jgi.p|Nanoce1779_2|640445, mRNA_7029 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|640445
Unique Name	mRNA_7029
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	600
Alignment location	scaffold_16:96355..97920 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	640531
Track	FilteredModels2
ProteinId	640445

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_16	supercontig	scaffold_16:96355..97920 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|640445	gene_7029	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|640445	mRNA_7029-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7029	CDS_7029	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_16:96355..97920+
coding sequence from alignment at scaffold_16:96355..97920+

mRNA sequence

>mRNA_7029 ID=mRNA_7029|Name=jgi.p|Nanoce1779_2|640445|organism=Nannochloropsis oceanica|type=mRNA|length=600bp
ATGGTCACTGAATCCACCCCACGGGGGGAGAGAATCACGGACATCTACTC
CCGCTTGTTAAAGGAAAGGATCATCATGTGCCATGGCCCTGTGACGGAGC
CCATGGCCTCGTTGATTACGGCTCAGCTCCTTTTTTTGGAGGCGGAAAAT
CCTGACAAGCCCTGCTACATGTATATCAACTCACCCGGGGGCATCGTGAC
GGCAGGGCTGGCGATCTACGACACAATGCAGTACATCCGCCCGCCCGTGG
CCACCATATGCATGGGCCAGGCCTCATCCATGGGCTCCTTGCTATTAACG
GCCGGCGAGCCCGGCATGCGCATGGCCCTTCCCAATTCCAAAATCATGCT
CCATCAGCCCCGAGGTGGCGCTGAAGGCATGGCATCGGACATTGATATCA
TGGCTCGCGAAATCCTCAAGACGAGGGAGAGGCTGAATGCCCTTTACGTC
CAGCACACCGGCCAGGCGCTGGATGCAATTGAGAAGGTGATGGACCGGGA
CACATTTTTTGATCCGACTCAGGCGGTGGAGTTCGGTGTCGTGGATACCA
TCCTTACCAAGCGGACCGCCGCCGCCGTGGTCGAGGCGGGTGGGAAGTGA

protein sequence of jgi.p|Nanoce1779_2|640445

>mRNA_7029-protein ID=mRNA_7029-protein|Name=jgi.p|Nanoce1779_2|640445|organism=Nannochloropsis oceanica|type=polypeptide|length=200bp
MVTESTPRGERITDIYSRLLKERIIMCHGPVTEPMASLITAQLLFLEAEN
PDKPCYMYINSPGGIVTAGLAIYDTMQYIRPPVATICMGQASSMGSLLLT
AGEPGMRMALPNSKIMLHQPRGGAEGMASDIDIMAREILKTRERLNALYV
QHTGQALDAIEKVMDRDTFFDPTQAVEFGVVDTILTKRTAAAVVEAGGK*

mRNA from alignment at scaffold_16:96355..97920+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7029 ID=mRNA_7029|Name=jgi.p|Nanoce1779_2|640445|organism=Nannochloropsis oceanica|type=mRNA|length=1566bp|location=Sequence derived from alignment at scaffold_16:96355..97920+ (Nannochloropsis oceanica)
ATGGTCACTGAATCCACCCCACGGGGGGAGAGAATCACGGACATCTACTC
CCGCTTGTTAAAGGAAAGGATCATCATGTGCCATGGCCCTGTGACGGAGG
TGAGGAGAGGCTGGGGAGAAAAGGAGGGAGTACTACAAGACGAGGACGAT
GAGGCTGGTTGGAGCAAGGTCTAACTTTATTACGTGCATGCTGCATGACA
GACAGGTGTATACTTACGTGGGGCTTTGTTCACAAACCCATGTTCGGAAC
ATCCCTTTAACTAGACCCCTTGTCTCCTCCCCATCCTGTCCTCCTTCCCT
GCTGTTCTATCCCTTACCCCCAGCCCATGGCCTCGTTGATTACGGCTCAG
CTCCTTTTTTTGGAGGCGGAAAATCCTGACAAGCCCTGCTACATGTATAT
CAACTCACCCGGGGGCATCGTGACGGCAGGGCTGGCGATCTACGACACAA
TGCAGTACATCCGCCCGCCCGTGGCCACCATATGCATGGGCCAGGTGGGG
AGGGAGGGAGGGATGGAGGGAGAGGAGGAGGACGGGACAGTTCGCAAGAC
AATGCATGCACAGCACTCCAGTCATTTCTTCCCCCCCCATCCTTCGTTCC
CTGTCTTTGTTCCCCCTCTTTTCGCAGGCCTCATCCATGGGCTCCTTGCT
ATTAACGGCCGGCGAGCCCGGCATGCGCATGGCCCTTCCCAATTCCAAAA
TCATGCTCCATCAGGTAATCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCC
TCCCTCCCTCCCTCCCTTTACTTTCTTAAACTCCTCCCCCTCTCTGTTTT
TCTGTGTACATACCTATATCCATCTCCCTCTTGCCCCTTGCCTTGCCTCC
CGTTCGATCCGACTGCTGTCATGCCAGTGTGGTTGGGCAGATTTATTAAA
CCCTCCTAACCCCCCTCCCTACCCCTCCTGCGCCTCTTCCATCAGCCCCG
AGGTGGCGCTGAAGGCATGGCATCGGACATTGATATCATGGCTCGCGAAA
TCCTCAAGACGAGGGAGAGGCTGAATGCCCTTTACGTCCAGCACACCGGC
CAGGTATCACCACCCTTCCCTCCCTCCCTCCCTCCCTTCTCCCCTTCCCC
TCTCCCTCTATTTTTTGTCTACTCCTCCCCTCCTATCTGTTGTCTTTCAT
TTCTCACGCAGCCATTGACTCGCATCCGTTTCCTCGCCTCCCTCCTCCTC
CTTCCCTCTCCTCCTCCTTCCCTTCCTCCCTCCCTCCCTCCCTTCCTCGC
CTGTCCACAGGCGCTGGATGCAATTGAGAAGGTAAGAGCAAGGGAAATGG
CAGGCAGGGAGGAGGGGAAGGAGGAAGGGAAGGAGGAAGGGAAGGAAGTG
AGACAGGCGGCATAGGAAGAACGTGAGTACACATGATCTCATCCTCCCTC
CCTCCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTTGAGAGT
AGGTGATGGACCGGGACACATTTTTTGATCCGACTCAGGCGGTGGAGTTC
GGTGTCGTGGATACCATCCTTACCAAGCGGACCGCCGCCGCCGTGGTCGA
GGCGGGTGGGAAGTGA

