jgi.p|Nanoce1779_2|536207, mRNA_703 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|536207
Unique NamemRNA_703
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1065
Alignment locationscaffold_2:230725..231827 -

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Properties
Property NameValue
TranscriptId536293
TrackFilteredModels2
ProteinId536207
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:230725..231827 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|536207gene_703Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|536207mRNA_703-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_703CDS_703Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_703 ID=mRNA_703|Name=jgi.p|Nanoce1779_2|536207|organism=Nannochloropsis oceanica|type=mRNA|length=1065bp
GCAACGCATATTTGTCTCATCCAGACGGTTGTCGGCGTGCCCTGTGAAGT
ATCACTGCTGTTCCATGTGAACTTTTCTCACGAACGACGACCCAATTGGC
GACCACTACAACGAATCGCCCACATGTCTTTCCCCAAATCCAAGTCAAAG
CTAACTGTACGCACAGCATTTTGTACGTTTCCTCAGCCTCATTGCCTGCT
ACATCCACATCACACAGAAACAGCGTCTGCAGACAGCAGCGAGGTGAGCT
ACAGCCTCCAGCTCTCCGTGGGCGAGTGAACCTCCTCTGTCTCGCACTAT
TTTATCATCACATCACGATGCCACAGCAATCCAAACGACTCGAAGTTGTC
CCCCTCCTTCACCTCCTCCTCAGTGTCCTCTTAGTACAGCCCTTCAATGC
TTTGCAGATCCCGTTGGGGCCAGTCCTTACCCCAAGTAGCTCGAACTTCC
GCCTGCCCAGGGCCTGGTCTTCCTTCTCCGCCGCCTCTTCGTCGTGGGCT
CTCTCAAGCAGCATCGCCACCGCCTCATCCTCCCCCACACCCGTCAACAC
GGAAAAGTTGTGCAAAAATTGTAAGACCTACTTTAACCCGATAATGAATC
ACGATCGCGCTTGTAGGTATCACCCCAAGCACTATTCTGGGGACACGAAA
CGCAAGGCTGACTGGAGCGACAACGCCGACCGATTTGGCACCCAGAAGAT
GTACTGGTGTTGTGGTGAAGAAGACGAAAAGGCACCAGGATGCAAATATG
ATAGACATCGGAGCTACGATGATGAATGAATACATGAAATTCAACCTGAC
GGGAGAAATTGAATGAGACGTGGTTACGTGTGCTTTCTCGACTTCAATTA
TAAAATATTTGTTGTCGACTCTCTCCGCTGATTCTTATGGCGCCTTCTCC
GTCCCTATTCCTCCTCTCCCTCCTATCTGTCGCTCCAAACCTACATTTCT
AAGCTCACACTATCGTCAACAATCTCTCCCCCTCCTCCCTTTCCCGTCTC
CCCATACACCACCCTTGCCAAGAAGTTCTGCCACACACCCTTATCAAATG
GATTACGATTCCTCC
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protein sequence of jgi.p|Nanoce1779_2|536207

