jgi.p|Nanoce1779_2|100550, mRNA_7032 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|100550
Unique NamemRNA_7032
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length416
Alignment locationscaffold_16:117715..118130 -

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Properties
Property NameValue
TranscriptId100636
TrackFilteredModels2
ProteinId100550
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:117715..118130 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|100550gene_7032Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|100550mRNA_7032-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7032CDS_7032Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7032 ID=mRNA_7032|Name=jgi.p|Nanoce1779_2|100550|organism=Nannochloropsis oceanica|type=mRNA|length=416bp
ACAACAATAGCAGCGACTAGGAGCCTGCGTGCATGTCCTCGGACAGCGCA
ACCCCCGCCGATTACATCCAAGCCGACGAGTTAGCCGCCGTCATCCACCT
GGCAACGGCAACGTCTATCATGGAGGAAGCAGCAGCAGCAGCGCCAGCAG
CGACAGGCACCAACAATGGCACCATTGACACCTCTCAAGCGAATATAGAG
GGGGAGGGAGGGGAGGAAGGCGGCATCAGCAAGCGGATGCTCAAGAAAAT
GGCCAAGGGCAAGCTCAAGGAGAAAAAAGACAAGAAGCCCCCGTAAGAAC
TGTCCTCCCTCGTGCTTGGATTCCCTCGTGTCTGTAGCCCGCAACAATAT
TCCTAATCGTCTTTCAACCTCGCCTTCTTACCTCTCCTATGAATTCAGGA
ACAGTACCCCCAAGCC
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protein sequence of jgi.p|Nanoce1779_2|100550

>mRNA_7032-protein ID=mRNA_7032-protein|Name=jgi.p|Nanoce1779_2|100550|organism=Nannochloropsis oceanica|type=polypeptide|length=88bp
MSSDSATPADYIQADELAAVIHLATATSIMEEAAAAAPAATGTNNGTIDT
SQANIEGEGGEEGGISKRMLKKMAKGKLKEKKDKKPP*
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mRNA from alignment at scaffold_16:117715..118130-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7032 ID=mRNA_7032|Name=jgi.p|Nanoce1779_2|100550|organism=Nannochloropsis oceanica|type=mRNA|length=416bp|location=Sequence derived from alignment at scaffold_16:117715..118130- (Nannochloropsis oceanica)
ACAACAATAGCAGCGACTAGGAGCCTGCGTGCATGTCCTCGGACAGCGCA
ACCCCCGCCGATTACATCCAAGCCGACGAGTTAGCCGCCGTCATCCACCT
GGCAACGGCAACGTCTATCATGGAGGAAGCAGCAGCAGCAGCGCCAGCAG
CGACAGGCACCAACAATGGCACCATTGACACCTCTCAAGCGAATATAGAG
GGGGAGGGAGGGGAGGAAGGCGGCATCAGCAAGCGGATGCTCAAGAAAAT
GGCCAAGGGCAAGCTCAAGGAGAAAAAAGACAAGAAGCCCCCGTAAGAAC
TGTCCTCCCTCGTGCTTGGATTCCCTCGTGTCTGTAGCCCGCAACAATAT
TCCTAATCGTCTTTCAACCTCGCCTTCTTACCTCTCCTATGAATTCAGGA
ACAGTACCCCCAAGCC
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Coding sequence (CDS) from alignment at scaffold_16:117715..118130-

>mRNA_7032 ID=mRNA_7032|Name=jgi.p|Nanoce1779_2|100550|organism=Nannochloropsis oceanica|type=CDS|length=264bp|location=Sequence derived from alignment at scaffold_16:117715..118130- (Nannochloropsis oceanica)
ATGTCCTCGGACAGCGCAACCCCCGCCGATTACATCCAAGCCGACGAGTT
AGCCGCCGTCATCCACCTGGCAACGGCAACGTCTATCATGGAGGAAGCAG
CAGCAGCAGCGCCAGCAGCGACAGGCACCAACAATGGCACCATTGACACC
TCTCAAGCGAATATAGAGGGGGAGGGAGGGGAGGAAGGCGGCATCAGCAA
GCGGATGCTCAAGAAAATGGCCAAGGGCAAGCTCAAGGAGAAAAAAGACA
AGAAGCCCCCGTAA
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Synonyms
Publications