Coding sequence (CDS) from alignment at scaffold_16:96355..97920+

>mRNA_7029 ID=mRNA_7029|Name=jgi.p|Nanoce1779_2|640445|organism=Nannochloropsis oceanica|type=CDS|length=3600bp|location=Sequence derived from alignment at scaffold_16:96355..97920+ (Nannochloropsis oceanica)
ATGGTCACTGAATCCACCCCACGGGGGGAGAGAATCACGGACATCTACTC
CCGCTTGTTAAAGGAAAGGATCATCATGTGCCATGGCCCTGTGACGGAGC
CCATGGCCTCGTTGATTACGGCTCAGCTCCTTTTTTTGGAGGCGGAAAAT
CCTGACAAGCCCTGCTACATGTATATCAACTCACCCGGGGGCATCGTGAC
GGCAGGGCTGGCGATCTACGACACAATGCAGTACATCCGCCCGCCCGTGG
CCACCATATGCATGGGCCAGGCCTCATCCATGGGCTCCTTGCTATTAACG
GCCGGCGAGCCCGGCATGCGCATGGCCCTTCCCAATTCCAAAATCATGCT
CCATCAGCCCCGAGGTGGCGCTGAAGGCATGGCATCGGACATTGATATCA
TGGCTCGCGAAATCCTCAAGACGAGGGAGAGGCTGAATGCCCTTTACGTC
CAGCACACCGGCCAGGCGCTGGATGCAATTGAGAAGGTGATGGACCGGGA
CACATTTTTTGATCCGACTCAGGCGGTGGAGTTCGGTGTCGTGGATACCA
TCCTTACCAAGCGGACCGCCGCCGCCGTGGTCGAGGCGGGTGGGAAGTGA
ATGGTCACTGAATCCACCCCACGGGGGGAGAGAATCACGGACATCTACTC
CCGCTTGTTAAAGGAAAGGATCATCATGTGCCATGGCCCTGTGACGGAGC
CCATGGCCTCGTTGATTACGGCTCAGCTCCTTTTTTTGGAGGCGGAAAAT
CCTGACAAGCCCTGCTACATGTATATCAACTCACCCGGGGGCATCGTGAC
GGCAGGGCTGGCGATCTACGACACAATGCAGTACATCCGCCCGCCCGTGG
CCACCATATGCATGGGCCAGGCCTCATCCATGGGCTCCTTGCTATTAACG
GCCGGCGAGCCCGGCATGCGCATGGCCCTTCCCAATTCCAAAATCATGCT
CCATCAGCCCCGAGGTGGCGCTGAAGGCATGGCATCGGACATTGATATCA
TGGCTCGCGAAATCCTCAAGACGAGGGAGAGGCTGAATGCCCTTTACGTC
CAGCACACCGGCCAGGCGCTGGATGCAATTGAGAAGGTGATGGACCGGGA
CACATTTTTTGATCCGACTCAGGCGGTGGAGTTCGGTGTCGTGGATACCA
TCCTTACCAAGCGGACCGCCGCCGCCGTGGTCGAGGCGGGTGGGAAGTGA
ATGGTCACTGAATCCACCCCACGGGGGGAGAGAATCACGGACATCTACTC
CCGCTTGTTAAAGGAAAGGATCATCATGTGCCATGGCCCTGTGACGGAGC
CCATGGCCTCGTTGATTACGGCTCAGCTCCTTTTTTTGGAGGCGGAAAAT
CCTGACAAGCCCTGCTACATGTATATCAACTCACCCGGGGGCATCGTGAC
GGCAGGGCTGGCGATCTACGACACAATGCAGTACATCCGCCCGCCCGTGG
CCACCATATGCATGGGCCAGGCCTCATCCATGGGCTCCTTGCTATTAACG
GCCGGCGAGCCCGGCATGCGCATGGCCCTTCCCAATTCCAAAATCATGCT
CCATCAGCCCCGAGGTGGCGCTGAAGGCATGGCATCGGACATTGATATCA
TGGCTCGCGAAATCCTCAAGACGAGGGAGAGGCTGAATGCCCTTTACGTC
CAGCACACCGGCCAGGCGCTGGATGCAATTGAGAAGGTGATGGACCGGGA