>mRNA_703-protein ID=mRNA_703-protein|Name=jgi.p|Nanoce1779_2|536207|organism=Nannochloropsis oceanica|type=polypeptide|length=154bp
MPQQSKRLEVVPLLHLLLSVLLVQPFNALQIPLGPVLTPSSSNFRLPRAW
SSFSAASSSWALSSSIATASSSPTPVNTEKLCKNCKTYFNPIMNHDRACR
YHPKHYSGDTKRKADWSDNADRFGTQKMYWCCGEEDEKAPGCKYDRHRSY
DDE*
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mRNA from alignment at scaffold_2:230725..231827-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_703 ID=mRNA_703|Name=jgi.p|Nanoce1779_2|536207|organism=Nannochloropsis oceanica|type=mRNA|length=1103bp|location=Sequence derived from alignment at scaffold_2:230725..231827- (Nannochloropsis oceanica)
GCAACGCATATTTGTCTCATCCAGACGGTTGTCGGCGTGCCCTGTGAAGT
ATCACTGCTGTTCCATGTGAACTTTTCTCACGAACGACGACCCAATTGGC
GACCACTACAACGAATCGCCCACATGTCTTTCCCCAAATCCAAGTCAAAG
CTAACTGTACGCACAGCATTTTGTACGTTTCCTCAGCCTCATTGCCTGCT
ACATCCACATCACACAGAAACAGCGTCTGCAGACAGCAGCGAGGTGAGCT
ACAGCCTCCAGCTCTCCGTGGGCGAGTGAACCTCCTCTGTCTCGCACTAT
TTTATCATCACATCACGATGCCACAGCAATCCAAACGACTCGAAGTTGTC
CCCCTCCTTCACCTCCTCCTCAGTGTCCTCTTAGTACAGCCCTTCAATGC
TTTGCAGATCCCGTTGGGGCCAGTCCTTACCCCAAGTAGCTCGAACTTCC
GCCTGCCCAGGGCCTGGTCTTCCTTCTCCGCCGCCTCTTCGTCGTGGGCT
CTCTCAAGCAGCATCGCCACCGCCTCATCCTCCCCCACACCCGTCAACAC
GGAAAAGTTGTGCAAAAATTGTAAGACCTACTTTAACCCGATAATGAATC
ACGATCGCGCTTGTAGGTATCACCCCAAGCACTATTCTGGGGACACGAAA
CGCAAGGCTGACTGGAGCGACAACGCCGACCGATTTGGCACCCAGAAGAT
GTACTGGTGTTGTGGTGAAGAAGACGAAAAGGCACCAGGATGCAAATATG
ATAGACATCGGAGCTACGATGATGAATGAATACATGAAATTCAACCTGAC
GGGAGAAATTGAATGAGACGTGGTTACGTGTGCTTTCTCGACTTCAATTA
TAAAATATTTGTTGTCGACTCTCTCCGCTGATTCTTATGGCGCCTTCTCC
GTCCCTATTCCTCCTCTCCCTCCTATCTGTCGCTCCAAACCTACATTTCT
AAGCTCACACTATCGTCAACAATCTCTCCCCCTCCTCCCTTTCCCGTCTC
CCCCCCGCATCTCCACCCACCCCGCCCTCATACGTCTCCCCATACACCAC
CCTTGCCAAGAAGTTCTGCCACACACCCTTATCAAATGGATTACGATTCC
TCC
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Coding sequence (CDS) from alignment at scaffold_2:230725..231827-

>mRNA_703 ID=mRNA_703|Name=jgi.p|Nanoce1779_2|536207|organism=Nannochloropsis oceanica|type=CDS|length=462bp|location=Sequence derived from alignment at scaffold_2:230725..231827- (Nannochloropsis oceanica)
ATGCCACAGCAATCCAAACGACTCGAAGTTGTCCCCCTCCTTCACCTCCT
CCTCAGTGTCCTCTTAGTACAGCCCTTCAATGCTTTGCAGATCCCGTTGG
GGCCAGTCCTTACCCCAAGTAGCTCGAACTTCCGCCTGCCCAGGGCCTGG
TCTTCCTTCTCCGCCGCCTCTTCGTCGTGGGCTCTCTCAAGCAGCATCGC
CACCGCCTCATCCTCCCCCACACCCGTCAACACGGAAAAGTTGTGCAAAA
ATTGTAAGACCTACTTTAACCCGATAATGAATCACGATCGCGCTTGTAGG
TATCACCCCAAGCACTATTCTGGGGACACGAAACGCAAGGCTGACTGGAG
CGACAACGCCGACCGATTTGGCACCCAGAAGATGTACTGGTGTTGTGGTG
AAGAAGACGAAAAGGCACCAGGATGCAAATATGATAGACATCGGAGCTAC
GATGATGAATGA
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Synonyms
Publications