGGG
ATTGCACGGTGAAGGTTTGGGCGTTGAGTGGGAGTACTGTGAGACCTTTA
ATGAACTGGCAGGGACATAGCGATCAGGTGACGGCCTTGGCGTGGCGGGG
CGGAGCGGGAGGGAGGGAGGGAGGGAGGGCAGGGGGGTACCAGGTGGCAT
CGGCAGGGAAGGATGGATGCGTGAAGCTGTGGGATGTGAGGATGGAAGGA
TGTAAGCGAGAGTGCTTGCGGTTGGTCGATGCCCAGGCACAGATGCCATT
AGCTCTGGCATGGGCCACGTCTACCTGTCCTTCCTCGTCCTCTTCTTTGC
TTCCTCCTTCGGCGTTGGAGGGATCTAATGCTATGCATATCGATGAAACC
CCGATTGAAAAGAAAGTTGAGAATGAGAATGATGTGCTCCTGTCAGTGGC
GTTTGACAACGGAAGTGTCAGTTTGTTGGACCTGCGAATGCTACGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAGGATTGTCAGCTCTTCA
GCTGTCAAGGCACACAAAACGAGGGTAAATGCTTTGGCATTTTCACCTTG
TGCTTCTTCTTCCTCTCCACCTCTACTTGCATCTGGAGGAGACGATGGCC
AGGTGGTGCTGACGCCACTTGGATTCGAAGAAGATGGAAAAGGACGAAGA
GCCACGTTAGCATCAAAAGGTGGCAAACAAGAAGGATCGGGCATTCCCAT
CGCTGCTCACATACAGCACACGGATTACGTGCGTGGGCTGGGCTGGTTGG
CGACAGCAGGAGCGGGAGGGCAAGGGGAAGGAACAGTTGCAGCAGCTGCA
GCGTCGCCACTGTCATCGCTGCCACGACCAGGAGTGTTATTGAGTGGAGG
GTGGGATGGTCGGCTCAAAGGGTGGGCGTGGGGACAGGAGGGACAGATGA
CATGAATGCTCGAATCCGTTGCGCTGCTGGGACACACGTCCTTTGAAGGC
CAGATAAGCGCCGTTCAGACACACCATGATTTTGTGGCTGTTGCATCATC
TCGTCTCGAAGGCAGCACGTGGGACGGCGCGGTTACCCTATTACGTGCCA
TGGCCTTCGCTTCCTCCCCAGTCGTTACCCTCGAGCTCTCACGCCTCGCA
GTGCATGGCACGTCGTACGGTATTCCAGCCTTGACATGGTGCGGCGCTCC
TGCCTTCTCTCCCTCCTTAGCCACTCAACAACTTCCTCTCCTGGCCGCCG
CTCAAGATAATGGTGACGTTCTTCTCTTGGCCCTCAAGTATGAAGGGGTC
AATGCCACCCTCCTTCCTACCACTACCCTCGCCGACCATGACGACCTCGT
CTCAGCCCTAGCAGCATCACCGGAGGGGGATCTCCTCGCAACGGGCGGGT
GGGATTGCACGGTGAAGGTTTGGGCGTTGAGTGGGAGTACTGTGAGACCT
TTAATGAACTGGCAGGGACATAGCGATCAGGTGACGGCCTTGGCGTGGCG
GGGCGGAGCGGGAGGGAGGGAGGGAGGGAGGGCAGGGGGGTACCAGGTGG
CATCGGCAGGGAAGGATGGATGCGTGAAGCTGTGGGATGTGAGGATGGAA
GGATGTAAGCGAGAGTGCTTGCGGTTGGTCGATGCCCAGGCACAGATGCC
ATTAGCTCTGGCATGGGCCACGTCTACCTGTCCTTCCTCGTCCTCTTCTT
TGCTTCCTCCTTCGGCGTTGGAGGGATCTAATGCTATGCATATCGATGAA
ACCCCGATTGAAAAGAAAGTTGAGAATGAGAATGATGTGCTCCTGTCAGT
GGCGTTTGACAACGGAAGTGTCAGTTTGTTGGACCTGCGAATGCTACGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAGGATTGTCAGCTCT
TCAGCTGTCAAGGCACACAAAACGAGGGTAAATGCTTTGGCATTTTCACC
TTGTGCTTCTTCTTCCTCTCCACCTCTACTTGCATCTGGAGGAGACGATG
GCCAGGTGGTGCTGACGCCACTTGGATTCGAAGAAGATGGAAAAGGACGA
AGAGCCACGTTAGCATCAAAAGGTGGCAAACAAGAAGGATCGGGCATTCC
CATCGCTGCTCACATACAGCACACGGATTACGTGCGTGGGCTGGGCTGGT
TGGCGACAGCAGGAGCGGGAGGGCAAGGGGAAGGAACAGTTGCAGCAGCT
GCAGCGTCGCCACTGTCATCGCTGCCACGACCAGGAGTGTTATTGAGTGG
AGGGTGGGATGGTCGGCTCAAAGGGTGGGCGTGGGGACAGGAGGGACAGA
TGACATGAATGCTCGAATCCGTTGCGCTGCTGGGACACACGTCCTTTGAA
GGCCAG

Synonyms

Publications