jgi.p|Nanoce1779_2|595321, mRNA_7025 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595321
Unique NamemRNA_7025
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length505
Alignment locationscaffold_16:82350..82854 -

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Properties
Property NameValue
TranscriptId595407
TrackFilteredModels2
ProteinId595321
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:82350..82854 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595321gene_7025Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595321mRNA_7025-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7025CDS_7025Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7025 ID=mRNA_7025|Name=jgi.p|Nanoce1779_2|595321|organism=Nannochloropsis oceanica|type=mRNA|length=505bp
TTGTGTTGTGGTTGAGTACTTTTTTTTTTCGTATGAGGAGAATAATTATT
GTAATCATCGTTCGGATGATTATCTTTATCTTTCAATGTAGAACTTCTTT
ATTATTCTTTACTTGTGGTTGCTGTCGGATCTTCCCTCCTTCGTCAAGAA
TGAAGGGGGAGGAAGGAGGAAAGGAAGGAGGGGGAAAACAATGTGCACCT
GGTCGTGGAACACATGTGCGGAAGGGAGCTGAGGCTGTGTTAATACAAAT
GTGTTGGTGTTGAATAAAGTTGTGTATCTCTAACTGGCTGTCTCGGTGTT
TCTCGCTTGCCCGTTCTCTCTCGCTCGCTCGCTCTCTTCCTCTTTTCTTT
TCCTCTTTCTCTTTTTTCTTCCCCCTTTCCTGTCTTTCTCTCGATTTCTC
TCAGTCTCGCTCCCTCTCGCACTCGTTTTTAAGCGAGTGTTTATTGCTTT
CGCTCTTTCCCTCCTCTCGATCTCTCTTCCTCATTCCCTCCCTCCCTCCC
TCCCT
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protein sequence of jgi.p|Nanoce1779_2|595321

>mRNA_7025-protein ID=mRNA_7025-protein|Name=jgi.p|Nanoce1779_2|595321|organism=Nannochloropsis oceanica|type=polypeptide|length=77bp
MRRIIIVIIVRMIIFIFQCRTSLLFFTCGCCRIFPPSSRMKGEEGGKEGG
GKQCAPGRGTHVRKGAEAVLIQMCWC*
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mRNA from alignment at scaffold_16:82350..82854-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7025 ID=mRNA_7025|Name=jgi.p|Nanoce1779_2|595321|organism=Nannochloropsis oceanica|type=mRNA|length=505bp|location=Sequence derived from alignment at scaffold_16:82350..82854- (Nannochloropsis oceanica)
TTGTGTTGTGGTTGAGTACTTTTTTTTTTCGTATGAGGAGAATAATTATT
GTAATCATCGTTCGGATGATTATCTTTATCTTTCAATGTAGAACTTCTTT
ATTATTCTTTACTTGTGGTTGCTGTCGGATCTTCCCTCCTTCGTCAAGAA
TGAAGGGGGAGGAAGGAGGAAAGGAAGGAGGGGGAAAACAATGTGCACCT
GGTCGTGGAACACATGTGCGGAAGGGAGCTGAGGCTGTGTTAATACAAAT
GTGTTGGTGTTGAATAAAGTTGTGTATCTCTAACTGGCTGTCTCGGTGTT
TCTCGCTTGCCCGTTCTCTCTCGCTCGCTCGCTCTCTTCCTCTTTTCTTT
TCCTCTTTCTCTTTTTTCTTCCCCCTTTCCTGTCTTTCTCTCGATTTCTC
TCAGTCTCGCTCCCTCTCGCACTCGTTTTTAAGCGAGTGTTTATTGCTTT
CGCTCTTTCCCTCCTCTCGATCTCTCTTCCTCATTCCCTCCCTCCCTCCC
TCCCT
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Coding sequence (CDS) from alignment at scaffold_16:82350..82854-

>mRNA_7025 ID=mRNA_7025|Name=jgi.p|Nanoce1779_2|595321|organism=Nannochloropsis oceanica|type=CDS|length=231bp|location=Sequence derived from alignment at scaffold_16:82350..82854- (Nannochloropsis oceanica)
ATGAGGAGAATAATTATTGTAATCATCGTTCGGATGATTATCTTTATCTT
TCAATGTAGAACTTCTTTATTATTCTTTACTTGTGGTTGCTGTCGGATCT
TCCCTCCTTCGTCAAGAATGAAGGGGGAGGAAGGAGGAAAGGAAGGAGGG
GGAAAACAATGTGCACCTGGTCGTGGAACACATGTGCGGAAGGGAGCTGA
GGCTGTGTTAATACAAATGTGTTGGTGTTGA
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Synonyms
Publications