CACATTTTTTGATCCGACTCAGGCGGTGGAGTTCGGTGTCGTGGATACCA
TCCTTACCAAGCGGACCGCCGCCGCCGTGGTCGAGGCGGGTGGGAAGTGA
ATGGTCACTGAATCCACCCCACGGGGGGAGAGAATCACGGACATCTACTC
CCGCTTGTTAAAGGAAAGGATCATCATGTGCCATGGCCCTGTGACGGAGC
CCATGGCCTCGTTGATTACGGCTCAGCTCCTTTTTTTGGAGGCGGAAAAT
CCTGACAAGCCCTGCTACATGTATATCAACTCACCCGGGGGCATCGTGAC
GGCAGGGCTGGCGATCTACGACACAATGCAGTACATCCGCCCGCCCGTGG
CCACCATATGCATGGGCCAGGCCTCATCCATGGGCTCCTTGCTATTAACG
GCCGGCGAGCCCGGCATGCGCATGGCCCTTCCCAATTCCAAAATCATGCT
CCATCAGCCCCGAGGTGGCGCTGAAGGCATGGCATCGGACATTGATATCA
TGGCTCGCGAAATCCTCAAGACGAGGGAGAGGCTGAATGCCCTTTACGTC
CAGCACACCGGCCAGGCGCTGGATGCAATTGAGAAGGTGATGGACCGGGA
CACATTTTTTGATCCGACTCAGGCGGTGGAGTTCGGTGTCGTGGATACCA
TCCTTACCAAGCGGACCGCCGCCGCCGTGGTCGAGGCGGGTGGGAAGTGA
ATGGTCACTGAATCCACCCCACGGGGGGAGAGAATCACGGACATCTACTC
CCGCTTGTTAAAGGAAAGGATCATCATGTGCCATGGCCCTGTGACGGAGC
CCATGGCCTCGTTGATTACGGCTCAGCTCCTTTTTTTGGAGGCGGAAAAT
CCTGACAAGCCCTGCTACATGTATATCAACTCACCCGGGGGCATCGTGAC
GGCAGGGCTGGCGATCTACGACACAATGCAGTACATCCGCCCGCCCGTGG
CCACCATATGCATGGGCCAGGCCTCATCCATGGGCTCCTTGCTATTAACG
GCCGGCGAGCCCGGCATGCGCATGGCCCTTCCCAATTCCAAAATCATGCT
CCATCAGCCCCGAGGTGGCGCTGAAGGCATGGCATCGGACATTGATATCA
TGGCTCGCGAAATCCTCAAGACGAGGGAGAGGCTGAATGCCCTTTACGTC
CAGCACACCGGCCAGGCGCTGGATGCAATTGAGAAGGTGATGGACCGGGA
CACATTTTTTGATCCGACTCAGGCGGTGGAGTTCGGTGTCGTGGATACCA
TCCTTACCAAGCGGACCGCCGCCGCCGTGGTCGAGGCGGGTGGGAAGTGA
ATGGTCACTGAATCCACCCCACGGGGGGAGAGAATCACGGACATCTACTC
CCGCTTGTTAAAGGAAAGGATCATCATGTGCCATGGCCCTGTGACGGAGC
CCATGGCCTCGTTGATTACGGCTCAGCTCCTTTTTTTGGAGGCGGAAAAT
CCTGACAAGCCCTGCTACATGTATATCAACTCACCCGGGGGCATCGTGAC
GGCAGGGCTGGCGATCTACGACACAATGCAGTACATCCGCCCGCCCGTGG
CCACCATATGCATGGGCCAGGCCTCATCCATGGGCTCCTTGCTATTAACG
GCCGGCGAGCCCGGCATGCGCATGGCCCTTCCCAATTCCAAAATCATGCT
CCATCAGCCCCGAGGTGGCGCTGAAGGCATGGCATCGGACATTGATATCA
TGGCTCGCGAAATCCTCAAGACGAGGGAGAGGCTGAATGCCCTTTACGTC
CAGCACACCGGCCAGGCGCTGGATGCAATTGAGAAGGTGATGGACCGGGA
CACATTTTTTGATCCGACTCAGGCGGTGGAGTTCGGTGTCGTGGATACCA
TCCTTACCAAGCGGACCGCCGCCGCCGTGGTCGAGGCGGGTGGGAAGTGA

Synonyms

Publications